New Arabidopsis DNA 18-Apr-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Apr 18 15:42:58 EST 1998


====================== New DNA Sequences =======================

AB012239    AB012239    69142bp    DNA      PLN      11-APR-1998
    Arabidopsis thaliana genomic DNA, chromosome5, TAC clone: K11J9, complete
     sequence.
    HTG.

AB012240    AB012240    71618bp    DNA      PLN      11-APR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K18C1,
     complete sequence.
    HTG.

AB012241    AB012241    78239bp    DNA      PLN      11-APR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K18L3,
     complete sequence.
    HTG.

AB012242    AB012242    78973bp    DNA      PLN      11-APR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K24G6,
     complete sequence.
    HTG.

AB012243    AB012243    68697bp    DNA      PLN      11-APR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MIJ24, complete
     sequence.
    HTG.

AB012244    AB012244    57031bp    DNA      PLN      11-APR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MQJ16, complete
     sequence.
    HTG.

AB012245    AB012245    86722bp    DNA      PLN      11-APR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRA19, complete
     sequence.
    HTG.

AB012246    AB012246    83948bp    DNA      PLN      11-APR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRG7, complete
     sequence.
    HTG.

AB012247    AB012247    79355bp    DNA      PLN      11-APR-1998
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSL1, complete
     sequence.
    HTG.

AB012248    AB012248    80115bp    DNA      PLN      11-APR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXI22, complete
     sequence.
    HTG.

AC004557    AC004557    93805bp    DNA      HTG      14-APR-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F17L21; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC004561    AC004561   113468bp    DNA      HTG      16-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16P2'
     genomic sequence near marker 'mi54'; HTGS phase 1, 20 unordered pieces.
    HTG; HTGS_PHASE1.

AF034774    AF034774     2506bp    mRNA     PLN      17-APR-1998
    Arabidopsis thaliana ent-kaurene synthase (GA2) mRNA, complete cds.
    GA2; ent-kaurene synthase.

AF057043    AF057043     2267bp    mRNA     PLN      15-APR-1998
    Arabidopsis thaliana acyl-CoA oxidase (ACX2) mRNA, complete cds.
    ACX2; acyl-CoA oxidase.

AF057044    AF057044     2300bp    mRNA     PLN      15-APR-1998
    Arabidopsis thaliana acyl-CoA oxidase (ACX1) mRNA, complete cds.
    ACX1; acyl-CoA oxidase.

AF057144    AF057144      639bp    mRNA     PLN      13-APR-1998
    Arabidopsis thaliana signal peptidase mRNA, complete cds.
    signal peptidase.

AF058825    AF058825   110157bp    DNA      PLN      14-APR-1998
    Arabidopsis thaliana BAC F7N22.
    F7N22.18; F7N22.3; F7N22.4; F7N22.17; F7N22.6; F7N22.7; F7N22.8;
     F7N22.15; F7N22.10; F7N22.11; F7N22.12; F7N22.14; F7N22.13.

AF058826    AF058826   113567bp    DNA      PLN      14-APR-1998
    Arabidopsis thaliana BAC T26D22.
    T26D22.1; T26D22.2; T26D22.18; T26D22.5; T26D22.7; T26D22.13; T26D22.8;
     T26D22.12; T26D22.11; T26D22.9; T26D22.10.

AF058914    AF058914   111767bp    DNA      PLN      14-APR-1998
    Arabidopsis thaliana BAC F21E10.
    F21E10.14; F21E10.5; F21E10.7; F21E10.8; F21E10.9; F21E10.10; ATMYB4;
     Arabidopsis thaliana transcription factor ATMYB4 (GB:X95297); F21E10.11;
     F21E10.3; F21E10.2; F21E10.12; F21E10.13; F21E10.1.

AF058919    AF058919    91149bp    DNA      PLN      14-APR-1998
    Arabidopsis thaliana BAC F6N23.
    F6N23.23; F6N23.22; F6N23.1; F6N23.21; F6N23.2; F6N23.3; F6N23.20;
     F6N23.19; F6N23.24; F6N23.17; F6N23.16; F6N23.4; F6N23.5; F6N23.28;
     F6N23.29; F6N23.26; F6N23.15; F6N23.14; F6N23.25; F6N23.6; F6N23.13;
     F6N23.12; F6N23.7; F6N23.8; F6N23.9; Shaggy related protein kinase
     tetha; protein kinase; homeodomain protein AHDP; Arabidopsis thaliana
     homeodomain protein AHDP (SP:P93041).

ATAJ5261    AJ005261     1017bp    mRNA     PLN      09-APR-1998
    Arabidopsis thaliana mRNA for cytidine deaminase.
    cdd gene; cytidine deaminase; CDD.

==================== Updated DNA Sequences =====================

AC003096    AC003096    79506bp    DNA      HTG      11-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T29F13'
     genomic sequence near marker 've016'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC004136    AC004136   111640bp    DNA      HTG      11-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T8K22'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 7 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004138    AC004138   101947bp    DNA      HTG      14-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17M13'
     genomic sequence near marker 'CIC11A04'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004255    AC004255    97789bp    DNA      PLN      16-APR-1998
    Arabidopsis thaliana BAC T1F9 chromosome 1, complete sequence.
    HTG; T1F9.1; T1F9.2; T1F9.3; T1F9.4; T1F9.5; T1F9.6; T1F9.7; T1F9.8;
     T1F9.9; T1F9.10; T1F9.11; T1F9.12; T1F9.13; T1F9.14; T1F9.15; T1F9.16;
     T1F9.17; T1F9.18; T1F9.19; T1F9.20; T1F9.21; T1F9.22; T1F9.23.

AC004411    AC004411   107524bp    DNA      HTG      14-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14M4'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 10 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004512    AC004512    89652bp    DNA      HTG      16-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC T8F5
     sequence; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004521    AC004521   118400bp    DNA      HTG      11-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F4I1'
     genomic sequence near marker 'm336'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

=========== Updated Sequence Features/Annotations  =============

AF021244    AF021244     1188bp    mRNA     PLN      15-APR-1998
    Arabidopsis thaliana coronatine-induced protein 1 (COR1) mRNA, complete
     cds.
    COR1; coronatine-induced protein 1.

ATF1C12     AL022224   111945bp    DNA      PLN      09-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F1C12 (ESSAII project).
    F1C12.10; hypothetical protein; F1C12.20; F1C12.30; vacuolar sorting
     receptor-like protein; F1C12.40; F1C12.50; F1C12.60; leucine rich
     repeat-like protein; F1C12.70; putative protein; F1C12.80; Glu-rich
     protein; F1C12.90; F1C12.100; retrotransposon like protein (fragment);
     F1C12.110; F1C12.120; terpene cyclase like protein; F1C12.130; cadinene
     synthase like protein; F1C12.140; F1C12.150; F1C12.160; cytochrome p450
     like protein; F1C12.170; F1C12.180; endomembrane-associated protein;
     F1C12.190; CLV1 receptor kinase like protein; F1C12.195; F1C12.200;
     F1C12.211; F1C12.220; F1C12.230; CTP synthase like protein.

ATF1N20     AL022140   103270bp    DNA      PLN      09-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F1N20 (ESSAII project).
    F1N20.10; F1N20.20; hypothetical protein; F1N20.30; putative protein;
     F1N20.40; calcium-dependent protein kinase - like protein; F1N20.50;
     F1N20.60; peroxidase prxr1; F1N20.70; F1N20.80; symbiosis-related like
     protein; F1N20.90; PRH26 protein; F1N20.100; F1N20.110; pectinesterase
     like protein; F1N20.120; glycine-rich protein; F1N20.130; F1N20.140; LTR
     retrotransposon like protein; F1N20.150; aspartic proteinase like
     protein; F1N20.160; F1N20.170; F1N20.180; pectate lyase like protein;
     F1N20.190; F1N20.200; glucosidase like protein; F1N20.210; alcohol
     dehydrogenase like protein; F1N20.220; F1N20.230; serine/threonine
     protein kinase like protein; F1N20.240; receptor like protein
     (fragment).

ATF21O9     AL021749    93695bp    DNA      PLN      09-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F21O9 (ESSAII project).
    F21O9.10; hypothetical protein; F21O9.20; F21O9.40; receptor protein
     kinase like protein; F21O9.30; copper-binding protein-like; F21O9.50;
     F21O9.70; extensin-like protein; F21O9.60; ADP, ATP carrier-like
     protein; F21O9.80; protein phosphatase 2C-like protein; F21O9.90;
     F21O9.100; tyrosine transaminase-like protein; F21O9.110; F21O9.120;
     putative protein; F21O9.130; SOF1 protein-like protein; F21O9.140;
     F21O9.150; F21O9.160; heat-shock protein; F21O9.170; F21O9.180;
     receptor-like protein kinase 5 precursor (RLK5); F21O9.190; predicted
     protein; F21O9.200; prohibitin-like protein; F21O9.210; 12S cruciferin
     seed storage protein; F21O9.220; NAM / CUC2 -like protein; F21O9.230;
     F21O9.240; protein kinase ADK1-like protein.

ATF6I18     AL022198   122322bp    DNA      PLN      09-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSAII project).
    F6I18.10; F6I18.20; putative protein; F6I18.30; F6I18.40; F6I18.50;
     hypothetical protein; F6I18.60; F6I18.70; F6I18.80; F6I18.90; putative
     calmodulin-binding protein; F6I18.100; F6I18.110; F6I18.120; F6I18.130;
     putative protein kinase; F6I18.140; chloroplast omega-6 fatty acid
     desaturase (fad6); F6I18.150; F6I18.160; F6I18.170; leucyl
     aminopeptidase - like protein; F6I18.180; leucyl aminopeptidase - like
     protein (partial); F6I18.190; F6I18.200; F6I18.210; F6I18.220;
     F6I18.230; F6I18.240; F6I18.250; F6I18.260; F6I18.270; puative protein;
     F6I18.280; SERINE CARBOXYPEPTIDASE II - like protein; F6I18.290;
     ribosomal protein S11 - like (partial).

ATHMTRIPR   L28828     2725bp    DNA      PLN      30-SEP-1994
    Arabidopsis thaliana ribosomal protein S11 gene, complete cds.
    ribosomal protein S11.

ATHPAL2     L33678     4507bp    DNA      PLN      14-JUL-1995
    Arabidopsis thaliana (strain Columbia) phenylalanine ammonia-lyase (PAL2)
     gene, complete cds.
    phenylalanine ammonia-lyase; PAL2; phenylalanine ammonia lyase.

ATHPAL      L33677     4921bp    DNA      PLN      14-JUL-1995
    Arabidopsis thaliana (strain Landsberg erecta) phenylalanine
     ammonia-lyase (PAL) gene, complete cds.
    phenylalanine ammonia-lyase; PAL; phenylalanine ammonia lyase.

ATHRAS      M25471     1800bp    DNA      PLN      15-SEP-1994
    Arabidopsis thaliana ras-related protein (ara) gene, complete cds.
    proto-oncogene; ras-related protein; ara.

ATHTHIOGL   L11454     1791bp    mRNA     PLN      31-JAN-1995
    Arabidopsis thaliana thioglucosidase mRNA, complete cds.
    myrosinase; thioglucosidase; thioglucoside glucohydrolase.

ATM3E9      AL022223    80679bp    DNA      PLN      09-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone M3E9 (ESSAII project).
    M3E9.10; putative protein; M3E9.20; M3E9.30; receptor protein kinase -
     like protein; M3E9.40; fructose-bisphosphate aldolase - like protein;
     M3E9.50; fructose-bisphosphate aldolase; M3E9.60; putative uracil
     phosphoribosyl transferase; M3E9.70; M3E9.80; hypothetical protein;
     M3E9.90; M3E9.100; M3E9.110; M3E9.120; M3E9.130; M3E9.140; M3E9.150;
     M3E9.160; M3E9.170; M3E9.180; pyruvate kinase like protein; M3E9.190;
     M3E9.200; M3E9.210.

ATM7J2      AL022197    80387bp    DNA      PLN      10-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone M7J2 (ESSAII project).
    M7J2.10; putative protein; M7J2.20; hypothetical protein; M7J2.30;
     M7J2.40; actin depolymerizing factor - like protein; M7J2.50; M7J2.60;
     M7J2.70; myb - like protein; M7J2.80; M7J2.90; putative DNA mismatch
     repair protein; M7J2.100; putative homeodomain-protein; M7J2.110;
     M7J2.120; M7J2.130; splicing factor At-SRp40; M7J2.140; transcriptional
     activator CBF1; M7J2.150; transcriptional activator CBF1 - like protein;
     M7J2.160; M7J2.170; M7J2.180; M7J2.190; M7J2.200; M7J2.210; gibberellin
     20-oxidase (fragment).

ATT18B16    AL021687    96574bp    DNA      PLN      10-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone T18B16 (ESSAII project).
    T18B16.10; hypothetical protein; T18B16.20; putative protein; T18B16.30;
     T18B16.40; cadmium-induced protein; T18B16.50; T18B16.60; T18B16.70;
     T18B16.80; T18B16.90; T18B16.100; replication A protein-like;
     T18B16.110; T18B16.120; ankyrin-like protein; T18B16.130; T18B16.140;
     neoxanthin cleavage enzyme-like protein; T18B16.150; T18B16.160;
     putatative protein; T18B16.170; T18B16.180; RNase L inhibitor;
     T18B16.190; T18B16.200; cytochrome P450; T18B16.210.

ATU12546    U12546     1680bp    mRNA     PLN      06-APR-1995
    Arabidopsis thaliana Columbia homeotic APETALA2 protein (APETALA2) mRNA,
     complete cds.
    APETALA2; APETALA2 protein.

ATU25649    U25649     5873bp    DNA      PLN      24-JUL-1995
    Arabidopsis thaliana putative pectin methylesterase (ATPME2) gene,
     partial cds, and (ATPME1) gene, complete cds.
    ATPME2; ATPME2 precursor; ATPME1; ATPME1 precursor.

ATU39486    U39486     2235bp    DNA      PLN      18-MAY-1996
    Arabidopsis thaliana delta tonoplast integral protein gene, partial cds.
    delta tonoplast integral protein.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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