The AtDB project announces a new data set on their Web BLAST resource.
This new data set contains all DNA sequences from higher plants
contained within GenBank. Below is are listed those data sets
currently provided by the AtDB project for BLAST searches.
GenBank All GenBank entries for Arabidopsis. This includes ESTs,
BAC ends, preliminary AGI sequences submitted to the high
throughput genomics (HTG) section, patent sequences,
finished AGI sequences, all those sequences submitted
by laboratories around the world, and any other type
of sequence contained within GenBank.
Recent A.t. GenBank Sequences New/Changed in the last Month
NRAT Non-Redundant Arabidopsis Protein data set built from
GenPept, PIR, and SwissProt.
BACEND Arabidopsis BAC End Sequences
EST Arabidopsis EST sequences
Annotated Arabidopsis GenBank sequences without EST & BAC ends
CSHLPrel CSHL & WASHU Preliminary Genomic Sequences. These preliminary
sequences are not submitted to GenBank.
Mendel Mendel database of curated set of sequenced Plant Protein
PlantDNA Higher Plant Sequences from all sections of GenBank.
Address for the Arabidopsis thaliana Database (AtDB) Project
e-mail: atdb-curator at genome.stanford.edu
J. Michael Cherry Internet: cherry at genome.stanford.edu
Department of Genetics Stanford University School of Medicine
Medical Center, Room M341 Stanford, California 94305-5120
Voice: 650-723-7541 FAX: 650-723-7016