New Arabidopsis DNA 25-Apr-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon Apr 27 13:03:47 EST 1998


====================== New DNA Sequences =======================

AF039377    AF039377      465bp    DNA      PLN      23-APR-1998
    Arabidopsis thaliana clone C1 putative disease resistance protein gene,
     partial cds.
    putative disease resistance protein.

AF039378    AF039378      474bp    DNA      PLN      23-APR-1998
    Arabidopsis thaliana clone C2 putative disease resistance protein gene,
     partial cds.
    putative disease resistance protein.

AF039379    AF039379      470bp    DNA      PLN      23-APR-1998
    Arabidopsis thaliana clone C3 putative disease resistance protein gene,
     partial cds.
    putative disease resistance protein.

AF039380    AF039380      712bp    DNA      PLN      23-APR-1998
    Arabidopsis thaliana clone C4 putative disease resistance protein gene,
     partial cds.
    putative disease resistance protein.

AF039381    AF039381      474bp    DNA      PLN      23-APR-1998
    Arabidopsis thaliana clone L2 putative disease resistance protein gene,
     partial cds.
    putative disease resistance protein.

AF039382    AF039382      767bp    DNA      PLN      23-APR-1998
    Arabidopsis thaliana clone L3 putative disease resistance protein gene,
     partial cds.
    putative disease resistance protein.

AF039383    AF039383      758bp    DNA      PLN      23-APR-1998
    Arabidopsis thaliana clone L4 putative disease resistance protein gene,
     partial cds.
    putative disease resistance protein.

AF049236    AF049236    60000bp    DNA      PLN      22-APR-1998
    Arabidopsis thaliana putative transmembrane protein G1p (AtG1), putative
     nuclear DNA-binding protein G2p (AtG2), Em1 protein (ATEM1), putative
     chlorophyll synthetase (AtG4), putative transmembrane protein G5p
     (AtG5), putative acyl-coA dehydrogenase (AtG6), and calcium dependent
     protein kinase genes, complete cds; and unknown genes.
    hypothetical protein; AtG1; putative transmembrane protein G1p; AtG2;
     putative nuclear DNA-binding protein G2p; ATEM1; Em1 protein; AtG4;
     putative chlorophyll synthetase; AtG5; putative transmembrane protein
     G5p; AtG6; putative acyl-coA dehydrogenase Gp6; putative acyl-coA
     dehydrogenase; calcium dependent protein kinase.

AF058391    AF058391      459bp    mRNA     PLN      21-APR-1998
    Arabidopsis thaliana nucleoside diphosphate kinase Ia mRNA, complete cds.
    nucleoside diphosphate kinase Ia.

AF058800    AF058800     1776bp    DNA      PLN      21-APR-1998
    Arabidopsis thaliana putative methyltransferase gene, complete cds.
    putative methyltransferase.

AF059037    AF059037      937bp    mRNA     PLN      18-APR-1998
    Arabidopsis thaliana chaperonin 10 (CPN10) mRNA, complete cds.
    CPN10; chaperonin 10.

AF059294    AF059294      806bp    mRNA     PLN      22-APR-1998
    Arabidopsis thaliana Skp1 homolog (SKP1a) mRNA, complete cds.
    SKP1a; Skp1 homolog.

AF059295    AF059295      759bp    mRNA     PLN      22-APR-1998
    Arabidopsis thaliana Skp1 homolog (SKP1b) mRNA, complete cds.
    SKP1b; Skp1 homolog.

ATDRG1      AF039384      390bp    DNA      PLN      21-APR-1998
    Arabidopsis thaliana disease resistance-like protein gene, partial cds.
    disease resistance-like protein.

ATDRG2      AF039385      702bp    DNA      PLN      21-APR-1998
    Arabidopsis thaliana disease resistance-like protein gene, partial cds.
    disease resistance-like protein.

ATDRLG1     AF039386      556bp    DNA      PLN      22-APR-1998
    Arabidopsis thaliana disease resistance-like gene, exons 1 and 2.
    disease resistance-like gene.

ATDRLG2     AF039387      540bp    DNA      PLN      22-APR-1998
    Arabidopsis thaliana disease resistance-like gene, partial sequence.
    disease resistance-like gene.

ATF18E5     AL022603    95266bp    DNA      PLN      22-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project).
    F18E5.10; F18E5.20; serine/threonine protein kinase; F18E5.30; F18E5.40;
     hypothetical protein; F18E5.50; F18E5.60; myb-related protein; F18E5.70;
     putative membrane associated protein; F18E5.80; putative protein;
     F18E5.90; F18E5.100; glucose transporter; F18E5.110; NADH dehydrogenase
     like protein; F18E5.120; F18E5.130; F18E5.140; F18E5.150; F18E5.160;
     F18E5.170; VP1 like protein; F18E5.180; F18E5.190; F18E5.200; putative
     NADPH quinone oxidoreductase; F18E5.210; F18E5.220; F18E5.230; Lsd1 like
     protein.

ATF23E12    AL022604    86710bp    DNA      PLN      22-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSAII project).
    F23E12.10; hypothetical protein; F23E12.20; putative protein; F23E12.30;
     clathrin assembly protein AP19 homolog; F23E12.40; F23E12.50; F23E12.60;
     F23E12.70; F23E12.80; F23E12.90; cysteine proteinase - like protein;
     F23E12.100; UDP-galactose transporter - like protein; F23E12.110;
     F23E12.120; F23E12.130; calmodulin-domain protein kinase CDPK isoform 5
     (CPK5); F23E12.140; putative sugar transporter protein; F23E12.150;
     F23E12.160; putative zinc-finger protein; F23E12.170; F23E12.180; NAD+
     dependent isocitrate dehydrogenase subunit 1; F23E12.190; F23E12.200;
     F23E12.210; F23E12.220.

ATF4D11     AL022537   101715bp    DNA      PLN      16-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F4D11 (ESSAII project).
    F4D11.10; putative protein; F4D11.20; F4D11.30; F4D11.40; F4D11.50;
     hypothetical protein; F4D11.60; F4D11.70; putative myb-protein
     (partial); F4D11.80; F4D11.90; F4D11.100; F4D11.110; F4D11.120;
     F4D11.130; F4D11.140; protein kinase AME3; F4D11.150; potassium channel
     protein; F4D11.160; F4D11.170; F4D11.180; F4D11.190; F4D11.200;
     F4D11.210; F4D11.220; F4D11.230.

ATJ001158   AJ001158     2132bp    mRNA     PLN      23-APR-1998
    Arabidopsis thaliana mRNA for an ABC1-like gene.
    ABC1-like gene; ABC1At; ABC1 protein.

ATT19P19    AL022605    88343bp    DNA      PLN      22-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone T19P19 (ESSAII project).
    T19P19.10; hypothetical protein; T19P19.20; T19P19.30; putative
     gamma-glutamyltransferase; T19P19.40; T19P19.50; putative protein;
     T19P19.60; T19P19.70; T19P19.80; T19P19.90; T19P19.100; T19P19.110;
     T19P19.120; T19P19.130; T19P19.140; T19P19.150; T19P19.160; puative
     protein; T19P19.170; T19P19.180; T19P19.190; myo-inositol-1-phosphate
     synthase; T19P19.200; T19P19.210; T19P19.220; putative L-ascorbate
     oxidase.

ATT5K18     AL022580    90551bp    DNA      PLN      22-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone T5K18 (ESSAII project).
    T5K18.10; cytochrome P450; T5K18.20; hypothetical protein; T5K18.30;
     putative protein; T5K18.40; T5K18.50; T5K18.60; T5K18.70; T5K18.80;
     hypothtetical protein; T5K18.90; T5K18.100; T5K18.110; puatative
     protein; T5K18.120; T5K18.130; T5K18.140; T5K18.150; T5K18.160;
     T5K18.170; T5K18.180; T5K18.190; putative pectinacetylesterase protein;
     T5K18.200; putative pectinacetylesterase; T5K18.210; T5K18.220;
     T5K18.230; T5K18.240.

ATU77365    U77365     2221bp    mRNA     PLN      25-APR-1998
    Arabidopsis thaliana pasticcino 1-A (PAS1-A) mRNA, complete cds.
    PAS1-A; pasticcino 1-A.

ATU77366    U77366     2136bp    mRNA     PLN      25-APR-1998
    Arabidopsis thaliana pasticcino 1-D (PAS1-D) mRNA, complete cds.
    PAS1-D; pasticcino 1-D.

==================== Updated DNA Sequences =====================

AC003981    AC003981   133840bp    DNA      PLN      18-APR-1998
    Complete sequence of Arabidopsis F22O13, complete sequence.
    HTG; F22O13.1; F22O13.2; F22O13.3; F22O13.4; F22O13.5; F22O13.6;
     F22O13.7; F22O13.8; F22O13.9; F22O13.10; F22O13.11; F22O13.12;
     F22O13.13; F22O13.14; F22O13.15; F22O13.16; F22O13.17; F22O13.18;
     F22O13.19; F22O13.20; F22O13.21; F22O13.22; F22O13.23; F22O13.24;
     F22O13.25; F22O13.26; F22O13.27; F22O13.28; F22O13.29; F22O13.30;
     F22O13.31; F22O13.32; F22O13.33; F22O13.34; F22O13.35.

AC004136    AC004136   110507bp    DNA      HTG      24-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T8K22'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 6 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004261    AC004261    92987bp    DNA      HTG      24-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3K9'
     genomic sequence near marker 'CIC11C08'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004473    AC004473   119407bp    DNA      HTG      24-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     T13D8 sequence; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004482    AC004482    97213bp    DNA      HTG      18-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27L4'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004512    AC004512    87192bp    DNA      PLN      22-APR-1998
    Arabidopsis thaliana chromosome 1 BAC T8F5 sequence, complete sequence.
    HTG.

AC004521    AC004521   118327bp    DNA      HTG      21-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F4I1'
     genomic sequence near marker 'm336'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004557    AC004557    98556bp    DNA      HTG      21-APR-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F17L21; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC004484  AC004484    82212bp    DNA      PLN      22-APR-1998
    Arabidopsis thaliana chromosome II BAC T1D16 genomic sequence, complete
     sequence.
    HTG; T1D16.1; putative peroxisome assembly protein PER8; T1D16.2;
     T1D16.3; receptor protein kinase, ERECTA; T1D16.4; MADS box protein
     AGL33; T1D16.5; T1D16.6; G protein alpha subunit 1, GPA1; T1D16.7;
     protein kinase ARSK1; T1D16.8; T1D16.9; T1D16.10; putative steroid
     dehydrogenase; T1D16.11; putative beta-ketoacyl-CoA synthase; T1D16.12;
     T1D16.13; nodulin-35 homologue; T1D16.14; T1D16.15; T1D16.16; T1D16.17;
     T1D16.18; SF16-like protein; T1D16.19; putative thromboxane-A synthase;
     T1D16.20.

ATF1C12     AL022224   111945bp    DNA      PLN      14-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F1C12 (ESSAII project).
    F1C12.10; hypothetical protein; F1C12.20; F1C12.30; vacuolar sorting
     receptor-like protein; F1C12.40; F1C12.50; F1C12.60; leucine rich
     repeat-like protein; F1C12.70; putative protein; F1C12.80; Glu-rich
     protein; F1C12.90; F1C12.100; retrotransposon like protein (fragment);
     F1C12.110; F1C12.120; terpene cyclase like protein; F1C12.130; cadinene
     synthase like protein; F1C12.140; F1C12.150; F1C12.160; cytochrome p450
     like protein; F1C12.170; F1C12.180; endomembrane-associated protein;
     F1C12.190; CLV1 receptor kinase like protein; F1C12.195; F1C12.200;
     F1C12.211; F1C12.220; F1C12.230; CTP synthase like protein.

ATZ95764    Z95764      135bp    mRNA     PLN      16-APR-1998
    Arabidopsis thaliana mRNA for AtMYB40 protein.
    AtMYB40 gene; AtMYB40.

ATZ95777    Z95777      135bp    mRNA     PLN      16-APR-1998
    Arabidopsis thaliana mRNA for AtMYB54 protein.
    AtMYB54 gene; AtMYB54.

ATZ95778    Z95778      135bp    mRNA     PLN      16-APR-1998
    Arabidopsis thaliana mRNA for AtMYB56 R2R3-MYB transcription factor.
    AtMYB56 gene; transcription factor; AtMYB56; R2R3-MYB transcription
     factor.

ATZ95788    Z95788      135bp    mRNA     PLN      16-APR-1998
    Arabidopsis thaliana mRNA for AtMYB65 protein.
    AtMYB65 gene; AtMYB65.

ATZ95791    Z95791      135bp    mRNA     PLN      16-APR-1998
    Arabidopsis thaliana mRNA for AtMYB68 protein.
    AtMYB68 gene; AtMYB68.

=========== Updated Sequence Features/Annotations  =============

AF021244    AF021244     1188bp    mRNA     PLN      17-APR-1998
    Arabidopsis thaliana coronatine-induced protein 1 (CORI1) mRNA, complete
     cds.
    CORI1; coronatine-induced protein 1.

ATAC002505  AC002505 AC003008   115851bp    DNA      PLN      22-APR-1998
    Arabidopsis thaliana chromosome II BAC T9J22 genomic sequence, complete
     sequence.
    HTG; T9J22.1; T9J22.2; putative peroxisome assembly protein PER8;
     T9J22.3; similar to peroxisomal Ca-dependent solute carrier; T9J22.4;
     T9J22.5; Cf-2.2 like protein; T9J22.6; serpin-like protein; T9J22.7;
     T9J22.8; SF16 like protein; T9J22.9; putative
     phosphatidylinositol-4-phosphate 5-kinase; T9J22.10; cyclin-like
     protein; T9J22.11; putative pectinesterase; T9J22.12; T9J22.13;
     T9J22.14; T9J22.15; putative flavonol 3-o-glucosyltransferase; T9J22.16;
     T9J22.17; T9J22.18; putative permease; T9J22.19; T9J22.20; AR781;
     T9J22.21; T9J22.22; T9J22.23; putative patatin; T9J22.24; myosin heavy
     chain-like protein; T9J22.25; T9J22.26; T9J22.27; putative
     beta-1,3-glucanase; T9J22.28; T9J22.29; putative polygalacturonase;
     T9J22.30.

ATF6H11     AL021684   118086bp    DNA      PLN      22-APR-1998
    Arabidopsis thaliana DNA chromosome 5, BAC clone F6H11 (ESSAII project).
    F6H11.10; predicted protein; F6H11.20; DEAD box ATP dependent helicase
     protein; F6H11.30; F6H11.40; F6H11.50; F6H11.60; LRR-like protein;
     F6H11.70; F6H11.80; F6H11.90; 1-aminocyclopropane-1-carboxylate
     synthase; ACS5; F6H11.100; myb - related protein; F6H11.110; F6H11.120;
     lysosomal Pro-X carboxypeptidase - like protein; F6H11.130; oxoglutarate
     dehydrogenase - like protein; F6H11.140; endoxyloglucan tranferase-like
     protein; F6H11.150; pyridoxal-phosphate-dependent aminotransferase -
     like protein; F6H11.160; receptor protein kinase - like protein;
     F6H11.170; F6H11.180; F6H11.190; phosphoenolpyruvate carboxykinase (ATP)
     - like protein; F6H11.200; retrotransposon - like protein; F6H11.210;
     auxin-induced protein IAA9.

ATF8F16     AL021633    93037bp    DNA      PLN      16-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F8F16 (ESSAII project).
    F8F16.10; predicted protein; F8F16.30; DNA topoisomerase like- protein;
     F8F16.40; protein kinase-like protein; F8F16.50; putative protein;
     F8F16.60; F8F16.70; receptor kinase - like protein; F8F16.80;
     hypothetical protein; F8F16.90; F8F16.100; F8F16.110; F8F16.120;
     multicatalytic endopeptidase complex, proteasome precursor, beta
     subunit; F8F16.130; AIG2-like protein; F8F16.140; auxin induced
     like-protein; F8F16.150; F8F16.160; F8F16.170; F8F16.180; F8F16.190;
     F8F16.200; F8F16.210; F8F16.220; F8F16.230; F8F16.240; putative zinc
     finger protein; F8F16.250.

ATHMTRIPR   L28828     2725bp    DNA      PLN      22-APR-1998
    Arabidopsis thaliana ribosomal protein S11 gene, complete cds.
    ribosomal protein S11.

ATHTHIOGL   L11454     1791bp    mRNA     PLN      17-APR-1998
    Arabidopsis thaliana thioglucosidase mRNA, complete cds.
    thioglucosidase.

ATRPS10     X98346     2172bp    DNA      PLN      18-APR-1998
    A.thaliana rps10 gene.
    ribosomal protein S10; rps10; mitochondrial ribosomal protein S10.

ATT10I14    AL021712    73037bp    DNA      PLN      16-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone T10I14 (ESSAII project).
    T10I14.10; putative protein; T10I14.20; hypothetical protein; T10I14.30;
     potassium channel protein AKT3; T10I14.40; T10I14.50; nifU-like protein;
     T10I14.60; T10I14.70; fibrillin precursor-like protein; T10I14.80;
     T10I14.90; T10I14.100; T10I14.110; T10I14.120; T10I14.130; T10I14.140;
     T10I14.150; T10I14.160; T10I14.170; T10I14.180; T10I14.190; T10I14.210.

ATU91995    U91995     3473bp    mRNA     PLN      17-APR-1998
    Arabidopsis thaliana Argonaute protein (AGO1) mRNA, complete cds.
    AGO1; Argonaute protein.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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