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New Arabidopsis DNA 01-Aug-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sun Aug 2 12:40:15 EST 1998


====================== New DNA Sequences =======================

AC005322    AC005322   113390bp    DNA      HTG      23-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     T7A14 sequence; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AF016100    AF016100     1409bp    mRNA     PLN      26-JUL-1998
    Arabidopsis thaliana ACC oxidase (ACO2) mRNA, complete cds.
    ACO2; ACC oxidase.

AF047719    AF047719     1678bp    mRNA     PLN      28-JUL-1998
    Arabidopsis thaliana GA3 (GA3) mRNA, complete cds.
    GA3.

AF047720    AF047720     2935bp    DNA      PLN      28-JUL-1998
    Arabidopsis thaliana ecotype Landsberg erecta GA3 (GA3) gene, complete
     cds.
    GA3.

AF047721    AF047721     2618bp    DNA      PLN      28-JUL-1998
    Arabidopsis thaliana ecotype Columbia GA3 (GA3) gene, complete cds.
    GA3.

AF076979    AF076979     9517bp    DNA      PLN      28-JUL-1998
    Arabidopsis thaliana late-embryogenesis abundant M17 protein (M17),
     late-embryogenesis abundant M10 protein (M10), and putative
     strictosidine synthase (STS) genes, complete cds.
    M17; late-embryogenesis abundant M17 protein; M10; late-embryogenesis
     abundant M10 protein; STS; putative strictosidine synthase.

AF077528    AF077528     1939bp    mRNA     PLN      28-JUL-1998
    Arabidopsis thaliana importin alpha mRNA, complete cds.
    importin alpha.

AF077855    AF077855     4799bp    DNA      PLN      29-JUL-1998
    Arabidopsis thaliana flower-specific pectin methylesterase precursor
     (PME4) gene, complete cds.
    PME4; flower-specific pectin methylesterase precursor; flower-specific
     pectin methylesterase.

AF078080    AF078080     1973bp    mRNA     PLN      30-JUL-1998
    Arabidopsis thaliana isochorismate synthase mRNA, complete cds.
    isochorismate synthase.

==================== Updated DNA Sequences =====================

AC005167    AC005167   102375bp    DNA      HTG      24-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12A24'
     genomic sequence near marker 'mi398'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC005168    AC005168    95887bp    DNA      HTG      24-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12C20'
     genomic sequence near marker 'B68'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC005169    AC005169   132120bp    DNA      HTG      24-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'ATHC' BAC 'F6F22'
     genomic sequence near marker 'mi148'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC005170    AC005170   113015bp    DNA      HTG      24-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T29E15'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 6 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005171    AC005171   143869bp    DNA      HTG      24-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4E14'
     genomic sequence near marker 'mi310'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC003672  AC003672   109375bp    DNA      PLN      25-JUL-1998
    Arabidopsis thaliana chromosome II BAC F16B22 genomic sequence, complete
     sequence.
    HTG; F16B22.1; putative heme A:farnesyltransferase, 5' partial; F16B22.2;
     putative phosphoribosyl pyrophosphate synthetase; F16B22.3; putative
     glycosyl hydrolase; F16B22.4; F16B22.5; F16B22.6; F16B22.7; putative
     zinc finger protein; F16B22.8; dynamin-like protein phragmoplastin 12;
     F16B22.9; F16B22.10; small GTP-binding protein; F16B22.11; acyl carrier
     protein; F16B22.12; F16B22.13; F16B22.14; F16B22.15; putative glycosyl
     transferase; F16B22.16; putative ras protein; F16B22.17; putative casein
     kinase II beta subunit; F16B22.18; F16B22.19; F16B22.20; putative
     heterogeneous nuclear ribonucleoprotein A1; F16B22.21; F16B22.22;
     F16B22.23; PREG-like protein; F16B22.24; putative thiamin
     pyrophosphokinase; F16B22.25; F16B22.26; F16B22.27; F16B22.32; blue
     copper-binding protein II; F16B22.29; putative giberellin
     beta-hydroxylase; F16B22.30; putative triacyglycerol lipase; F16B22.31.

ATAC004481  AC004481   112763bp    DNA      PLN      24-JUL-1998
    Arabidopsis thaliana chromosome II BAC F13P17 genomic sequence, complete
     sequence.
    HTG; F13P17.1; F13P17.2; putative protein kinase; F13P17.3; putative
     permease; F13P17.4; F13P17.5; putative chromatin structural protein
     Supt5hp; F13P17.6; F13P17.7; F13P17.8; F13P17.9; putative protein
     transport protein SEC61 alpha subunit; F13P17.10; F13P17.11; F13P17.12;
     F13P17.13; putative Ser/Thr kinase; F13P17.14; ankyrin-like protein;
     F13P17.15; F13P17.16; putative zinc-finger protein; F13P17.17;
     F13P17.18; F13P17.19; F13P17.20; F13P17.21; putative selenium-binding
     protein; F13P17.22; F13P17.23; nodulin-26-like protein; F13P17.24;
     F13P17.25; photosystem II type I chlorophyll a/b binding protein;
     F13P17.26; putative photosystem II type I chlorophyll a/b binding
     protein; F13P17.27; MADS Box protein AGL29; F13P17.28; putative HMG
     protein; F13P17.29; F13P17.30; putative urease accessory protein;
     F13P17.31; putative ribosomal protein L18A; F13P17.32; putative
     cytochrome P450 protein; F13P17.33.

=========== Updated Sequence Features/Annotations  =============

AB005888    AB005888     1033bp    mRNA     PLN      25-JUL-1998
    Arabidopsis thaliana mRNA for ATMYB3, complete cds.
    ATMYB3; Atmyb3.

AB005889    AB005889     1364bp    mRNA     PLN      25-JUL-1998
    Arabidopsis thaliana mRNA for ATMYB4, complete cds.
    ATMYB4; Atmyb4.

AF009228    AF009228      895bp    mRNA     PLN      28-JUL-1998
    Arabidopsis thaliana NaCl-inducible Ca2+-binding protein (ACP1) mRNA,
     complete cds.
    ACP1; NaCl-inducible Ca2+-binding protein.

AF024648    AF024648     3330bp    mRNA     PLN      24-JUL-1998
    Arabidopsis thaliana receptor-like serine/threonine kinase (RKF1) mRNA,
     complete cds.
    RKF1; receptor-like serine/threonine kinase.

AF024649    AF024649     2160bp    mRNA     PLN      24-JUL-1998
    Arabidopsis thaliana receptor-like serine/threonine kinase (RKF2) mRNA,
     complete cds.
    RKF2; receptor-like serine/threonine kinase.

AF024650    AF024650     2010bp    mRNA     PLN      24-JUL-1998
    Arabidopsis thaliana receptor-like serine/threonine kinase (RKF3) mRNA,
     complete cds.
    RKF3; receptor-like serine/threonine kinase.

AF037362    AF037362     1807bp    mRNA     PLN      23-JUL-1998
    Arabidopsis thaliana ATA20 mRNA, complete cds.
    ATA20.

AF037589    AF037589      772bp    mRNA     PLN      25-JUL-1998
    Arabidopsis thaliana ATA7 mRNA, complete cds.
    ATA7.

AF037590    AF037590     1882bp    mRNA     PLN      25-JUL-1998
    Arabidopsis thaliana ATA27 mRNA, complete cds.
    ATA27.

AF039895    AF039895     4205bp    mRNA     PLN      29-JUL-1998
    Arabidopsis thaliana putative aldehyde oxidase (AO1) mRNA, complete cds.
    AO1; putative aldehyde oxidase.

AF039896    AF039896     1886bp    mRNA     PLN      29-JUL-1998
    Arabidopsis thaliana putative aldehyde oxidase (AO3) mRNA, partial cds.
    AO3; putative aldehyde oxidase.

AF039897    AF039897      880bp    mRNA     PLN      29-JUL-1998
    Arabidopsis thaliana putative aldehyde oxidase (AO2) mRNA, partial cds.
    AO2; putative aldehyde oxidase.

AF067789    AF067789     1215bp    mRNA     PLN      29-JUL-1998
    Arabidopsis thaliana tSNARE AtTLG2p (AtTLG2) mRNA, complete cds.
    AtTLG2; tSNARE AtTLG2p.

T2H3        AF075597    48689bp    DNA      PLN      29-JUL-1998
    Arabidopsis thaliana BAC T2H3.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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