New Arabidopsis DNA 08-Aug-1998
AtDB Project
arabidopsis-seq at genome.stanford.edu
Sat Aug 8 17:08:02 EST 1998
====================== New DNA Sequences =======================
AB010914 AB010914 4040bp mRNA PLN 07-AUG-1998
Arabidopsis thaliana mRNA for histidine kinase 1, complete cds.
histidine kinase 1.
AC005359 AC005359 93489bp DNA PLN 01-AUG-1998
REVERSE-COMPLEMENT OF: F23J3.GCG.SEQ CHECK: 2754 FROM: 1 TO: 93489,
complete sequence.
HTG.
AC005388 AC005388 94243bp DNA HTG 05-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
T22H22 sequence; HTGS phase 2, 2 ordered pieces.
HTG; HTGS_PHASE2.
AF017074 AF017074 633bp mRNA PLN 02-AUG-1998
Arabidopsis thaliana RNA polymerase I, II and III 16.5 kDa subunit
(AtRPABC16.5) mRNA, complete cds.
AtRPABC16.5; RNA polymerase I, II and III 16.5 kDa subunit.
AF019248 AF019248 903bp mRNA PLN 02-AUG-1998
Arabidopsis thaliana RNA polymerase I, II and III 24.3 kDa subunit
(AtRPABC24.3) mRNA, complete cds.
AtRPABC24.3; RNA polymerase I, II and III 24.3 kDa subunit.
AF039404 AF039404 921bp mRNA PLN 06-AUG-1998
Arabidopsis thaliana uclacyanin 3 (UCC3) mRNA, complete cds.
UCC3; uclacyanin 3.
AF056026 AF056026 2196bp mRNA PLN 03-AUG-1998
Arabidopsis thaliana auxin transport protein EIR1 (EIR1) mRNA, complete
cds.
EIR1; auxin transport protein EIR1.
AF061286 AF061286 3213bp mRNA PLN 02-AUG-1998
Arabidopsis thaliana gamma-adaptin 1 mRNA, complete cds.
gamma-adaptin 1.
AF064654 AF064654 780bp DNA PLN 01-AUG-1998
Arabidopsis thaliana NADH dehydrogenase subunit F (ndhF) gene,
chloroplast gene encoding chloroplast protein, partial cds.
ndhF; NADH dehydrogenase subunit F.
AF073361 AF073361 1974bp mRNA PLN 03-AUG-1998
Arabidopsis thaliana nitrate transporter NTL1 (NTL1) mRNA, complete cds.
NTL1; nitrate transporter NTL1.
AF076924 AF076924 1425bp mRNA PLN 06-AUG-1998
Arabidopsis thaliana polypyrimidine tract-binding protein homolog (PTB)
mRNA, complete cds.
PTB; polypyrimidine tract-binding protein homolog.
AF079503 AF079503 1707bp mRNA PLN 02-AUG-1998
Arabidopsis thaliana H-protein promoter binding factor-2a mRNA, complete
cds.
H-protein promoter binding factor-2a.
AF079504 AF079504 1495bp mRNA PLN 02-AUG-1998
Arabidopsis thaliana H-protein promoter binding factor-2b mRNA, complete
cds.
H-protein promoter binding factor-2b.
AF080173 AF080173 1365bp mRNA PLN 06-AUG-1998
Arabidopsis thaliana inositol 1,3,4-trisphosphate 5/6-kinase mRNA,
complete cds.
inositol 1,3,4-trisphosphate 5/6-kinase.
ATAJ1658 AJ001658 204bp DNA PLN 01-AUG-1998
Arabidopsis thaliana STP5 gene, partial.
hexose transporter; STP5 gene; STP5.
ATAJ1659 AJ001659 204bp DNA PLN 01-AUG-1998
Arabidopsis thaliana STP6 gene, partial.
hexose transporter; STP6 gene; STP6.
ATAJ1660 AJ001660 204bp DNA PLN 01-AUG-1998
Arabidopsis thaliana STP7 gene, partial.
hexose transporter; STP7 gene; STP7.
ATAJ1661 AJ001661 204bp DNA PLN 01-AUG-1998
Arabidopsis thaliana STP8 gene, partial.
hexose transporter; STP8 gene; STP8.
ATAJ1662 AJ001662 204bp DNA PLN 01-AUG-1998
Arabidopsis thaliana STP9 gene, partial.
hexose transporter; STP9 gene; STP.
ATAJ1663 AJ001663 204bp DNA PLN 01-AUG-1998
Arabidopsis thaliana STP10 gene, partial.
hexose transporter; STP10 gene; STP10.
ATAJ1664 AJ001664 204bp DNA PLN 01-AUG-1998
Arabidopsis thaliana STP11 gene, partial.
hexose transporter; STP11 gene; STP.
ATF8D20 AL031135 94315bp DNA PLN 29-JUL-1998
Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
F8D20.10; protein kinase - like protein; F8D20.20; putative protein;
F8D20.30; F8D20.40; F8D20.50; F8D20.60; homeodomain - like protein;
F8D20.70; hypothetical protein; F8D20.80; HMG delta protein; F8D20.90;
NAM / CUC2 -like protein; F8D20.100; F8D20.110; F8D20.120; F8D20.130;
cyclin 2b protein; F8D20.140; phosphoserine aminotransferase; F8D20.150;
F8D20.160; NAD+ dependent isocitrate dehydrogenase -like protein;
F8D20.170; F8D20.180; putative polygalacturonase; F8D20.190; F8D20.200;
F8D20.210; F8D20.220; F8D20.230; F8D20.240; F8D20.250; F8D20.260;
F8D20.270; F8D20.280; senescence-associated protein sen1; F8D20.290.
ATH9695 AJ009695 3344bp DNA PLN 24-JUL-1998
Arabidopsis thaliana wak4 gene.
wall-associated; receptor; wak4 gene, wall-associated kinase; wak4;
wall-associated kinase 4.
ATPIS1 AJ000539 955bp mRNA PLN 30-JUL-1998
Arabidopsis thaliana mRNA for phosphatidylinositol synthase.
phosphatidylinositol synthase; PIS1 gene; PIS1.
ATU68561 U68561 1416bp mRNA PLN 07-AUG-1998
Arabidopsis thaliana heat shock transcription factor (AtHSF21) mRNA,
partial cds.
AtHSF21; heat shock transcription factor.
ATU76297 U76297 658bp DNA PLN 06-AUG-1998
Arabidopsis thaliana plantacyanin gene, complete cds.
plantacyanin.
ATU76298 U76298 917bp mRNA PLN 07-AUG-1998
Arabidopsis thaliana uclacyanin I mRNA, complete cds.
uclacyanin I.
ATU76299 U76299 872bp mRNA PLN 07-AUG-1998
Arabidopsis thaliana uclacyanin II mRNA, complete cds.
uclacyanin II.
ATU76300 U76300 915bp mRNA PLN 06-AUG-1998
Arabidopsis thaliana copper protein mRNA, complete cds.
copper protein.
ATU77721 U77721 789bp mRNA PLN 06-AUG-1998
Arabidopsis thaliana putative copper protein II mRNA, complete cds.
putative copper protein II.
==================== Updated DNA Sequences =====================
AC004809 AC004809 89713bp DNA PLN 06-AUG-1998
Arabidopsis thaliana chromosome 1 BAC F13M7 sequence, complete sequence.
HTG.
AC005106 AC005106 84203bp DNA PLN 31-JUL-1998
Genomic sequence for Arabidopsis thaliana BAC T25N20, complete sequence.
HTG.
AC005287 AC005287 140529bp DNA HTG 30-JUL-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
F20D21 genomic sequence; HTGS phase 1, 5 unordered pieces.
HTG; HTGS_PHASE1.
ATAC004218 AC004218 102312bp DNA PLN 30-JUL-1998
Arabidopsis thaliana chromosome II BAC F12L6 genomic sequence, complete
sequence.
HTG; F12L6.1; putative ATP-binding-cassette protein, 3' partial; F12L6.2;
putative Ser/Thr protein kinase; F12L6.3; F12L6.4; putative ribosomal
protein L35; F12L6.5; F12L6.6; putative lysophospholipase; F12L6.7;
F12L6.8; F12L6.9; disease resistance response protein (206-d) like;
F12L6.10; F12L6.11; F12L6.12; ribosomal protein L23a; F12L6.13;
F12L6.14; putative P-glycoprotein, pgp1; F12L6.15; F12L6.16; F12L6.17;
Medicago nodulin N21-like protein; F12L6.18; F12L6.19; F12L6.20;
gibberellin-regulated protein (GASA5)-like; F12L6.21; putative
geranylgeranyl transferase type I beta subunit; F12L6.22; F12L6.23;
F12L6.24; F12L6.25; putative ribosomal protein S15a; F12L6.26; tRNA-Cys;
F12L6.27; F12L6.28; F12L6.29; putative dolichyl-phosphate
beta-glucosyltransferase; F12L6.30; putative beta-1,3-endoglucanase;
F12L6.31; F12L6.32; putative protein kinase.
ATAC004665 AC004665 101647bp DNA PLN 04-AUG-1998
Arabidopsis thaliana chromosome II BAC F4I18 genomic sequence, complete
sequence.
HTG; F4I18.1; F4I18.2; F4I18.3; F4I18.4; F4I18.5; putative cytochrome
p450; F4I18.6; plasma membrane intrinsic protein 1B; F4I18.7; putative
glycoprotein; F4I18.8; F4I18.9; F4I18.10; F4I18.11; putative protein
kinase; F4I18.12; F4I18.13; F4I18.14; putative beta-amylase; F4I18.15;
F4I18.16; F4I18.17; putative DNA-binding protein; F4I18.18; F4I18.19;
F4I18.20; DNA-binding protein, dbp; F4I18.21; putative ATP-dependent RNA
helicase; F4I18.22; putative transcription factor SF3; F4I18.23;
putative phosphomannomutase; F4I18.24; F4I18.25; putative cell division
protein (ftsY); F4I18.26; F4I18.27; F4I18.28; F4I18.29; F4I18.30;
F4I18.31; putative ribosomal protein S27; F4I18.32.
ATAC004683 AC004683 81467bp DNA PLN 05-AUG-1998
Arabidopsis thaliana chromosome II BAC T19C21 genomic sequence, complete
sequence.
HTG; T19C21.1; T19C21.2; putative protein kinase; T19C21.3; T19C21.4;
putative DNA binding protein; T19C21.5; T19C21.6; T19C21.7; T19C21.8;
T19C21.9; T19C21.10; T19C21.11; T19C21.12; peroxidase; T19C21.13;
T19C21.14; myosin heavy chain-like protein; T19C21.15; T19C21.16;
T19C21.17; putative AP2 domain containing protein; T19C21.18; T19C21.19;
T19C21.20; T19C21.21; putative cytoskeletal protein; T19C21.22; putative
ammonium transporter, 3' partial.
ATMGDGSYN AJ000331 1648bp mRNA PLN 30-JUL-1998
Arabidopsis thaliana mRNA for monogalactosyldiacylglycerol synthase.
mgd gene; monogalactosyldiacylglycerol synthase; mgd.
=========== Updated Sequence Features/Annotations =============
ATAJ5130 AJ005130 1418bp DNA PLN 27-JUL-1998
Arabidopsis thaliana Sbe2.2 gene, 5' region.
Sbe2.2 gene; Sbe2.2.
ATAJ644 AJ222644 1859bp mRNA PLN 24-JUL-1998
Arabidopsis thaliana NS1 mRNA for asparaginyl-tRNA synthetase.
asparaginyl-tRNA synthetase; NS1 gene; NS1.
ATAJ645 AJ222645 1055bp mRNA PLN 24-JUL-1998
Arabidopsis thaliana NS2 mRNA for asparaginyl-tRNA synthetase.
asparaginyl-tRNA synthetase; NS2 gene; NS2.
ATAJ646 AJ222646 3117bp mRNA PLN 24-JUL-1998
Arabidopsis thaliana mRNA for G2484-1 protein.
G2484-1 gene; G2484-1.
ATCONSTAN X94937 S77098 1124bp mRNA PLN 27-JUL-1998
A.thaliana mRNA for CONSTANS protein.
constans gene; CONSTANS protein; constans.
ATF7J7 AL021960 91390bp DNA PLN 31-JUL-1998
Arabidopsis thaliana DNA chromosome 4, BAC clone F7J7 (ESSAII project).
F7J7.10; putative protein (fragment); F7J7.20; putative protein; F7J7.30;
adrenodoxin - like protein; F7J7.40; UV-damaged DNA-binding protein-
like; F7J7.50; G10 - like protein; F7J7.60; amino acid transport protein
AAT1; F7J7.70; hypothetical protein; F7J7.80; F7J7.90; F7J7.100;
F7J7.110; F7J7.120; F7J7.130; F7J7.140; gibberellin 20-oxidase - like
protein; F7J7.150; F7J7.160; F7J7.170; receptor kinase - like protein;
F7J7.180; F7J7.190; F7J7.200; F7J7.210; kinesin-related protein katA;
F7J7.220; photosystem II oxygen-evolving complex protein 3 - like;
F7J7.230.
ATMYBR1 Z54136 1195bp mRNA PLN 30-JUL-1998
A.thaliana mRNA for MYB-related protein (1195 bp).
MYB-related protein.
ATMYBR2 Z54137 1107bp mRNA PLN 30-JUL-1998
A.thaliana mRNA for MYB-related protein (1107 bp).
MYB-related protein.
ATSTO X95572 1033bp mRNA PLN 27-JUL-1998
A.thaliana mRNA for salt-tolerance protein.
salt-tolerance protein; STO gene; STO.
ATU68017 U68017 1422bp mRNA PLN 06-AUG-1998
Arabidopsis thaliana heat shock transcription factor (AtHSF4) mRNA,
complete cds.
AtHSF4; heat shock transcription factor.
F8K4 AC004392 115641bp DNA PLN 04-AUG-1998
Arabidopsis thaliana chromosome 1 BAC F8K4 sequence, complete sequence.
HTG; F8K4.1; F8K4.2; F8K4.3; F8K4.4; F8K4.5; F8K4.6; F8K4.7; F8K4.8;
tRNA-OTHER; F8K4.9; F8K4.10; F8K4.11; F8K4.12; F8K4.13; F8K4.14;
F8K4.15; F8K4.16; F8K4.17; F8K4.18; F8K4.19; F8K4.20; F8K4.21; F8K4.22;
F8K4.23; F8K4.24.
T15F16 AF076275 97494bp DNA PLN 03-AUG-1998
Arabidopsis thaliana BAC T15F16.
T15F16.7; T15F16.8; T15F16.6; T15F16.9; T15F16.10; T15F16.11; T15F16.12;
T15F16.13; T15F16.5; T15F16.4; T15F16.3; T15F16.2; T15F16.1; T15F16.14.
T24H24 AF075598 88848bp DNA PLN 03-AUG-1998
Arabidopsis thaliana BAC T24H24.
T24H24.7; T24H24.6; T24H24.9; T24H24.19; T24H24.18; T24H24.20; T24H24.21;
T24H24.11; T24H24.5; T24H24.12; T24H24.13; T24H24.15; T24H24.4;
T24H24.16; T24H24.3; T24H24.17; T24H24.2; T24H24.1.
T24M8 AF077409 68251bp DNA PLN 03-AUG-1998
Arabidopsis thaliana BAC T24M8.
T24M8.2; T24M8.3; T24M8.4; T24M8.5; T24M8.7; T24M8.6; T24M8.8; T24M8.9;
T24M8.10.
T27D20 AF076274 80446bp DNA PLN 03-AUG-1998
Arabidopsis thaliana BAC T27D20.
T27D20.7; T27D20.5; T27D20.4; T27D20.8; T27D20.3; T27D20.19; T27D20.2;
T27D20.9; T27D20.10; T27D20.11; T27D20.12; T27D20.13; T27D20.16;
T27D20.1; T27D20.18.
T2H3 AF075597 48689bp DNA PLN 03-AUG-1998
Arabidopsis thaliana BAC T2H3.
T2H3.7; T2H3.6; T2H3.5; T2H3.8; T2H3.4; T2H3.9; T2H3.10; T2H3.11;
T2H3.15; T2H3.3; T2H3.12; T2H3.2; T2H3.13; T2H3.1; T2H3.14.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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