New Arabidopsis DNA 08-Aug-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Aug 8 17:08:02 EST 1998


====================== New DNA Sequences =======================

AB010914    AB010914     4040bp    mRNA     PLN      07-AUG-1998
    Arabidopsis thaliana mRNA for histidine kinase 1, complete cds.
    histidine kinase 1.

AC005359    AC005359    93489bp    DNA      PLN      01-AUG-1998
    REVERSE-COMPLEMENT OF: F23J3.GCG.SEQ  CHECK: 2754  FROM: 1  TO: 93489,
     complete sequence.
    HTG.

AC005388    AC005388    94243bp    DNA      HTG      05-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     T22H22 sequence; HTGS phase 2, 2 ordered pieces.
    HTG; HTGS_PHASE2.

AF017074    AF017074      633bp    mRNA     PLN      02-AUG-1998
    Arabidopsis thaliana RNA polymerase I, II and III 16.5 kDa subunit
     (AtRPABC16.5) mRNA, complete cds.
    AtRPABC16.5; RNA polymerase I, II and III 16.5 kDa subunit.

AF019248    AF019248      903bp    mRNA     PLN      02-AUG-1998
    Arabidopsis thaliana RNA polymerase I, II and III 24.3 kDa subunit
     (AtRPABC24.3) mRNA, complete cds.
    AtRPABC24.3; RNA polymerase I, II and III 24.3 kDa subunit.

AF039404    AF039404      921bp    mRNA     PLN      06-AUG-1998
    Arabidopsis thaliana uclacyanin 3 (UCC3) mRNA, complete cds.
    UCC3; uclacyanin 3.

AF056026    AF056026     2196bp    mRNA     PLN      03-AUG-1998
    Arabidopsis thaliana auxin transport protein EIR1 (EIR1) mRNA, complete
     cds.
    EIR1; auxin transport protein EIR1.

AF061286    AF061286     3213bp    mRNA     PLN      02-AUG-1998
    Arabidopsis thaliana gamma-adaptin 1 mRNA, complete cds.
    gamma-adaptin 1.

AF064654    AF064654      780bp    DNA      PLN      01-AUG-1998
    Arabidopsis thaliana NADH dehydrogenase subunit F (ndhF) gene,
     chloroplast gene encoding chloroplast protein, partial cds.
    ndhF; NADH dehydrogenase subunit F.

AF073361    AF073361     1974bp    mRNA     PLN      03-AUG-1998
    Arabidopsis thaliana nitrate transporter NTL1 (NTL1) mRNA, complete cds.
    NTL1; nitrate transporter NTL1.

AF076924    AF076924     1425bp    mRNA     PLN      06-AUG-1998
    Arabidopsis thaliana polypyrimidine tract-binding protein homolog (PTB)
     mRNA, complete cds.
    PTB; polypyrimidine tract-binding protein homolog.

AF079503    AF079503     1707bp    mRNA     PLN      02-AUG-1998
    Arabidopsis thaliana H-protein promoter binding factor-2a mRNA, complete
     cds.
    H-protein promoter binding factor-2a.

AF079504    AF079504     1495bp    mRNA     PLN      02-AUG-1998
    Arabidopsis thaliana H-protein promoter binding factor-2b mRNA, complete
     cds.
    H-protein promoter binding factor-2b.

AF080173    AF080173     1365bp    mRNA     PLN      06-AUG-1998
    Arabidopsis thaliana inositol 1,3,4-trisphosphate 5/6-kinase mRNA,
     complete cds.
    inositol 1,3,4-trisphosphate 5/6-kinase.

ATAJ1658    AJ001658      204bp    DNA      PLN      01-AUG-1998
    Arabidopsis thaliana STP5 gene, partial.
    hexose transporter; STP5 gene; STP5.

ATAJ1659    AJ001659      204bp    DNA      PLN      01-AUG-1998
    Arabidopsis thaliana STP6 gene, partial.
    hexose transporter; STP6 gene; STP6.

ATAJ1660    AJ001660      204bp    DNA      PLN      01-AUG-1998
    Arabidopsis thaliana STP7 gene, partial.
    hexose transporter; STP7 gene; STP7.

ATAJ1661    AJ001661      204bp    DNA      PLN      01-AUG-1998
    Arabidopsis thaliana STP8 gene, partial.
    hexose transporter; STP8 gene; STP8.

ATAJ1662    AJ001662      204bp    DNA      PLN      01-AUG-1998
    Arabidopsis thaliana STP9 gene, partial.
    hexose transporter; STP9 gene; STP.

ATAJ1663    AJ001663      204bp    DNA      PLN      01-AUG-1998
    Arabidopsis thaliana STP10 gene, partial.
    hexose transporter; STP10 gene; STP10.

ATAJ1664    AJ001664      204bp    DNA      PLN      01-AUG-1998
    Arabidopsis thaliana STP11 gene, partial.
    hexose transporter; STP11 gene; STP.

ATF8D20     AL031135    94315bp    DNA      PLN      29-JUL-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
    F8D20.10; protein kinase - like protein; F8D20.20; putative protein;
     F8D20.30; F8D20.40; F8D20.50; F8D20.60; homeodomain - like protein;
     F8D20.70; hypothetical protein; F8D20.80; HMG delta protein; F8D20.90;
     NAM / CUC2 -like protein; F8D20.100; F8D20.110; F8D20.120; F8D20.130;
     cyclin 2b protein; F8D20.140; phosphoserine aminotransferase; F8D20.150;
     F8D20.160; NAD+ dependent isocitrate dehydrogenase -like protein;
     F8D20.170; F8D20.180; putative polygalacturonase; F8D20.190; F8D20.200;
     F8D20.210; F8D20.220; F8D20.230; F8D20.240; F8D20.250; F8D20.260;
     F8D20.270; F8D20.280; senescence-associated protein sen1; F8D20.290.

ATH9695     AJ009695     3344bp    DNA      PLN      24-JUL-1998
    Arabidopsis thaliana wak4 gene.
    wall-associated; receptor; wak4 gene, wall-associated kinase; wak4;
     wall-associated kinase 4.

ATPIS1      AJ000539      955bp    mRNA     PLN      30-JUL-1998
    Arabidopsis thaliana mRNA for phosphatidylinositol synthase.
    phosphatidylinositol synthase; PIS1 gene; PIS1.

ATU68561    U68561     1416bp    mRNA     PLN      07-AUG-1998
    Arabidopsis thaliana heat shock transcription factor (AtHSF21) mRNA,
     partial cds.
    AtHSF21; heat shock transcription factor.

ATU76297    U76297      658bp    DNA      PLN      06-AUG-1998
    Arabidopsis thaliana plantacyanin gene, complete cds.
    plantacyanin.

ATU76298    U76298      917bp    mRNA     PLN      07-AUG-1998
    Arabidopsis thaliana uclacyanin I mRNA, complete cds.
    uclacyanin I.

ATU76299    U76299      872bp    mRNA     PLN      07-AUG-1998
    Arabidopsis thaliana uclacyanin II mRNA, complete cds.
    uclacyanin II.

ATU76300    U76300      915bp    mRNA     PLN      06-AUG-1998
    Arabidopsis thaliana copper protein mRNA, complete cds.
    copper protein.

ATU77721    U77721      789bp    mRNA     PLN      06-AUG-1998
    Arabidopsis thaliana putative copper protein II mRNA, complete cds.
    putative copper protein II.

==================== Updated DNA Sequences =====================

AC004809    AC004809    89713bp    DNA      PLN      06-AUG-1998
    Arabidopsis thaliana chromosome 1 BAC F13M7 sequence, complete sequence.
    HTG.

AC005106    AC005106    84203bp    DNA      PLN      31-JUL-1998
    Genomic sequence for Arabidopsis thaliana BAC T25N20, complete sequence.
    HTG.

AC005287    AC005287   140529bp    DNA      HTG      30-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     F20D21 genomic sequence; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC004218  AC004218   102312bp    DNA      PLN      30-JUL-1998
    Arabidopsis thaliana chromosome II BAC F12L6 genomic sequence, complete
     sequence.
    HTG; F12L6.1; putative ATP-binding-cassette protein, 3' partial; F12L6.2;
     putative Ser/Thr protein kinase; F12L6.3; F12L6.4; putative ribosomal
     protein L35; F12L6.5; F12L6.6; putative lysophospholipase; F12L6.7;
     F12L6.8; F12L6.9; disease resistance response protein (206-d) like;
     F12L6.10; F12L6.11; F12L6.12; ribosomal protein L23a; F12L6.13;
     F12L6.14; putative P-glycoprotein, pgp1; F12L6.15; F12L6.16; F12L6.17;
     Medicago nodulin N21-like protein; F12L6.18; F12L6.19; F12L6.20;
     gibberellin-regulated protein (GASA5)-like; F12L6.21; putative
     geranylgeranyl transferase type I beta subunit; F12L6.22; F12L6.23;
     F12L6.24; F12L6.25; putative ribosomal protein S15a; F12L6.26; tRNA-Cys;
     F12L6.27; F12L6.28; F12L6.29; putative dolichyl-phosphate
     beta-glucosyltransferase; F12L6.30; putative beta-1,3-endoglucanase;
     F12L6.31; F12L6.32; putative protein kinase.

ATAC004665  AC004665   101647bp    DNA      PLN      04-AUG-1998
    Arabidopsis thaliana chromosome II BAC F4I18 genomic sequence, complete
     sequence.
    HTG; F4I18.1; F4I18.2; F4I18.3; F4I18.4; F4I18.5; putative cytochrome
     p450; F4I18.6; plasma membrane intrinsic protein 1B; F4I18.7; putative
     glycoprotein; F4I18.8; F4I18.9; F4I18.10; F4I18.11; putative protein
     kinase; F4I18.12; F4I18.13; F4I18.14; putative beta-amylase; F4I18.15;
     F4I18.16; F4I18.17; putative DNA-binding protein; F4I18.18; F4I18.19;
     F4I18.20; DNA-binding protein, dbp; F4I18.21; putative ATP-dependent RNA
     helicase; F4I18.22; putative transcription factor SF3; F4I18.23;
     putative phosphomannomutase; F4I18.24; F4I18.25; putative cell division
     protein (ftsY); F4I18.26; F4I18.27; F4I18.28; F4I18.29; F4I18.30;
     F4I18.31; putative ribosomal protein S27; F4I18.32.

ATAC004683  AC004683    81467bp    DNA      PLN      05-AUG-1998
    Arabidopsis thaliana chromosome II BAC T19C21 genomic sequence, complete
     sequence.
    HTG; T19C21.1; T19C21.2; putative protein kinase; T19C21.3; T19C21.4;
     putative DNA binding protein; T19C21.5; T19C21.6; T19C21.7; T19C21.8;
     T19C21.9; T19C21.10; T19C21.11; T19C21.12; peroxidase; T19C21.13;
     T19C21.14; myosin heavy chain-like protein; T19C21.15; T19C21.16;
     T19C21.17; putative AP2 domain containing protein; T19C21.18; T19C21.19;
     T19C21.20; T19C21.21; putative cytoskeletal protein; T19C21.22; putative
     ammonium transporter, 3' partial.

ATMGDGSYN   AJ000331     1648bp    mRNA     PLN      30-JUL-1998
    Arabidopsis thaliana mRNA for monogalactosyldiacylglycerol synthase.
    mgd gene; monogalactosyldiacylglycerol synthase; mgd.

=========== Updated Sequence Features/Annotations  =============

ATAJ5130    AJ005130     1418bp    DNA      PLN      27-JUL-1998
    Arabidopsis thaliana Sbe2.2 gene, 5' region.
    Sbe2.2 gene; Sbe2.2.

ATAJ644     AJ222644     1859bp    mRNA     PLN      24-JUL-1998
    Arabidopsis thaliana NS1 mRNA for asparaginyl-tRNA synthetase.
    asparaginyl-tRNA synthetase; NS1 gene; NS1.

ATAJ645     AJ222645     1055bp    mRNA     PLN      24-JUL-1998
    Arabidopsis thaliana NS2 mRNA for asparaginyl-tRNA synthetase.
    asparaginyl-tRNA synthetase; NS2 gene; NS2.

ATAJ646     AJ222646     3117bp    mRNA     PLN      24-JUL-1998
    Arabidopsis thaliana mRNA for G2484-1 protein.
    G2484-1 gene; G2484-1.

ATCONSTAN   X94937 S77098     1124bp    mRNA     PLN      27-JUL-1998
    A.thaliana mRNA for CONSTANS protein.
    constans gene; CONSTANS protein; constans.

ATF7J7      AL021960    91390bp    DNA      PLN      31-JUL-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F7J7 (ESSAII project).
    F7J7.10; putative protein (fragment); F7J7.20; putative protein; F7J7.30;
     adrenodoxin - like protein; F7J7.40; UV-damaged DNA-binding protein-
     like; F7J7.50; G10 - like protein; F7J7.60; amino acid transport protein
     AAT1; F7J7.70; hypothetical protein; F7J7.80; F7J7.90; F7J7.100;
     F7J7.110; F7J7.120; F7J7.130; F7J7.140; gibberellin 20-oxidase - like
     protein; F7J7.150; F7J7.160; F7J7.170; receptor kinase - like protein;
     F7J7.180; F7J7.190; F7J7.200; F7J7.210; kinesin-related protein katA;
     F7J7.220; photosystem II oxygen-evolving complex protein 3 - like;
     F7J7.230.

ATMYBR1     Z54136     1195bp    mRNA     PLN      30-JUL-1998
    A.thaliana mRNA for MYB-related protein (1195 bp).
    MYB-related protein.

ATMYBR2     Z54137     1107bp    mRNA     PLN      30-JUL-1998
    A.thaliana mRNA for MYB-related protein (1107 bp).
    MYB-related protein.

ATSTO       X95572     1033bp    mRNA     PLN      27-JUL-1998
    A.thaliana mRNA for salt-tolerance protein.
    salt-tolerance protein; STO gene; STO.

ATU68017    U68017     1422bp    mRNA     PLN      06-AUG-1998
    Arabidopsis thaliana heat shock transcription factor (AtHSF4) mRNA,
     complete cds.
    AtHSF4; heat shock transcription factor.

F8K4        AC004392   115641bp    DNA      PLN      04-AUG-1998
    Arabidopsis thaliana chromosome 1 BAC F8K4 sequence, complete sequence.
    HTG; F8K4.1; F8K4.2; F8K4.3; F8K4.4; F8K4.5; F8K4.6; F8K4.7; F8K4.8;
     tRNA-OTHER; F8K4.9; F8K4.10; F8K4.11; F8K4.12; F8K4.13; F8K4.14;
     F8K4.15; F8K4.16; F8K4.17; F8K4.18; F8K4.19; F8K4.20; F8K4.21; F8K4.22;
     F8K4.23; F8K4.24.

T15F16      AF076275    97494bp    DNA      PLN      03-AUG-1998
    Arabidopsis thaliana BAC T15F16.
    T15F16.7; T15F16.8; T15F16.6; T15F16.9; T15F16.10; T15F16.11; T15F16.12;
     T15F16.13; T15F16.5; T15F16.4; T15F16.3; T15F16.2; T15F16.1; T15F16.14.

T24H24      AF075598    88848bp    DNA      PLN      03-AUG-1998
    Arabidopsis thaliana BAC T24H24.
    T24H24.7; T24H24.6; T24H24.9; T24H24.19; T24H24.18; T24H24.20; T24H24.21;
     T24H24.11; T24H24.5; T24H24.12; T24H24.13; T24H24.15; T24H24.4;
     T24H24.16; T24H24.3; T24H24.17; T24H24.2; T24H24.1.

T24M8       AF077409    68251bp    DNA      PLN      03-AUG-1998
    Arabidopsis thaliana BAC T24M8.
    T24M8.2; T24M8.3; T24M8.4; T24M8.5; T24M8.7; T24M8.6; T24M8.8; T24M8.9;
     T24M8.10.

T27D20      AF076274    80446bp    DNA      PLN      03-AUG-1998
    Arabidopsis thaliana BAC T27D20.
    T27D20.7; T27D20.5; T27D20.4; T27D20.8; T27D20.3; T27D20.19; T27D20.2;
     T27D20.9; T27D20.10; T27D20.11; T27D20.12; T27D20.13; T27D20.16;
     T27D20.1; T27D20.18.

T2H3        AF075597    48689bp    DNA      PLN      03-AUG-1998
    Arabidopsis thaliana BAC T2H3.
    T2H3.7; T2H3.6; T2H3.5; T2H3.8; T2H3.4; T2H3.9; T2H3.10; T2H3.11;
     T2H3.15; T2H3.3; T2H3.12; T2H3.2; T2H3.13; T2H3.1; T2H3.14.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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