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New Arabidopsis DNA 15-Aug-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Aug 15 09:28:17 EST 1998


====================== New DNA Sequences =======================

AB015138    AB015138     4648bp    DNA      PLN      07-AUG-1998
    Arabidopsis thaliana AVP3 gene for Vacuolar proton pyrophosphatase,
     complete cds.
    AVP3; Vacuolar proton pyrophosphatase.

AB016783    AB016783     4581bp    DNA      PLN      12-AUG-1998
    Arabidopsis thaliana gene for glutamine amidotransferase/cyclase, partial
     cds.
    glutamine amidotransferase/cyclase.

AC005395    AC005395    96027bp    DNA      HTG      07-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17H15'
     genomic sequence near marker 'B68'; HTGS phase 1, 9 unordered pieces.
    HTG; HTGS_PHASE1.

AC005396    AC005396    90469bp    DNA      HTG      07-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T26I20'
     genomic sequence near marker 'mi398'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC005397    AC005397   110583bp    DNA      HTG      13-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3F17'
     genomic sequence near marker 'CIC02E07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005398    AC005398    95961bp    DNA      HTG      07-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6B13'
     genomic sequence near marker 'mi398'; HTGS phase 1, 7 unordered pieces.
    HTG; HTGS_PHASE1.

AC005405    AC005405    94362bp    DNA      PLN      08-AUG-1998
    BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete
     sequence.
    HTG; TINY.

AF079487    AF079487      991bp    mRNA     PLN      10-AUG-1998
    Arabidopsis thaliana rac-like GTP binding protein Arac6 (Arac6) mRNA,
     complete cds.
    Arac6; rac-like GTP binding protein Arac6.

AF079800    AF079800      765bp    mRNA     PLN      13-AUG-1998
    Arabidopsis thaliana PSBY precursor (PSBY) mRNA, nuclear gene encoding
     chloroplast protein, complete cds.
    PSBY; PSBY precursor; PSBY-A1; PSBY-A2.

AF081201    AF081201     2806bp    mRNA     PLN      13-AUG-1998
    Arabidopsis thaliana villin 1 (VLN1) mRNA, complete cds.
    VLN1; villin 1.

AF081202    AF081202     3107bp    mRNA     PLN      13-AUG-1998
    Arabidopsis thaliana villin 2 (VLN2) mRNA, complete cds.
    VLN2; villin 2.

AF081203    AF081203     3335bp    mRNA     PLN      13-AUG-1998
    Arabidopsis thaliana villin 3 (VLN3) mRNA, complete cds.
    VLN3; villin 3.

ATAJ2625    AJ002625      710bp    DNA      PLN      11-AUG-1998
    Arabidopsis thaliana gypsy-like retrotransposon, Romani-At1, clone
     At46U/#e1808.
    gypsy-like retrotransposon.

ATAJ2626    AJ002626      731bp    DNA      PLN      11-AUG-1998
    Arabidopsis thaliana gypsy-like retrotransposon, Romani-At1, clone
     At46R/#e1816.
    gypsy-like retrotransposon.

ATH6309     AJ006309     5110bp    DNA      PLN      11-AUG-1998
    Arabidopsis thaliana gene encoding protein tyrosine phosphatase, ORF1 and
     ORF2 genes.
    ORF1; ORF2; protein tyrosine phosphatase; PTP1 gene; hypothetical
     protein; PTP1.

ATT6K22     AL031187    89219bp    DNA      PLN      06-AUG-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone T6K22 (ESSAII project).
    T6K22.10; T6K22.20; photosystem II oxygen-evolving complex protein 3 -
     like; T6K22.30; putative protein; T6K22.40; T6K22.50; T6K22.60;
     T6K22.70; hypothetical protein; T6K22.80; T6K22.90; putative
     transposable element; T6K22.100; receptor kinase - like protein;
     T6K22.110; receptor-like serine/threonine protein kinase ARK3;
     T6K22.120; serine/threonine kinase - like protein; T6K22.130;
     serine/threonine protein kinase - like protein; T6K22.140; T6K22.150;
     T6K22.160; T6K22.170; myb-related protein M4.

==================== Updated DNA Sequences =====================

AC004138    AC004138   104071bp    DNA      HTG      07-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17M13'
     genomic sequence near marker 'CIC11A04'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004561    AC004561   137379bp    DNA      HTG      07-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16P2'
     genomic sequence near marker 'mi54'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC004667    AC004667    98565bp    DNA      HTG      07-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4C15'
     genomic sequence near marker 've016'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC004680    AC004680    96989bp    DNA      HTG      07-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F23F1'
     genomic sequence near marker 'm283'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC004747  AC004747    87080bp    DNA      PLN      12-AUG-1998
    Arabidopsis thaliana chromosome II BAC T19L18 genomic sequence, complete
     sequence.
    HTG; T19L18.1; SF16-like protein, 5' partial; T19L18.2; putative
     thromboxin-A synthase; T19L18.3; T19L18.4; putative heat shock protein;
     T19L18.5; putative YME1 protein; T19L18.6; T19L18.7; T19L18.8; T19L18.9;
     T19L18.10; tRNA-Leu; T19L18.11; putative glycine dehydrogenase;
     T19L18.12; T19L18.13; T19L18.14; T19L18.15; T19L18.16; T19L18.17;
     putative antifungal protein; T19L18.18; T19L18.19; T19L18.20; T19L18.21;
     putative myrosinase-binding protein; T19L18.22; putative lectin receptor
     kinase; T19L18.23; T19L18.24; T19L18.25; alpha-vacuolar processing
     enzyme; T19L18.26.

AC004786    AC004786    94021bp    DNA      HTG      07-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20K9'
     genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005167    AC005167   102324bp    DNA      HTG      07-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12A24'
     genomic sequence near marker 'mi398'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005168    AC005168    95277bp    DNA      HTG      07-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12C20'
     genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC005169    AC005169   133481bp    DNA      HTG      07-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'ATHC' BAC 'F6F22'
     genomic sequence near marker 'mi148'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC005170    AC005170   107827bp    DNA      HTG      13-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T29E15'
     genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005278    AC005278    97906bp    DNA      HTG      08-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     F15K9 sequence; HTGS phase 2, 2 ordered pieces.
    HTG; HTGS_PHASE2.

AC005309    AC005309   152475bp    DNA      HTG      11-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17A22'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 11 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005310    AC005310    79188bp    DNA      HTG      13-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19D11'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005311    AC005311    88614bp    DNA      HTG      07-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16B12'
     genomic sequence near marker 'm283'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC005312    AC005312    89292bp    DNA      HTG      08-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16F16'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 8 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005313    AC005313   101200bp    DNA      HTG      07-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T18E12'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005314    AC005314    84582bp    DNA      HTG      08-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T32F12'
     genomic sequence near marker 've016'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC005315    AC005315   112247bp    DNA      HTG      08-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9I4'
     genomic sequence near marker 'mi54'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC004261  AC004261    91539bp    DNA      PLN      07-AUG-1998
    Arabidopsis thaliana chromosome II BAC T3K9 genomic sequence, complete
     sequence.
    HTG; T3K9.1; putative ferrodoxin-dependent glutamate synthase, 3'
     partial; T3K9.2; putative phosphatidylinositol-4-phosphate 5-kinase;
     T3K9.3; T3K9.4; T3K9.5; T3K9.6; T3K9.7; T3K9.8; T3K9.9; CPDK-related
     protein; T3K9.10; T3K9.11; T3K9.12; T3K9.13; calmodulin-related protein;
     T3K9.14; calcium binding protein; T3K9.15; T3K9.16; putative bzip
     protein; T3K9.17; putative RNA-binding protein; T3K9.18; T3K9.19;
     T3K9.20; T3K9.21; T3K9.22; T3K9.23; putative heat shock protein;
     T3K9.24; T3K9.25; T3K9.26; T3K9.27; T3K9.28.

ATAC004697  AC004697   113950bp    DNA      PLN      07-AUG-1998
    Arabidopsis thaliana chromosome II BAC T16B24 genomic sequence, complete
     sequence.
    HTG; T16B24.1; putative white protein; T16B24.2; T16B24.3; putative
     myrosinase-binding protein; T16B24.4; T16B24.5; T16B24.6; T16B24.7;
     putative CDP-diacylglycerol--glycerol-3-phosphate; putative
     CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;
     T16B24.8; T16B24.9; putative adenylate kinase; T16B24.10; T16B24.11;
     putative floral homeotic protein; T16B24.12; T16B24.13; T16B24.14;
     patatin-like protein; T16B24.15; T16B24.16; putative Mlo-hi protein;
     T16B24.17; T16B24.18; putative serine/threonine protein kinase;
     T16B24.19; T16B24.20; T16B24.21; T16B24.22; T16B24.23.

ATAC004747  AC004747    87080bp    DNA      PLN      12-AUG-1998
    Arabidopsis thaliana chromosome II BAC T19L18 genomic sequence, complete
     sequence.
    HTG; T19L18.1; SF16-like protein, 5' partial; T19L18.2; putative
     thromboxin-A synthase; T19L18.3; T19L18.4; putative heat shock protein;
     T19L18.5; putative YME1 protein; T19L18.6; T19L18.7; T19L18.8; T19L18.9;
     T19L18.10; tRNA-Leu; T19L18.11; putative glycine dehydrogenase;
     T19L18.12; T19L18.13; T19L18.14; T19L18.15; T19L18.16; T19L18.17;
     putative antifungal protein; T19L18.18; T19L18.19; T19L18.20; T19L18.21;
     putative myrosinase-binding protein; T19L18.22; putative lectin receptor
     kinase; T19L18.23; T19L18.24; T19L18.25; alpha-vacuolar processing
     enzyme; T19L18.26.

ATF18E5     AL022603    95266bp    DNA      PLN      06-AUG-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project).
    F18E5.10; F18E5.20; serine/threonine protein kinase; F18E5.30; F18E5.40;
     hypothetical protein; F18E5.50; putative protein; F18E5.60; myb-related
     protein; F18E5.70; putative membrane associated protein; F18E5.80;
     F18E5.90; F18E5.100; glucose transporter; F18E5.110; NADH dehydrogenase
     like protein; F18E5.120; F18E5.130; F18E5.140; F18E5.150; F18E5.160;
     F18E5.170; VP1 like protein; F18E5.180; F18E5.190; F18E5.200; putative
     NADPH quinone oxidoreductase; F18E5.210; F18E5.220; F18E5.230; Lsd1 like
     protein.

=========== Updated Sequence Features/Annotations  =============

AF043351    AF043351     1311bp    mRNA     PLN      11-AUG-1998
    Arabidopsis thaliana adenosine-5'-phosphosulfate-kinase (akn2) mRNA,
     complete cds.
    akn2; adenosine-5'-phosphosulfate-kinase.

AF062485    AF062485     3444bp    mRNA     PLN      08-AUG-1998
    Arabidopsis thaliana cellulose synthase mRNA, partial cds.
    cellulose synthase.

AF062640    AF062640     1212bp    mRNA     PLN      11-AUG-1998
    Arabidopsis thaliana metalloproteinase mRNA, complete cds.
    metalloproteinase.

ATDNAMRP4   AJ002584     6923bp    DNA      PLN      11-AUG-1998
    Arabidopsis thaliana DNA for the glutathione-conjugate transporter
     AtMRP4.
    AtMRP4.

ATU49937    U49937     1681bp    mRNA     PLN      13-AUG-1998
    Arabidopsis thaliana glutamate decarboxylase (GAD2) mRNA, complete cds.
    GAD2; glutamate decarboxylase.

D89620      D89620     4920bp    DNA      PLN      13-AUG-1998
    Arabidopsis thaliana DNA for glutathione reductase, complete cds.
    glutathione reductase; glutathione reductase precursor.

HSCOP1012   AJ000536      494bp    DNA      PLN      05-AUG-1998
    Arabidopsis thaliana COP1 gene, exons 10 to 12.
    cop1 gene; exon; COP1; COP1 protein.

HSCOP157    AJ000535      768bp    DNA      PLN      05-AUG-1998
    Arabidopsis thaliana COP1 gene, exons 5 to 7.
    cop1 gene; exon; COP1; COP1 protein.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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