New Arabidopsis DNA 22-Aug-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Aug 22 09:35:31 EST 1998


====================== New DNA Sequences =======================

AB008103    AB008103      877bp    mRNA     PLN      20-AUG-1998
    Arabidopsis thaliana AtERF-1 mRNA for ethylene responsive element binding
     factor 1, complete cds.
    ERF domain; AtERF-1; ethylene responsive element binding factor 1.

AB008104    AB008104      921bp    mRNA     PLN      20-AUG-1998
    Arabidopsis thaliana AtERF-2 mRNA for ethylene responsive element binding
     factor 2, complete cds.
    ERF domain; AtERF-2; ethylene responsive element binding factor 2.

AB008105    AB008105     1281bp    mRNA     PLN      20-AUG-1998
    Arabidopsis thaliana AtERF-3 mRNA for ethylene responsive element binding
     factor 3, complete cds.
    ERF domain; AtERF-3; ethylene responsive element binding factor 3.

AB008106    AB008106     1023bp    mRNA     PLN      20-AUG-1998
    Arabidopsis thaliana AtERF-4 mRNA for ethylene responsive element binding
     factor 4, complete cds.
    AtERF-4; ERF domain; ethylene responsive element binding factor 4.

AB008107    AB008107     1059bp    mRNA     PLN      20-AUG-1998
    Arabidopsis thaliana AtERF-5 mRNA for ethylene responsive element binding
     factor 5, complete cds.
    ERF domain; AtERF-5; ethylene responsive element binding factor 5.

AC005496    AC005496    97354bp    DNA      HTG      18-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T27A16'
     genomic sequence near marker 'mi54'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC005499    AC005499   140565bp    DNA      HTG      20-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6A23'
     genomic sequence near marker 've018'; HTGS phase 1, 16 unordered pieces.
    HTG; HTGS_PHASE1.

AF033586    AF033586      709bp    mRNA     PLN      20-AUG-1998
    Arabidopsis thaliana 9G8-like SR protein (SRZ-11) mRNA, complete cds.
    SRZ-11; 9G8-like SR protein.

AF033587    AF033587      998bp    mRNA     PLN      20-AUG-1998
    Arabidopsis thaliana SRZ-80 mRNA, complete cds.
    SRZ-80.

AF043518    AF043518     1029bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome subunit PAA1 (PAA1) mRNA, complete
     cds.
    PAA1; 20S proteasome subunit PAA1.

AF043519    AF043519     1113bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome subunit PAA2 (PAA2) mRNA, complete
     cds.
    PAA2; 20S proteasome subunit PAA2.

AF043520    AF043520     1006bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome subunit PAB1 (PAB1) mRNA, complete
     cds.
    PAB1; 20S proteasome subunit PAB1.

AF043521    AF043521     1017bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome subunit PAC1 (PAC1) mRNA, complete
     cds.
    PAC1; 20S proteasome subunit PAC1.

AF043522    AF043522     1108bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome subunit PAD1 (PAD1) mRNA, complete
     cds.
    PAD1; 20S proteasome subunit PAD1.

AF043523    AF043523      942bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome subunit PAD2 (PAD2) mRNA, complete
     cds.
    PAD2; 20S proteasome subunit PAD2.

AF043524    AF043524     1005bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome subunit PAE1 (PAE1) mRNA, complete
     cds.
    PAE1; 20S proteasome subunit PAE1.

AF043525    AF043525      983bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome subunit PAE2 (PAE2) mRNA, complete
     cds.
    PAE2; 20S proteasome subunit PAE2.

AF043526    AF043526     1086bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome subunit PAF1 (PAF1) mRNA, complete
     cds.
    PAF1; 20S proteasome subunit PAF1.

AF043527    AF043527      880bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome subunit PAF2 (PAF2) mRNA, complete
     cds.
    PAF2; 20S proteasome subunit PAF2.

AF043528    AF043528      958bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome subunit PAG1 (PAG1) mRNA, complete
     cds.
    PAG1; 20S proteasome subunit PAG1.

AF043529    AF043529     1035bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome subunit PBA1 (PBA1) mRNA, complete
     cds.
    PBA1; 20S proteasome subunit PBA1.

AF043530    AF043530     1068bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome beta subunit PBB1 (PBB1) mRNA,
     complete cds.
    PBB1; 20S proteasome beta subunit PBB1.

AF043531    AF043531     1085bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome beta subunit PBB2 (PBB2) mRNA,
     complete cds.
    PBB2; 20S proteasome beta subunit PBB2.

AF043532    AF043532      860bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome beta subunit PBC1 truncated protein
     (PBC1) mRNA, complete cds.
    PBC1; 20S proteasome beta subunit PBC1.

AF043533    AF043533     1128bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome beta subunit PBC2 (PBC2) mRNA,
     complete cds.
    PBC2; 20S proteasome beta subunit PBC2.

AF043534    AF043534      839bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome beta subunit PBD1 (PBD1) mRNA,
     complete cds.
    PBD1; 20S proteasome beta subunit PBD1.

AF043535    AF043535      828bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome beta subunit PBD2 (PBD2) mRNA,
     complete cds.
    PBD2; 20S proteasome beta subunit PBD2.

AF043536    AF043536     1031bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome beta subunit PBE1 (PBE1) mRNA,
     complete cds.
    PBE1; 20S proteasome beta subunit PBE1.

AF043537    AF043537      981bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome beta subunit PBF1 (PBF1) mRNA,
     complete cds.
    PBF1; 20S proteasome beta subunit PBF1.

AF043538    AF043538     1032bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana 20S proteasome beta subunit PBG1 (PBG1) mRNA,
     complete cds.
    PBG1; 20S proteasome beta subunit PBG1.

AF045674    AF045674     1223bp    DNA      PLN      18-AUG-1998
    Arabidopsis arenosa isolate ADC-N arginine decarboxylase (spe2) gene,
     partial cds.
    spe2; arginine decarboxylase.

AF045685    AF045685     1217bp    DNA      PLN      18-AUG-1998
    Arabidopsis arenosa isolate ADC-O arginine decarboxylase (spe2) gene,
     partial cds.
    spe2; arginine decarboxylase.

AF067773    AF067773     2321bp    mRNA     PLN      20-AUG-1998
    Arabidopsis thaliana glutamyl-tRNA synthetase mRNA, complete cds.
    glutamyl-tRNA synthetase.

AF080249    AF080249     3194bp    mRNA     PLN      18-AUG-1998
    Arabidopsis thaliana kinesin-like heavy chain (KATD) mRNA, complete cds.
    KATD; kinesin-like heavy chain.

AF081067    AF081067     3989bp    DNA      PLN      18-AUG-1998
    Arabidopsis thaliana IAA-Ala hydrolase (IAR3) gene, complete cds.
    IAR3; IAA-Ala hydrolase.

AF082158    AF082158     4677bp    DNA      PLN      18-AUG-1998
    Arabidopsis thaliana putative cysteine synthase gene, partial cds; and
     beta-glucosidase homolog (GLUC) gene, complete cds.
    putative cysteine synthase; GLUC; beta-glucosidase homolog.

AF082391    AF082391     1938bp    DNA      PLN      20-AUG-1998
    Arabidopsis thaliana protein kinase homolog (PK3) gene, complete cds.
    PK3; protein kinase homolog.

ATH7585     AJ007585      628bp    mRNA     PLN      17-AUG-1998
    Arabidopsis thaliana mRNA for IB1P8-4 protein.
    IB1P8-4 gene; IB1P8-4; IB1P8-4 protein.

ATH7586     AJ007586     1275bp    mRNA     PLN      17-AUG-1998
    Arabidopsis thaliana mRNA for src2-like protein.
    F7G19-6 gene; F7G19-6; src2-like protein.

ATH7587     AJ007587     1414bp    mRNA     PLN      17-AUG-1998
    Arabidopsis thaliana mRNA for monooxygenase 1.
    MO1 gene; monooxygenase; MO1.

ATH7588     AJ007588     1410bp    mRNA     PLN      17-AUG-1998
    Arabidopsis thaliana mRNA for monooxygenase 2.
    MO2 gene; monooxygenase; MO2.

ATH7589     AJ007589      219bp    mRNA     PLN      17-AUG-1998
    Arabidopsis thaliana mRNA for monooxygenase 3, partial.
    MO3 gene; monooxygenase; MO3.

ATU79524    U79524     1098bp    mRNA     PLN      19-AUG-1998
    Arabidopsis thaliana 1-aminocyclopropane-1-carboxylate synthase mRNA,
     partial cds.
    1-aminocyclopropane-1-carboxylate synthase.

==================== Updated DNA Sequences =====================

AC004138    AC004138   104016bp    DNA      HTG      19-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17M13'
     genomic sequence near marker 'CIC11A04'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004411    AC004411   108693bp    DNA      HTG      14-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14M4'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004667    AC004667    99399bp    DNA      HTG      14-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4C15'
     genomic sequence near marker 've016'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC004786  AC004786    86686bp    DNA      PLN      20-AUG-1998
    Arabidopsis thaliana chromosome II BAC T20K9 genomic sequence, complete
     sequence.
    HTG; T20K9.1; homeobox protein, HAT9; T20K9.2;
     1-aminocyclopropane-1-carboxylate synthase (ACS4); T20K9.3; T20K9.4;
     putative squalene epoxidase; T20K9.5; T20K9.6; putative bZIP protein;
     T20K9.7; T20K9.8; putative GTP-binding protein; T20K9.9; T20K9.10;
     T20K9.11; T20K9.12; putative amino-acid acetyltransferase; T20K9.13;
     putative serine carboxypeptidase I; T20K9.14; putative flavonol
     3-o-glucosyltransferase; T20K9.15; T20K9.16; putative chloroplast
     envelope Ca2+-ATPase; T20K9.17; T20K9.18; T20K9.19; T20K9.20.

AC005170    AC005170   107937bp    DNA      HTG      20-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T29E15'
     genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005310    AC005310    79188bp    DNA      HTG      15-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19D11'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005311    AC005311    87949bp    DNA      HTG      14-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16B12'
     genomic sequence near marker 'm283'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC005312    AC005312    90163bp    DNA      HTG      18-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16F16'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 6 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005313    AC005313    99517bp    DNA      HTG      18-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T18E12'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005315    AC005315   108393bp    DNA      HTG      19-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9I4'
     genomic sequence near marker 'mi54'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005395    AC005395   108241bp    DNA      HTG      18-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17H15'
     genomic sequence near marker 'B68'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC005397    AC005397   112131bp    DNA      HTG      20-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3F17'
     genomic sequence near marker 'CIC02E07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005489    AC005489   100896bp    DNA      HTG      15-AUG-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F14N23; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AF081066    AF081066     2169bp    DNA      PLN      16-AUG-1998
    Arabidopsis thaliana IAA-amino acid hydrolase homolog ILL3 (ILL3) gene,
     complete cds.
    ILL3; IAA-amino acid hydrolase homolog ILL3.

AF082157    AF082157     1737bp    mRNA     PLN      17-AUG-1998
    Arabidopsis thaliana beta-glucosidase (GLUC) mRNA, complete cds.
    GLUC; beta-glucosidase.

ATAC002388  AC002388    85534bp    DNA      PLN      15-AUG-1998
    Arabidopsis thaliana chromosome II BAC T13E15 genomic sequence, complete
     sequence.
    HTG; T13E15.1; T13E15.2; T13E15.3; T13E15.4; T13E15.5; TINY transcription
     factor isolog; T13E15.6; T13E15.7; T13E15.8; homeodomain-zipper protein,
     ATHB-4; T13E15.9; T13E15.10; cytochrome P450 isolog; T13E15.11;
     T13E15.12; T13E15.13; 60S ribosomal protein L30 isolog; T13E15.14;
     T13E15.15; EREBP isolog; T13E15.16; serine/threonine protein kinase
     isolog; T13E15.17; T13E15.18; triacyglycerol lipase isolog; T13E15.19;
     giberellin beta-hydroxylase isolog, 5' partial.

ATAC004680  AC004680    88543bp    DNA      PLN      15-AUG-1998
    Arabidopsis thaliana chromosome II BAC F23F1 genomic sequence, complete
     sequence.
    HTG; F23F1.1; putative Fe(II) transport protein; F23F1.2; high-affinity
     potassium transporter (AtKUP1); F23F1.3; sec13-related protein; F23F1.4;
     putative protein kinase; F23F1.5; F23F1.6; putative protein phosphatase
     2C; F23F1.7; F23F1.8; F23F1.9; putative ubiqinone reductase; F23F1.10;
     omega-3 fatty acid desaturase; F23F1.11; F23F1.12; cyclophilin;
     F23F1.13; F23F1.14; putative ABC transporter; F23F1.15; F23F1.16;
     F23F1.17.

ATAC004786  AC004786    86686bp    DNA      PLN      20-AUG-1998
    Arabidopsis thaliana chromosome II BAC T20K9 genomic sequence, complete
     sequence.
    HTG; T20K9.1; homeobox protein, HAT9; T20K9.2;
     1-aminocyclopropane-1-carboxylate synthase (ACS4); T20K9.3; T20K9.4;
     putative squalene epoxidase; T20K9.5; T20K9.6; putative bZIP protein;
     T20K9.7; T20K9.8; putative GTP-binding protein; T20K9.9; T20K9.10;
     T20K9.11; T20K9.12; putative amino-acid acetyltransferase; T20K9.13;
     putative serine carboxypeptidase I; T20K9.14; putative flavonol
     3-o-glucosyltransferase; T20K9.15; T20K9.16; putative chloroplast
     envelope Ca2+-ATPase; T20K9.17; T20K9.18; T20K9.19; T20K9.20.

ATAC005168  AC005168    87978bp    DNA      PLN      18-AUG-1998
    Arabidopsis thaliana chromosome II BAC F12C20 genomic sequence, complete
     sequence.
    HTG; F12C20.1; putative Myb protein; F12C20.2; putative C2H2 zinc finger
     protein; F12C20.3; putative ripening-associated protein; F12C20.4;
     F12C20.5; putative ABC transporter protein; F12C20.6; F12C20.7;
     F12C20.8; putative DNA-binding protein; F12C20.9; F12C20.10; F12C20.11;
     F12C20.12; F12C20.13; putative choline kinase; F12C20.14; putative AIG1
     protein; F12C20.15; F12C20.16; putative hydroxymethylglutaryl-CoA lyase
     precursor; F12C20.17; similar to salt-inducible protein; F12C20.18.

ATDEADBLH   Y11154     1573bp    mRNA     PLN      19-AUG-1998
    Arabidopsis thaliana mRNA for DEAD box-like RNA helicase, partial.
    DEAD box-like RNA helicase; RH1 gene; RH1.

ATU68561    U68561     1407bp    mRNA     PLN      15-AUG-1998
    Arabidopsis thaliana heat shock transcription factor 21 (AtHSF21) mRNA,
     partial cds.
    AtHSF21; heat shock transcription factor 21.

=========== Updated Sequence Features/Annotations  =============

AF039404    AF039404      921bp    mRNA     PLN      21-AUG-1998
    Arabidopsis thaliana uclacyanin 3 (UCC3) mRNA, complete cds.
    uclacyanin; stellacyanin; plantacyanin; early nodulin; phytocyanin;
     cupredoxin; blue copper protein; arabinogalactan protein; UCC3;
     uclacyanin 3.

ATF21P8     AL022347    85785bp    DNA      PLN      18-AUG-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F21P8 (ESSAII project).
    F21P8.10; putative protein; F21P8.20; protein kinase - like protein;
     F21P8.30; serine/threonine kinase - like protein; F21P8.40; F21P8.50;
     F21P8.60; F21P8.70; serine/threonine kinase -like protein; F21P8.80;
     F21P8.90; serine /threonine kinase - like protein; F21P8.100; F21P8.110;
     F21P8.120; F21P8.130; F21P8.140; F21P8.150; F21P8.160; serine/threonine
     kinase; F21P8.170; F21P8.180; F21P8.190; serine/threonine - like
     protein; F21P8.200; F21P8.210; F21P8.220; hypothetical protein;
     F21P8.230.

ATU68017    U68017     1422bp    mRNA     PLN      14-AUG-1998
    Arabidopsis thaliana heat shock transcription factor 4 (AtHSF4) mRNA,
     complete cds.
    AtHSF4; heat shock transcription factor 4.

ATU76297    U76297      658bp    DNA      PLN      21-AUG-1998
    Arabidopsis thaliana plantacyanin gene, complete cds.
    plantacyanin; stellacyanin; uclacyanin; early nodulin; phytocyanin;
     cupredoxin; blue copper protein; CBP.

ATU76300    U76300      915bp    mRNA     PLN      21-AUG-1998
    Arabidopsis thaliana copper protein mRNA, complete cds.
    early nodulin; uclacyanin; stellacyanin; plantacyanin; phytocyanin;
     cupredoxin; blue copper protein; arabinogalactan protein; copper
     protein.

ATU77721    U77721      789bp    mRNA     PLN      21-AUG-1998
    Arabidopsis thaliana putative copper protein II mRNA, complete cds.
    early nodulin; uclacyanin; stellacyanin; plantacyanin; phytocyanin;
     cupredoxin; blue copper protein; arabinogalactan protein; putative
     copper protein II.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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