New Arabidopsis DNA 22-Aug-1998
AtDB Project
arabidopsis-seq at genome.stanford.edu
Sat Aug 22 09:35:31 EST 1998
====================== New DNA Sequences =======================
AB008103 AB008103 877bp mRNA PLN 20-AUG-1998
Arabidopsis thaliana AtERF-1 mRNA for ethylene responsive element binding
factor 1, complete cds.
ERF domain; AtERF-1; ethylene responsive element binding factor 1.
AB008104 AB008104 921bp mRNA PLN 20-AUG-1998
Arabidopsis thaliana AtERF-2 mRNA for ethylene responsive element binding
factor 2, complete cds.
ERF domain; AtERF-2; ethylene responsive element binding factor 2.
AB008105 AB008105 1281bp mRNA PLN 20-AUG-1998
Arabidopsis thaliana AtERF-3 mRNA for ethylene responsive element binding
factor 3, complete cds.
ERF domain; AtERF-3; ethylene responsive element binding factor 3.
AB008106 AB008106 1023bp mRNA PLN 20-AUG-1998
Arabidopsis thaliana AtERF-4 mRNA for ethylene responsive element binding
factor 4, complete cds.
AtERF-4; ERF domain; ethylene responsive element binding factor 4.
AB008107 AB008107 1059bp mRNA PLN 20-AUG-1998
Arabidopsis thaliana AtERF-5 mRNA for ethylene responsive element binding
factor 5, complete cds.
ERF domain; AtERF-5; ethylene responsive element binding factor 5.
AC005496 AC005496 97354bp DNA HTG 18-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T27A16'
genomic sequence near marker 'mi54'; HTGS phase 1, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC005499 AC005499 140565bp DNA HTG 20-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6A23'
genomic sequence near marker 've018'; HTGS phase 1, 16 unordered pieces.
HTG; HTGS_PHASE1.
AF033586 AF033586 709bp mRNA PLN 20-AUG-1998
Arabidopsis thaliana 9G8-like SR protein (SRZ-11) mRNA, complete cds.
SRZ-11; 9G8-like SR protein.
AF033587 AF033587 998bp mRNA PLN 20-AUG-1998
Arabidopsis thaliana SRZ-80 mRNA, complete cds.
SRZ-80.
AF043518 AF043518 1029bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome subunit PAA1 (PAA1) mRNA, complete
cds.
PAA1; 20S proteasome subunit PAA1.
AF043519 AF043519 1113bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome subunit PAA2 (PAA2) mRNA, complete
cds.
PAA2; 20S proteasome subunit PAA2.
AF043520 AF043520 1006bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome subunit PAB1 (PAB1) mRNA, complete
cds.
PAB1; 20S proteasome subunit PAB1.
AF043521 AF043521 1017bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome subunit PAC1 (PAC1) mRNA, complete
cds.
PAC1; 20S proteasome subunit PAC1.
AF043522 AF043522 1108bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome subunit PAD1 (PAD1) mRNA, complete
cds.
PAD1; 20S proteasome subunit PAD1.
AF043523 AF043523 942bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome subunit PAD2 (PAD2) mRNA, complete
cds.
PAD2; 20S proteasome subunit PAD2.
AF043524 AF043524 1005bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome subunit PAE1 (PAE1) mRNA, complete
cds.
PAE1; 20S proteasome subunit PAE1.
AF043525 AF043525 983bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome subunit PAE2 (PAE2) mRNA, complete
cds.
PAE2; 20S proteasome subunit PAE2.
AF043526 AF043526 1086bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome subunit PAF1 (PAF1) mRNA, complete
cds.
PAF1; 20S proteasome subunit PAF1.
AF043527 AF043527 880bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome subunit PAF2 (PAF2) mRNA, complete
cds.
PAF2; 20S proteasome subunit PAF2.
AF043528 AF043528 958bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome subunit PAG1 (PAG1) mRNA, complete
cds.
PAG1; 20S proteasome subunit PAG1.
AF043529 AF043529 1035bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome subunit PBA1 (PBA1) mRNA, complete
cds.
PBA1; 20S proteasome subunit PBA1.
AF043530 AF043530 1068bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome beta subunit PBB1 (PBB1) mRNA,
complete cds.
PBB1; 20S proteasome beta subunit PBB1.
AF043531 AF043531 1085bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome beta subunit PBB2 (PBB2) mRNA,
complete cds.
PBB2; 20S proteasome beta subunit PBB2.
AF043532 AF043532 860bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome beta subunit PBC1 truncated protein
(PBC1) mRNA, complete cds.
PBC1; 20S proteasome beta subunit PBC1.
AF043533 AF043533 1128bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome beta subunit PBC2 (PBC2) mRNA,
complete cds.
PBC2; 20S proteasome beta subunit PBC2.
AF043534 AF043534 839bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome beta subunit PBD1 (PBD1) mRNA,
complete cds.
PBD1; 20S proteasome beta subunit PBD1.
AF043535 AF043535 828bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome beta subunit PBD2 (PBD2) mRNA,
complete cds.
PBD2; 20S proteasome beta subunit PBD2.
AF043536 AF043536 1031bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome beta subunit PBE1 (PBE1) mRNA,
complete cds.
PBE1; 20S proteasome beta subunit PBE1.
AF043537 AF043537 981bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome beta subunit PBF1 (PBF1) mRNA,
complete cds.
PBF1; 20S proteasome beta subunit PBF1.
AF043538 AF043538 1032bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana 20S proteasome beta subunit PBG1 (PBG1) mRNA,
complete cds.
PBG1; 20S proteasome beta subunit PBG1.
AF045674 AF045674 1223bp DNA PLN 18-AUG-1998
Arabidopsis arenosa isolate ADC-N arginine decarboxylase (spe2) gene,
partial cds.
spe2; arginine decarboxylase.
AF045685 AF045685 1217bp DNA PLN 18-AUG-1998
Arabidopsis arenosa isolate ADC-O arginine decarboxylase (spe2) gene,
partial cds.
spe2; arginine decarboxylase.
AF067773 AF067773 2321bp mRNA PLN 20-AUG-1998
Arabidopsis thaliana glutamyl-tRNA synthetase mRNA, complete cds.
glutamyl-tRNA synthetase.
AF080249 AF080249 3194bp mRNA PLN 18-AUG-1998
Arabidopsis thaliana kinesin-like heavy chain (KATD) mRNA, complete cds.
KATD; kinesin-like heavy chain.
AF081067 AF081067 3989bp DNA PLN 18-AUG-1998
Arabidopsis thaliana IAA-Ala hydrolase (IAR3) gene, complete cds.
IAR3; IAA-Ala hydrolase.
AF082158 AF082158 4677bp DNA PLN 18-AUG-1998
Arabidopsis thaliana putative cysteine synthase gene, partial cds; and
beta-glucosidase homolog (GLUC) gene, complete cds.
putative cysteine synthase; GLUC; beta-glucosidase homolog.
AF082391 AF082391 1938bp DNA PLN 20-AUG-1998
Arabidopsis thaliana protein kinase homolog (PK3) gene, complete cds.
PK3; protein kinase homolog.
ATH7585 AJ007585 628bp mRNA PLN 17-AUG-1998
Arabidopsis thaliana mRNA for IB1P8-4 protein.
IB1P8-4 gene; IB1P8-4; IB1P8-4 protein.
ATH7586 AJ007586 1275bp mRNA PLN 17-AUG-1998
Arabidopsis thaliana mRNA for src2-like protein.
F7G19-6 gene; F7G19-6; src2-like protein.
ATH7587 AJ007587 1414bp mRNA PLN 17-AUG-1998
Arabidopsis thaliana mRNA for monooxygenase 1.
MO1 gene; monooxygenase; MO1.
ATH7588 AJ007588 1410bp mRNA PLN 17-AUG-1998
Arabidopsis thaliana mRNA for monooxygenase 2.
MO2 gene; monooxygenase; MO2.
ATH7589 AJ007589 219bp mRNA PLN 17-AUG-1998
Arabidopsis thaliana mRNA for monooxygenase 3, partial.
MO3 gene; monooxygenase; MO3.
ATU79524 U79524 1098bp mRNA PLN 19-AUG-1998
Arabidopsis thaliana 1-aminocyclopropane-1-carboxylate synthase mRNA,
partial cds.
1-aminocyclopropane-1-carboxylate synthase.
==================== Updated DNA Sequences =====================
AC004138 AC004138 104016bp DNA HTG 19-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17M13'
genomic sequence near marker 'CIC11A04'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC004411 AC004411 108693bp DNA HTG 14-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14M4'
genomic sequence near marker 'CIC06C03'; HTGS phase 1, 2 unordered
pieces.
HTG; HTGS_PHASE1.
AC004667 AC004667 99399bp DNA HTG 14-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4C15'
genomic sequence near marker 've016'; HTGS phase 1, 4 unordered pieces.
HTG; HTGS_PHASE1.
ATAC004786 AC004786 86686bp DNA PLN 20-AUG-1998
Arabidopsis thaliana chromosome II BAC T20K9 genomic sequence, complete
sequence.
HTG; T20K9.1; homeobox protein, HAT9; T20K9.2;
1-aminocyclopropane-1-carboxylate synthase (ACS4); T20K9.3; T20K9.4;
putative squalene epoxidase; T20K9.5; T20K9.6; putative bZIP protein;
T20K9.7; T20K9.8; putative GTP-binding protein; T20K9.9; T20K9.10;
T20K9.11; T20K9.12; putative amino-acid acetyltransferase; T20K9.13;
putative serine carboxypeptidase I; T20K9.14; putative flavonol
3-o-glucosyltransferase; T20K9.15; T20K9.16; putative chloroplast
envelope Ca2+-ATPase; T20K9.17; T20K9.18; T20K9.19; T20K9.20.
AC005170 AC005170 107937bp DNA HTG 20-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T29E15'
genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005310 AC005310 79188bp DNA HTG 15-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19D11'
genomic sequence near marker 'CIC06C03'; HTGS phase 1, 3 unordered
pieces.
HTG; HTGS_PHASE1.
AC005311 AC005311 87949bp DNA HTG 14-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16B12'
genomic sequence near marker 'm283'; HTGS phase 1, 5 unordered pieces.
HTG; HTGS_PHASE1.
AC005312 AC005312 90163bp DNA HTG 18-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16F16'
genomic sequence near marker 'CIC11A04'; HTGS phase 1, 6 unordered
pieces.
HTG; HTGS_PHASE1.
AC005313 AC005313 99517bp DNA HTG 18-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T18E12'
genomic sequence near marker 'CIC11A04'; HTGS phase 1, 2 unordered
pieces.
HTG; HTGS_PHASE1.
AC005315 AC005315 108393bp DNA HTG 19-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9I4'
genomic sequence near marker 'mi54'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005395 AC005395 108241bp DNA HTG 18-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17H15'
genomic sequence near marker 'B68'; HTGS phase 1, 3 unordered pieces.
HTG; HTGS_PHASE1.
AC005397 AC005397 112131bp DNA HTG 20-AUG-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3F17'
genomic sequence near marker 'CIC02E07'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005489 AC005489 100896bp DNA HTG 15-AUG-1998
*** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
BAC F14N23; HTGS phase 1, 3 unordered pieces.
HTG; HTGS_PHASE1.
AF081066 AF081066 2169bp DNA PLN 16-AUG-1998
Arabidopsis thaliana IAA-amino acid hydrolase homolog ILL3 (ILL3) gene,
complete cds.
ILL3; IAA-amino acid hydrolase homolog ILL3.
AF082157 AF082157 1737bp mRNA PLN 17-AUG-1998
Arabidopsis thaliana beta-glucosidase (GLUC) mRNA, complete cds.
GLUC; beta-glucosidase.
ATAC002388 AC002388 85534bp DNA PLN 15-AUG-1998
Arabidopsis thaliana chromosome II BAC T13E15 genomic sequence, complete
sequence.
HTG; T13E15.1; T13E15.2; T13E15.3; T13E15.4; T13E15.5; TINY transcription
factor isolog; T13E15.6; T13E15.7; T13E15.8; homeodomain-zipper protein,
ATHB-4; T13E15.9; T13E15.10; cytochrome P450 isolog; T13E15.11;
T13E15.12; T13E15.13; 60S ribosomal protein L30 isolog; T13E15.14;
T13E15.15; EREBP isolog; T13E15.16; serine/threonine protein kinase
isolog; T13E15.17; T13E15.18; triacyglycerol lipase isolog; T13E15.19;
giberellin beta-hydroxylase isolog, 5' partial.
ATAC004680 AC004680 88543bp DNA PLN 15-AUG-1998
Arabidopsis thaliana chromosome II BAC F23F1 genomic sequence, complete
sequence.
HTG; F23F1.1; putative Fe(II) transport protein; F23F1.2; high-affinity
potassium transporter (AtKUP1); F23F1.3; sec13-related protein; F23F1.4;
putative protein kinase; F23F1.5; F23F1.6; putative protein phosphatase
2C; F23F1.7; F23F1.8; F23F1.9; putative ubiqinone reductase; F23F1.10;
omega-3 fatty acid desaturase; F23F1.11; F23F1.12; cyclophilin;
F23F1.13; F23F1.14; putative ABC transporter; F23F1.15; F23F1.16;
F23F1.17.
ATAC004786 AC004786 86686bp DNA PLN 20-AUG-1998
Arabidopsis thaliana chromosome II BAC T20K9 genomic sequence, complete
sequence.
HTG; T20K9.1; homeobox protein, HAT9; T20K9.2;
1-aminocyclopropane-1-carboxylate synthase (ACS4); T20K9.3; T20K9.4;
putative squalene epoxidase; T20K9.5; T20K9.6; putative bZIP protein;
T20K9.7; T20K9.8; putative GTP-binding protein; T20K9.9; T20K9.10;
T20K9.11; T20K9.12; putative amino-acid acetyltransferase; T20K9.13;
putative serine carboxypeptidase I; T20K9.14; putative flavonol
3-o-glucosyltransferase; T20K9.15; T20K9.16; putative chloroplast
envelope Ca2+-ATPase; T20K9.17; T20K9.18; T20K9.19; T20K9.20.
ATAC005168 AC005168 87978bp DNA PLN 18-AUG-1998
Arabidopsis thaliana chromosome II BAC F12C20 genomic sequence, complete
sequence.
HTG; F12C20.1; putative Myb protein; F12C20.2; putative C2H2 zinc finger
protein; F12C20.3; putative ripening-associated protein; F12C20.4;
F12C20.5; putative ABC transporter protein; F12C20.6; F12C20.7;
F12C20.8; putative DNA-binding protein; F12C20.9; F12C20.10; F12C20.11;
F12C20.12; F12C20.13; putative choline kinase; F12C20.14; putative AIG1
protein; F12C20.15; F12C20.16; putative hydroxymethylglutaryl-CoA lyase
precursor; F12C20.17; similar to salt-inducible protein; F12C20.18.
ATDEADBLH Y11154 1573bp mRNA PLN 19-AUG-1998
Arabidopsis thaliana mRNA for DEAD box-like RNA helicase, partial.
DEAD box-like RNA helicase; RH1 gene; RH1.
ATU68561 U68561 1407bp mRNA PLN 15-AUG-1998
Arabidopsis thaliana heat shock transcription factor 21 (AtHSF21) mRNA,
partial cds.
AtHSF21; heat shock transcription factor 21.
=========== Updated Sequence Features/Annotations =============
AF039404 AF039404 921bp mRNA PLN 21-AUG-1998
Arabidopsis thaliana uclacyanin 3 (UCC3) mRNA, complete cds.
uclacyanin; stellacyanin; plantacyanin; early nodulin; phytocyanin;
cupredoxin; blue copper protein; arabinogalactan protein; UCC3;
uclacyanin 3.
ATF21P8 AL022347 85785bp DNA PLN 18-AUG-1998
Arabidopsis thaliana DNA chromosome 4, BAC clone F21P8 (ESSAII project).
F21P8.10; putative protein; F21P8.20; protein kinase - like protein;
F21P8.30; serine/threonine kinase - like protein; F21P8.40; F21P8.50;
F21P8.60; F21P8.70; serine/threonine kinase -like protein; F21P8.80;
F21P8.90; serine /threonine kinase - like protein; F21P8.100; F21P8.110;
F21P8.120; F21P8.130; F21P8.140; F21P8.150; F21P8.160; serine/threonine
kinase; F21P8.170; F21P8.180; F21P8.190; serine/threonine - like
protein; F21P8.200; F21P8.210; F21P8.220; hypothetical protein;
F21P8.230.
ATU68017 U68017 1422bp mRNA PLN 14-AUG-1998
Arabidopsis thaliana heat shock transcription factor 4 (AtHSF4) mRNA,
complete cds.
AtHSF4; heat shock transcription factor 4.
ATU76297 U76297 658bp DNA PLN 21-AUG-1998
Arabidopsis thaliana plantacyanin gene, complete cds.
plantacyanin; stellacyanin; uclacyanin; early nodulin; phytocyanin;
cupredoxin; blue copper protein; CBP.
ATU76300 U76300 915bp mRNA PLN 21-AUG-1998
Arabidopsis thaliana copper protein mRNA, complete cds.
early nodulin; uclacyanin; stellacyanin; plantacyanin; phytocyanin;
cupredoxin; blue copper protein; arabinogalactan protein; copper
protein.
ATU77721 U77721 789bp mRNA PLN 21-AUG-1998
Arabidopsis thaliana putative copper protein II mRNA, complete cds.
early nodulin; uclacyanin; stellacyanin; plantacyanin; phytocyanin;
cupredoxin; blue copper protein; arabinogalactan protein; putative
copper protein II.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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