New Arabidopsis DNA 29-Aug-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Aug 29 10:12:18 EST 1998


====================== New DNA Sequences =======================

AB006082    AB006082     1032bp    mRNA     PLN      27-AUG-1998
    Arabidopsis thaliana mRNA for phosphoribosyl-ATP pyrophosphohydrolase,
     complete cds.
    phosphoribosyl-AMPphosphoribosyl-ATP pyrophosphohydrolase; At-IE.

AB006083    AB006083     3176bp    DNA      PLN      27-AUG-1998
    Arabidopsis thaliana gene for phosphoribosyl-ATP pyrophosphohydrolase,
     complete cds.
    phosphoribosyl-ATP pyrophosphohydrolase.

AB006139    AB006139     1094bp    mRNA     PLN      27-AUG-1998
    Arabidopsis thaliana mRNA for phosphoribosylformimino-5-aminoimidazole
     carboxamide ribotide isomerase, complete cds.
    phosphoribosylformimino-5-aminoimidazole carboxamide ribotide;
     phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.

AB008929    AB008929     2282bp    DNA      PLN      27-AUG-1998
    Arabidopsis thaliana gene for
     N'-5'-phosphoribosyl-formimino-5-aminoimidazole-4-carboxamide
     ribonucleotide isomerase, complete cds.
    N'-5'-phosphoribosyl-formimino-5-aminoimidazole-4-carboxamide;
     N'-5'-phosphoribosyl-formimino-5-aminoimidazole- 4-carboxamide
     ribonucleotide isomerase.

AB016870    AB016870    59648bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K15I22,
     complete sequence.
    HTG.

AB016871    AB016871    79109bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K16L22,
     complete sequence.
    HTG.

AB016872    AB016872    86001bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K21P3,
     complete sequence.
    HTG.

AB016873    AB016873    64827bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K22F20,
     complete sequence.
    HTG.

AB016874    AB016874    81729bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K23L20,
     complete sequence.
    HTG.

AB016875    AB016875    60476bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K9D7, complete
     sequence.
    HTG.

AB016876    AB016876    44499bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MKM21, complete
     sequence.
    HTG.

AB016877    AB016877    74842bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MLF18, complete
     sequence.
    HTG.

AB016878    AB016878    85567bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQP15, complete
     sequence.
    HTG.

AB016879    AB016879    75744bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRB17, complete
     sequence.
    HTG.

AB016880    AB016880    81284bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MTG10, complete
     sequence.
    HTG.

AB016881    AB016881    27263bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXC17, complete
     sequence.
    HTG.

AB016882    AB016882    79995bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MZA15, complete
     sequence.
    HTG.

AB016883    AB016883    45878bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K11G2,
     complete sequence.
    HTG.

AB016884    AB016884    45529bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K16H17,
     complete sequence.
    HTG.

AB016885    AB016885    77758bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19M22,
     complete sequence.
    HTG.

AB016886    AB016886    82503bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MCA23, complete
     sequence.
    HTG.

AB016887    AB016887    15607bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MCI2, complete
     sequence.
    HTG.

AB016888    AB016888    85791bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MDH9, complete
     sequence.
    HTG.

AB016889    AB016889    87630bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDJ14, complete
     sequence.
    HTG.

AB016890    AB016890    75803bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MNC17, complete
     sequence.
    HTG.

AB016891    AB016891    34508bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MSF19, complete
     sequence.
    HTG.

AB016892    AB016892    66237bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXF12, complete
     sequence.
    HTG.

AB016893    AB016893    82390bp    DNA      PLN      22-AUG-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MYH9, complete
     sequence.
    HTG.

AC005508    AC005508    84316bp    DNA      HTG      21-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     T2P11 genomic sequence; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AF034387    AF034387     1315bp    mRNA     PLN      28-AUG-1998
    Arabidopsis thaliana AFT protein (AFT) mRNA, complete cds.
    AFT; AFT protein.

AF035936    AF035936     3168bp    mRNA     PLN      26-AUG-1998
    Arabidopsis thaliana phosphatidylinositol 4-kinase mRNA, partial cds.
    phosphatidylinositol 4-kinase.

AF083890    AF083890     1527bp    mRNA     PLN      23-AUG-1998
    Arabidopsis thaliana 20S proteosome subunit 9 mRNA, complete cds.
    20S proteosome subunit 9.

ATF16G20    AL031326    97006bp    DNA      PLN      21-AUG-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F16G20 (ESSAII project).
    F16G20.10; serine/threonine kinase - like protein (fragment); F16G20.20;
     serine/threonine kinase - like protein; F16G20.30; hypothetical protein;
     F16G20.40; putative protein; F16G20.50; F16G20.60; F16G20.70; F16G20.80;
     F16G20.90; F16G20.100; water channel - like protein; F16G20.110;
     F16G20.120; F16G20.130; F16G20.140; F16G20.150; F16G20.160; beta adaptin
     - like protein; F16G20.170; F16G20.180; F16G20.190; F16G20.200;
     F16G20.210; F16G20.220; cysteine proteinase - like protein; F16G20.230;
     F16G20.240.

ATMTUNCOU   AJ001264     1240bp    mRNA     PLN      24-AUG-1998
    Arabidopsis thaliana mRNA for mitochondrial uncoupling protein.
    mitochondrial uncoupling protein.

==================== Updated DNA Sequences =====================

AC004450    AC004450    93079bp    DNA      HTG      25-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14B2'
     genomic sequence near marker 'CIC10F02'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004561    AC004561   136953bp    DNA      HTG      27-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16P2'
     genomic sequence near marker 'mi54'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC004667    AC004667    98551bp    DNA      HTG      26-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4C15'
     genomic sequence near marker 've016'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC005171    AC005171   144179bp    DNA      HTG      27-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4E14'
     genomic sequence near marker 'mi310'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC005310    AC005310    68415bp    DNA      HTG      26-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19D11'
     genomic sequence near marker 'CIC06C03'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005312    AC005312    90164bp    DNA      HTG      26-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16F16'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 6 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005313    AC005313    91318bp    DNA      HTG      27-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T18E12'
     genomic sequence near marker 'CIC11A04'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005314    AC005314    85042bp    DNA      HTG      27-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T32F12'
     genomic sequence near marker 've016'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC005395    AC005395   109525bp    DNA      HTG      27-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17H15'
     genomic sequence near marker 'B68'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC005398    AC005398    98501bp    DNA      HTG      25-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6B13'
     genomic sequence near marker 'mi398'; HTGS phase 1, 7 unordered pieces.
    HTG; HTGS_PHASE1.

AC005496    AC005496    97735bp    DNA      HTG      27-AUG-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T27A16'
     genomic sequence near marker 'mi54'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC004138  AC004138   104016bp    DNA      PLN      26-AUG-1998
    Arabidopsis thaliana chromosome II BAC T17M13 genomic sequence, complete
     sequence.
    HTG; T17M13.1; T17M13.2; putative basic blue protein; T17M13.3; putative
     sucrose/H+ symporter; T17M13.4; T17M13.5; T17M13.6; T17M13.7; tRNA-Ala;
     T17M13.8; T17M13.9; putative U2 snRNA; T17M13.10; putative glutathione
     S-transferase; T17M13.11; T17M13.12; T17M13.13; T17M13.14; putative
     nucleoside triphosphatase; T17M13.15; T17M13.16; ribonuclease, RNS1;
     T17M13.17; T17M13.18; T17M13.19; T17M13.20; putative disease resistance
     protein; T17M13.21; T17M13.22; T17M13.23; homeotic protein AGL30;
     T17M13.24; T17M13.25; putative reverse transcriptase; T17M13.26;
     putative expansin.

ATAC005315  AC005315   108393bp    DNA      PLN      26-AUG-1998
    Arabidopsis thaliana chromosome II BAC T9I4 genomic sequence, complete
     sequence.
    HTG; T9I4.1; putative protein kinase; T9I4.2; T9I4.3; putative expansin;
     T9I4.4; putative receptor protein kinase; T9I4.5; T9I4.6; putative
     reverse transcriptase; T9I4.7; T9I4.8; T9I4.9; T9I4.10; T9I4.11;
     tRNA-Gly; T9I4.12; T9I4.13; T9I4.14; putative zinc-finger protein;
     T9I4.15; putative ubiquitin; T9I4.16; putative ATPase; T9I4.17; putative
     cytochrome P450; T9I4.18; putative ligand-gated ionic channel; T9I4.19;
     T9I4.20; putative laccase.

ATU73462    U73462     1046bp    mRNA     PLN      21-AUG-1998
    Arabidopsis thaliana carbonic anhydrase (CAH1) mRNA, partial cds.
    CAH1; carbonic anhydrase.

=========== Updated Sequence Features/Annotations  =============

AB006210    AB006210     1994bp    mRNA     PLN      27-AUG-1998
    Arabidopsis thaliana mRNA for glutamine amidotransferase/cyclase,
     complete cds.
    glutamine amidotransferase/cyclase.

ATU76300    U76300      915bp    mRNA     PLN      27-AUG-1998
    Arabidopsis thaliana unknown mRNA.
    early nodulin; uclacyanin; stellacyanin; plantacyanin; phytocyanin;
     cupredoxin; blue copper protein; arabinogalactan protein.

ATU77721    U77721      789bp    mRNA     PLN      27-AUG-1998
    Arabidopsis thaliana unknown mRNA.
    early nodulin; uclacyanin; stellacyanin; plantacyanin; phytocyanin;
     cupredoxin; blue copper protein; arabinogalactan protein.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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