New Arabidopsis DNA 31-Jan-1998

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sun Feb 1 20:11:48 EST 1998


====================== New DNA Sequences =======================

AB006693    AB006693     1068bp    mRNA     PLN      29-JAN-1998
    Arabidopsis thaliana mRNA for spermidine synthase, partial cds.
    spermidine synthase.

AB008267    AB008267    79046bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MMG4, complete
     sequence.
    HTG.

AC004044    AC004044    98527bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana BAC T5J8 from chromosome IV, top arm, complete
     sequence.
    HTG.

AC004077    AC004077    77661bp    DNA      HTG      29-JAN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T31E10'
     genomic sequence near marker 've016'; HTGS phase 1, 11 unordered pieces.
    HTG; HTGS_PHASE1.

AF041253    AF041253     1719bp    DNA      PLN      27-JAN-1998
    Arabidopsis thaliana high mobility group protein a (HMGa) gene, complete
     cds.
    HMGa; high mobility group protein a.

AF042668    AF042668     1691bp    mRNA     PLN      28-JAN-1998
    Arabidopsis thaliana fimbrin 1 mRNA, partial cds.
    fimbrin 1.

AF042669    AF042669     2170bp    mRNA     PLN      28-JAN-1998
    Arabidopsis thaliana fimbrin 2 mRNA, complete cds.
    fimbrin 2.

AF042670    AF042670     4996bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana fimbrin 1 gene, partial cds.
    fimbrin 1.

AF042671    AF042671     4269bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana fimbrin 2 gene, complete cds.
    fimbrin 2.

AF043343    AF043343     2171bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana putative vegetative storage protein (vsp1) gene,
     complete cds.
    vsp1; putative vegetative storage protein.

ATCBG45     X79694     5915bp    DNA      PLN      20-JAN-1998
    A.thaliana ecotype Col bg4 and bg5 genes.
    beta-1,3-glucanase; bg4 gene; bg5 gene; bg4; bg5.

ATUBC6      X71381     1548bp    DNA      PLN      26-JAN-1998
    A.thaliana gene for ubiquitin carrier protein.
    E2 protein; UBC6 gene; ubiquitin carrier protein; UBC6.

==================== Updated DNA Sequences =====================

AC003058    AC003058    99163bp    DNA      HTG      27-JAN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27F23'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC003114    AC003114    59261bp    DNA      PLN      23-JAN-1998
    Sequence of BAC T12M4 from Arabidopsis thaliana chromosome 1, complete
     sequence.
    HTG.

AC003680    AC003680    94382bp    DNA      HTG      26-JAN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17K2'
     genomic sequence near marker 'CIC02E07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003981    AC003981   133839bp    DNA      PLN      26-JAN-1998
    Genomic sequence for Arabidopsis thaliana BAC F22O13, complete sequence.
    HTG.

U79556      U79556     1631bp    mRNA     PLN      24-DEC-1997
    Arabidopsis thaliana IAA25 (IAA25) mRNA, partial cds.
    IAA25.

=========== Updated Sequence Features/Annotations  =============

AB007644    AB007644    73840bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19P17,
     complete sequence.
    HTG.

AB007645    AB007645    72698bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K8K14,
     complete sequence.
    HTG.

AB007646    AB007646    37225bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MGI19, complete
     sequence.
    HTG.

AB007647    AB007647    78369bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MJB21, complete
     sequence.
    HTG.

AB007648    AB007648    76329bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MKD15, complete
     sequence.
    HTG.

AB007649    AB007649    58527bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MLE2, complete
     sequence.
    HTG.

AB007650    AB007650    65465bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUA22, complete
     sequence.
    HTG.

AB007651    AB007651    85421bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MWD9, complete
     sequence.
    HTG.

AB007727    AB007727    79590bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXC9.

AB008264    AB008264    79976bp    DNA      PLN      28-JAN-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBD2, complete
     sequence.
    HTG.

AC002560    AC002560   101158bp    DNA      PLN      26-JAN-1998
    Arabidopsis thaliana BAC F21B7 chromosome 1, complete sequence.
    HTG; F21B7.1; F21B7.2; F21B7.3; F21B7.4; F21B7.5; F21B7.6; F21B7.7;
     F21B7.8; F21B7.9; F21B7.10; tRNA-Phe; F21B7.11; F21B7.12; F21B7.13;
     F21B7.14; F24O1.15; tRNA-Glx; F21B7.16; F21B7.17; F21B7.18; F21B7.19;
     F21B7.20; tRNA-Asx; F21B7.21; F21B7.22; F21B7.23; F21B7.24; F21B7.25;
     F21B7.26; F21B7.27; F21B7.28; F21B7.29; F21B7.30; F21B7.31; F21B7.32;
     F21B7.33.

ATGTRNAS    AJ002062 Y15103     2190bp    mRNA     PLN      22-JAN-1998
    Arabidopsis thaliana mRNA for glycyl-tRNA synthetase.
    glycyl-tRNA synthetase.

ATH2AV      Y12575      714bp    mRNA     PLN      22-JAN-1998
    Arabidopsis thaliana mRNA for histone H2A.F/Z.
    H2Av gene; H2Av; histone H2A.F/Z.

ATH2B       Y12576      684bp    mRNA     PLN      22-JAN-1998
    Arabidopsis thaliana mRNA for histone H2B.
    H2B gene; histone H2B; H2B.

ATHSP90A    Y07613     3413bp    DNA      PLN      20-JAN-1998
    A.thaliana hsp90A gene.
    heat shock protein 90A; hsp90A gene; hsp90A.

ATRNACYTO   X90458     1728bp    mRNA     PLN      20-JAN-1998
    A.thaliana mRNA for cytochrome P450.
    CYP86A1 gene; cytochrome P-450; CYP86; cytochrome p450.

ATRPP40     Y10379     3690bp    DNA      PLN      20-JAN-1998
    A.thaliana gene encoding ribosomal protein P40.
    ribosomal p40 protein.

ATUCEE2B    X72626      643bp    mRNA     PLN      23-JAN-1998
    A.thaliana UbcAT4b mRNA for ubiquitin conjugating enzyme E2.
    ubiquitin conjugating enzyme; ubiquitin conjugating enzyme type E2;
     ubiquitin conjugating enzyme E2.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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