New Arabidopsis DNA 31-Jan-1998
AtDB Project
arabidopsis-seq at genome.Stanford.EDU
Sun Feb 1 20:11:48 EST 1998
====================== New DNA Sequences =======================
AB006693 AB006693 1068bp mRNA PLN 29-JAN-1998
Arabidopsis thaliana mRNA for spermidine synthase, partial cds.
spermidine synthase.
AB008267 AB008267 79046bp DNA PLN 28-JAN-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MMG4, complete
sequence.
HTG.
AC004044 AC004044 98527bp DNA PLN 28-JAN-1998
Arabidopsis thaliana BAC T5J8 from chromosome IV, top arm, complete
sequence.
HTG.
AC004077 AC004077 77661bp DNA HTG 29-JAN-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T31E10'
genomic sequence near marker 've016'; HTGS phase 1, 11 unordered pieces.
HTG; HTGS_PHASE1.
AF041253 AF041253 1719bp DNA PLN 27-JAN-1998
Arabidopsis thaliana high mobility group protein a (HMGa) gene, complete
cds.
HMGa; high mobility group protein a.
AF042668 AF042668 1691bp mRNA PLN 28-JAN-1998
Arabidopsis thaliana fimbrin 1 mRNA, partial cds.
fimbrin 1.
AF042669 AF042669 2170bp mRNA PLN 28-JAN-1998
Arabidopsis thaliana fimbrin 2 mRNA, complete cds.
fimbrin 2.
AF042670 AF042670 4996bp DNA PLN 28-JAN-1998
Arabidopsis thaliana fimbrin 1 gene, partial cds.
fimbrin 1.
AF042671 AF042671 4269bp DNA PLN 28-JAN-1998
Arabidopsis thaliana fimbrin 2 gene, complete cds.
fimbrin 2.
AF043343 AF043343 2171bp DNA PLN 28-JAN-1998
Arabidopsis thaliana putative vegetative storage protein (vsp1) gene,
complete cds.
vsp1; putative vegetative storage protein.
ATCBG45 X79694 5915bp DNA PLN 20-JAN-1998
A.thaliana ecotype Col bg4 and bg5 genes.
beta-1,3-glucanase; bg4 gene; bg5 gene; bg4; bg5.
ATUBC6 X71381 1548bp DNA PLN 26-JAN-1998
A.thaliana gene for ubiquitin carrier protein.
E2 protein; UBC6 gene; ubiquitin carrier protein; UBC6.
==================== Updated DNA Sequences =====================
AC003058 AC003058 99163bp DNA HTG 27-JAN-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27F23'
genomic sequence near marker 'CIC06E08'; HTGS phase 1, 2 unordered
pieces.
HTG; HTGS_PHASE1.
AC003114 AC003114 59261bp DNA PLN 23-JAN-1998
Sequence of BAC T12M4 from Arabidopsis thaliana chromosome 1, complete
sequence.
HTG.
AC003680 AC003680 94382bp DNA HTG 26-JAN-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17K2'
genomic sequence near marker 'CIC02E07'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC003981 AC003981 133839bp DNA PLN 26-JAN-1998
Genomic sequence for Arabidopsis thaliana BAC F22O13, complete sequence.
HTG.
U79556 U79556 1631bp mRNA PLN 24-DEC-1997
Arabidopsis thaliana IAA25 (IAA25) mRNA, partial cds.
IAA25.
=========== Updated Sequence Features/Annotations =============
AB007644 AB007644 73840bp DNA PLN 28-JAN-1998
Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19P17,
complete sequence.
HTG.
AB007645 AB007645 72698bp DNA PLN 28-JAN-1998
Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K8K14,
complete sequence.
HTG.
AB007646 AB007646 37225bp DNA PLN 28-JAN-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MGI19, complete
sequence.
HTG.
AB007647 AB007647 78369bp DNA PLN 28-JAN-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MJB21, complete
sequence.
HTG.
AB007648 AB007648 76329bp DNA PLN 28-JAN-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MKD15, complete
sequence.
HTG.
AB007649 AB007649 58527bp DNA PLN 28-JAN-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MLE2, complete
sequence.
HTG.
AB007650 AB007650 65465bp DNA PLN 28-JAN-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUA22, complete
sequence.
HTG.
AB007651 AB007651 85421bp DNA PLN 28-JAN-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MWD9, complete
sequence.
HTG.
AB007727 AB007727 79590bp DNA PLN 28-JAN-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXC9.
AB008264 AB008264 79976bp DNA PLN 28-JAN-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MBD2, complete
sequence.
HTG.
AC002560 AC002560 101158bp DNA PLN 26-JAN-1998
Arabidopsis thaliana BAC F21B7 chromosome 1, complete sequence.
HTG; F21B7.1; F21B7.2; F21B7.3; F21B7.4; F21B7.5; F21B7.6; F21B7.7;
F21B7.8; F21B7.9; F21B7.10; tRNA-Phe; F21B7.11; F21B7.12; F21B7.13;
F21B7.14; F24O1.15; tRNA-Glx; F21B7.16; F21B7.17; F21B7.18; F21B7.19;
F21B7.20; tRNA-Asx; F21B7.21; F21B7.22; F21B7.23; F21B7.24; F21B7.25;
F21B7.26; F21B7.27; F21B7.28; F21B7.29; F21B7.30; F21B7.31; F21B7.32;
F21B7.33.
ATGTRNAS AJ002062 Y15103 2190bp mRNA PLN 22-JAN-1998
Arabidopsis thaliana mRNA for glycyl-tRNA synthetase.
glycyl-tRNA synthetase.
ATH2AV Y12575 714bp mRNA PLN 22-JAN-1998
Arabidopsis thaliana mRNA for histone H2A.F/Z.
H2Av gene; H2Av; histone H2A.F/Z.
ATH2B Y12576 684bp mRNA PLN 22-JAN-1998
Arabidopsis thaliana mRNA for histone H2B.
H2B gene; histone H2B; H2B.
ATHSP90A Y07613 3413bp DNA PLN 20-JAN-1998
A.thaliana hsp90A gene.
heat shock protein 90A; hsp90A gene; hsp90A.
ATRNACYTO X90458 1728bp mRNA PLN 20-JAN-1998
A.thaliana mRNA for cytochrome P450.
CYP86A1 gene; cytochrome P-450; CYP86; cytochrome p450.
ATRPP40 Y10379 3690bp DNA PLN 20-JAN-1998
A.thaliana gene encoding ribosomal protein P40.
ribosomal p40 protein.
ATUCEE2B X72626 643bp mRNA PLN 23-JAN-1998
A.thaliana UbcAT4b mRNA for ubiquitin conjugating enzyme E2.
ubiquitin conjugating enzyme; ubiquitin conjugating enzyme type E2;
ubiquitin conjugating enzyme E2.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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