New Arabidopsis DNA 21-Feb-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sun Feb 22 22:43:32 EST 1998


====================== New DNA Sequences =======================

AC004138    AC004138    84174bp    DNA      HTG      13-FEB-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17M13'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 15 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004146    AC004146    82899bp    DNA      HTG      14-FEB-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC F5A8
     genomic sequence; HTGS phase 1, 16 unordered pieces.
    HTG; HTGS_PHASE1.

AF033204    AF033204     4065bp    DNA      PLN      19-FEB-1998
    Arabidopsis thaliana putative pectin methylesterase (PME3) gene, complete
     cds.
    PME3; putative pectin methylesterase.

AF033205    AF033205      236bp    DNA      PLN      19-FEB-1998
    Arabidopsis thaliana clone AtPMEpcrA putative pectin methylesterase gene,
     partial cds.
    putative pectin methylesterase.

AF033206    AF033206      236bp    DNA      PLN      19-FEB-1998
    Arabidopsis thaliana clone AtPMEpcrB putative pectin methylesterase gene,
     partial cds.
    putative pectin methylesterase.

AF033207    AF033207      221bp    DNA      PLN      19-FEB-1998
    Arabidopsis thaliana clone AtPMEpcrC putative pectin methylesterase gene,
     partial cds.
    putative pectin methylesterase.

ATT6K21     AL021889    98822bp    DNA      PLN      16-FEB-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSAII project).
    T6K21.10; predicted protein; T6K21.20; hypothetical protein; T6K21.30;
     T6K21.40; putative protein; T6K21.50; T6K21.60; bHLH protein - like;
     T6K21.70; T6K21.80; T6K21.90; T6K21.100; T6K21.110; T6K21.120;
     T6K21.130; T6K21.140; T6K21.150; T6K21.160; NAM (no apical meristem) -
     like protein; T6K21.170; T6K21.180; T6K21.190; T6K21.200; T6K21.210.

ATT8O5      AL021890    83029bp    DNA      PLN      16-FEB-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone T8O5 (ESSAII project).
    T8O5.10; putative protein; T8O5.20; T8O5.30; T8O5.40; T8O5.50; T8O5.60;
     T8O5.70; T8O5.80; heat shock protein - like; T8O5.90; T8O5.100;
     hypothetical protein; T8O5.110; T8O5.120; T8O5.130; T8O5.140; T8O5.150;
     calcium-dependent protein kinase - like protein; T8O5.160; T8O5.170;
     peroxidase prxr1; T8O5.180.

ATTRANSKE   Y14333     2235bp    mRNA     PLN      16-FEB-1998
    Arabidopsis thaliana mRNA for transketolase.
    transketolase.

==================== Updated DNA Sequences =====================

AC003979    AC003979    90773bp    DNA      HTG      15-FEB-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     T22J18 sequence; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC004135    AC004135    72814bp    DNA      HTG      16-FEB-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T17H7; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC002340  AC002340    79574bp    DNA      PLN      13-FEB-1998
    Arabidopsis thaliana chromosome II BAC T11J7 genomic sequence, complete
     sequence.
    HTG; T11J7.1; Histone H1-2C, 5' partial; T11J7.2; T11J7.3; maize
     transposon MuDR mudrA-like protein; T11J7.4; putative
     3-hydroxyisobutyryl-coenzyme A hydrolase; T11J7.5; T11J7.6; putative
     tropinone reductase; T11J7.7; T11J7.8; T11J7.9; T11J7.10; T11J7.11;
     T11J7.12; putative protein kinase; T11J7.13; T11J7.14; putative
     cytochrome P450; T11J7.15; T11J7.16; T11J7.17; T11J7.18; putative
     photosystem II oxygen-evolving complex 23K protein; T11J7.19; putative
     RNA helicase A, 5' partial.

=========== Updated Sequence Features/Annotations  =============

AT23KB      Y11187    23918bp    DNA      PLN      16-FEB-1998
    A.thaliana RH1, TC1, G14587-5, G14587-6, and PRL1 genes.
    PRL1 gene; RH1 gene; TC1 gene; RH1; RH1 protein; TC1; Terpene cyclase,
     TC1; G14587-5; G14587-6; PRL1; PRL1 protein.

ATAC002339  AC002339    91071bp    DNA      PLN      14-FEB-1998
    Arabidopsis thaliana chromosome II BAC T11A7 genomic sequence, complete
     sequence.
    HTG; T11A7.1; putative receptor-like protein kinase; T11A7.2; putative
     GMP kinase; T11A7.3; putative DNA binding protein; T11A7.4; putative
     calcium-dependent protein kinase; T11A7.5; putative polygalacturonase;
     T11A7.6; putative 40S ribosomal protein S2; T11A7.7; T11A7.8; T11A7.9;
     T11A7.10; T11A7.11; putative isulinase; T11A7.12; T11A7.13; T11A7.14;
     T11A7.15; T11A7.16; putative villin; T11A7.17; T11A7.18; salt inducible
     protein-like; T11A7.19; putative AP2 domain-containing protein;
     T11A7.20; putative ABC transporter, 3' partial.

ATASKDZET   X94938     1636bp    mRNA     PLN      13-FEB-1998
    A.thaliana mRNA for shaggy-like kinase dzeta.
    ASK dzeta gene; serine/threonine kinase; shaggy-like kinase dzeta; ASK
     dzeta.

ATASKIOTA   X99696     1614bp    mRNA     PLN      13-FEB-1998
    A.thaliana mRNa for shaggy-like kinase iota.
    AKS iota gene; shaggy-like kinase iota; ASK iota; shaggy-like protein
     kinase iota.

ATASKRNA    X94939     1738bp    mRNA     PLN      13-FEB-1998
    A.thaliana mRNA for shaggy-like kinase etha.
    ASK etha gene; shaggy-like kinase etha; ASK etha.

ATMS2LIPR   X99923     1710bp    mRNA     PLN      18-FEB-1998
    A.thaliana mRNA for male sterility 2-like protein.
    male sterility 2; male sterility 2-like protein.

ATTERSYNT   Y11188     1797bp    mRNA     PLN      16-FEB-1998
    A.thaliana mRNA for putative terpene synthase.
    terpene synthase; TS1 gene; TS1; Terpene synthase, TS1.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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