New Arabidopsis DNA 28-Feb-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Feb 28 14:22:10 EST 1998


====================== New DNA Sequences =======================

AC004165    AC004165    84431bp    DNA      HTG      24-FEB-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T27E13'
     genomic sequence near marker 'm283'; HTGS phase 1, 10 unordered pieces.
    HTG; HTGS_PHASE1.

AC004218    AC004218    99958bp    DNA      HTG      24-FEB-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12L6'
     genomic sequence near marker 'CIC10A06'; HTGS phase 1, 5 unordered
     pieces.
    HTG; HTGS_PHASE1.

AF020288    AF020288     5233bp    mRNA     PLN      25-FEB-1998
    Arabidopsis thaliana MgATP-energized glutathione S-conjugate pump (MRP2)
     mRNA, complete cds.
    MRP2; MgATP-energized glutathione S-conjugate pump.

AF020289    AF020289     9650bp    DNA      PLN      25-FEB-1998
    Arabidopsis thaliana MgATP-energized glutathione S-conjugate pump (MRP2)
     gene, complete cds.
    MRP2; MgATP-energized glutathione S-conjugate pump.

ATF28A23    AL021961    94090bp    DNA      PLN      23-FEB-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F28A23 (ESSAII project).
    F28A23.10; cinnamyl alcohol dehydrogenase - like protein; F28A23.20;
     receptor protein kinase - like protein; F28A23.30; kinetochore (SKP1p) -
     like protein; F28A23.40; Phosphoglycerate dehydrogenase - like protein;
     F28A23.50; putative protein; F28A23.60; F28A23.70; F28A23.80; cyclin
     delta-3; F28A23.90; F28A23.100; hypothetical protein; F28A23.110;
     glucosyltransferase -like protein; F28A23.120; F28A23.130;
     poly(A)-binding protein; F28A23.140; F28A23.150; F28A23.160; F28A23.170;
     F28A23.180; F28A23.190; caffeoyl-CoA O-methyltransferase - like protein;
     F28A23.200; F28A23.210; F28A23.220; F28A23.230; F28A23.240; bZIP
     transcription factor - like protein (fragment).

ATF7J7      AL021960    91390bp    DNA      PLN      23-FEB-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F7J7 (ESSAII project).
    F7J7.10; putative protein; F7J7.20; F7J7.30; adrenodoxin - like protein;
     F7J7.40; UV-damaged DNA-binding protein- like; F7J7.50; G10 - like
     protein; F7J7.60; amino acid transport protein AAT1; F7J7.70;
     hypothetical protein; F7J7.80; F7J7.90; F7J7.100; F7J7.110; F7J7.120;
     F7J7.130; F7J7.140; gibberellin 20-oxidase - like protein; F7J7.150;
     F7J7.160; F7J7.170; receptor kinase - like protein; F7J7.180; F7J7.190;
     F7J7.200; F7J7.210; kinesin-related protein katA; F7J7.220; photosystem
     II oxygen-evolving complex protein 3 - like; F7J7.230.

ATU66424    U66424     2328bp    mRNA     PLN      24-FEB-1998
    Arabidopsis thaliana fimbrin-like protein mRNA, complete cds.
    fimbrin-like protein.

==================== Updated DNA Sequences =====================

AC003058    AC003058   100202bp    DNA      HTG      26-FEB-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27F23'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004005    AC004005   113230bp    DNA      HTG      20-FEB-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F6E13'
     genomic sequence near marker 'CIC10F02, CIC02E07'; HTGS phase 1, 3
     unordered pieces.
    HTG; HTGS_PHASE1.

AC004077    AC004077    85141bp    DNA      HTG      23-FEB-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T31E10'
     genomic sequence near marker 've016'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC004138    AC004138    98162bp    DNA      HTG      26-FEB-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17M13'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 6 unordered
     pieces.
    HTG; HTGS_PHASE1.

=========== Updated Sequence Features/Annotations  =============

AC003673    AC003673   101783bp    DNA      HTG      26-FEB-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19F24'
     genomic sequence near marker 'CIC06E08'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AF016282    AF016282     1945bp    DNA      PLN      24-FEB-1998
    Arabidopsis thaliana 5'-adenylylsulfate reductase (APR1) gene, complete
     cds.
    APR1; 5'-adenylylsulfate reductase.

AF016283    AF016283     2621bp    DNA      PLN      24-FEB-1998
    Arabidopsis thaliana 5'-adenylylsulfate reductase (APR2) gene, complete
     cds.
    APR2; 5'-adenylylsulfate reductase.

AF016284    AF016284     2945bp    DNA      PLN      24-FEB-1998
    Arabidopsis thaliana 5'-adenylylsulfate reductase (APR3) gene, complete
     cds.
    APR3; 5'-adenylylsulfate reductase.

ATRADAIE    AJ001100     4844bp    DNA      PLN      20-FEB-1998
    Arabidopsis thaliana RAD51 gene, and Aie insertion element.
    insertion element; RAD51 gene; Rad51-like protein; rad51.

ATU47324    U47324      944bp    DNA      PLN      24-FEB-1998
    Arabidopsis thaliana isopentenyl diphosphate:dimethylallyl diphosphate
     isomerase (IPP1) gene, complete cds.
    IPP1; isopentenyl diphosphate:dimethylallyl diphosphate isomerase.

ATU49259    U49259     1053bp    mRNA     PLN      24-FEB-1998
    Arabidopsis thaliana isopentenyl diphosphate:dimethylallyl diphosphate
     isomerase (IPP2) mRNA, complete cds.
    IPP2; isopentenyl diphosphate:dimethylallyl diphosphate isomerase.

ATU77673    U77673     1512bp    mRNA     PLN      23-FEB-1998
    Arabidopsis thaliana fimbrin-like protein AtFim2 mRNA, partial cds.
    fimbrin-like protein AtFim2.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






More information about the Arab-gen mailing list