New Arabidopsis DNA 03-Jan-1998

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sun Jan 4 13:54:35 EST 1998


====================== New DNA Sequences =======================

AC003970    AC003970    88109bp    DNA      HTG      31-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     F14J9 genomic sequence; HTGS phase 1, 13 unordered pieces.
    HTG; HTGS_PHASE1.

AF016282    AF016282     1945bp    DNA      PLN      02-JAN-1998
    Arabidopsis thaliana 5'-adenylylsulfate reductase (APR1) gene, complete
     cds.
    APR1; 5'-adenylylsulfate reductase.

AF016283    AF016283     2621bp    DNA      PLN      02-JAN-1998
    Arabidopsis thaliana 5'-adenylylsulfate reductase (APR2) gene, complete
     cds.
    APR2; 5'-adenylylsulfate reductase.

AF016284    AF016284     2945bp    DNA      PLN      02-JAN-1998
    Arabidopsis thaliana 5'-adenylylsulfate reductase (APR3) gene, complete
     cds.
    APR3; 5'-adenylylsulfate reductase.

AF016644    AF016644     3232bp    DNA      PLN      01-JAN-1998
    Arabidopsis thaliana PAP-specific phosphatase (Ahl) gene, complete cds.
    Ahl; PAP-specific phosphatase.

AF021804    AF021804      714bp    mRNA     PLN      01-JAN-1998
    Arabidopsis thaliana fatty acid hydroxylase Fah1p (FAH1) mRNA, complete
     cds.
    FAH1; fatty acid hydroxylase Fah1p.

AF022082    AF022082     1799bp    mRNA     PLN      01-JAN-1998
    Arabidopsis thaliana sulfolipid biosynthesis protein (SQD1) mRNA,
     complete cds.
    SQD1; sulfolipid biosynthesis protein.

AF024623    AF024623     1691bp    mRNA     PLN      01-JAN-1998
    Arabidopsis thaliana galactose kinase (GAL1) mRNA, complete cds.
    GAL1; galactose kinase.

AF030864    AF030864     3164bp    mRNA     PLN      30-DEC-1997
    Arabidopsis thaliana nonphototropic hypocotyl 1 (NPH1) mRNA, partial cds.
    NPH1.

ATU65470    U65470     1456bp    DNA      PLN      02-JAN-1998
    Arabidopsis thaliana retrotransposon TSCL genomic sequence.

ATU65471    U65471     1214bp    mRNA     PLN      02-JAN-1998
    Arabidopsis thaliana retrotransposon TSCL mRNA sequence.

ATU77673    U77673     1512bp    mRNA     PLN      02-JAN-1998
    Arabidopsis thaliana fimbrin-like protein AtFim2 mRNA, partial cds.
    fimbrin-like protein AtFim2.

ATU87266    U87266     2486bp    mRNA     PLN      02-JAN-1998
    Arabidopsis thaliana 2,3-oxidosqualene-triterpenoid cyclase mRNA,
     complete cds.
    2,3-oxidosqualene-triterpenoid cyclase.

ATU97200    U97200     2595bp    mRNA     PLN      02-JAN-1998
    Arabidopsis thaliana cobalamin-independent methionine synthase (ATCIMS)
     mRNA, complete cds.
    ATCIMS; cobalamin-independent methionine synthase.

ATU97684    U97684     1180bp    mRNA     PLN      02-JAN-1998
    Arabidopsis thaliana peroxidase precursor (RCI3A) mRNA, complete cds.
    RCI3A; peroxidase precursor; peroxidase.

ATY15990    Y15990     5086bp    DNA      PLN      28-DEC-1997
    Arabidopsis thaliana pgp3 gene.
    pgp3 gene; pgp3; P-glycoprotein-like protein.

==================== Updated DNA Sequences =====================

AC003027    AC003027   117729bp    DNA      HTG      31-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     F21M11 genomic sequence; HTGS phase 2, 2 ordered pieces.
    HTG; HTGS_PHASE2.

AC003040    AC003040   128208bp    DNA      HTG      31-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F26B6'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC003673    AC003673   101783bp    DNA      HTG      30-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19F24'
     genomic sequence near marker 'CIC06E08'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003680    AC003680    94417bp    DNA      HTG      31-DEC-1997
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17K2'
     genomic sequence near marker 'CIC02E07'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

=========== Updated Sequence Features/Annotations  =============

ATHUPM1R    L47479     1448bp    mRNA     PLN      29-DEC-1997
    Arabidopsis thaliana urophorphyrin III methylase (UPM1) mRNA, complete
     cds.
    UPM1; urophorphyrin III methylase.

ATU63734    U63734     2050bp    DNA      PLN      29-DEC-1997
    Arabidopsis thaliana s-adenosyl-L-methionine-dependent uroporphyrinogen
     III methyltransferase (UPM1) gene, complete cds.
    UPM1; s-adenosyl-L-methionine-dependent uroporphyrinogen III
     methyltransferase.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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