New Arabidopsis DNA 17-Jan-1998

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Sun Jan 18 19:14:20 EST 1998


====================== New DNA Sequences =======================

AB000093    AB000093     4249bp    DNA      PLN      13-JAN-1998
    Arabidopsis thaliana gene for inorganic phosphate transporter, complete
     cds.
    inorganic phosphate transporter; PHT5.

AB000094    AB000094    15532bp    DNA      PLN      13-JAN-1998
    Arabidopsis thaliana gene for inorganic phosphate transporter, protein
     phosphatase 1 catalytic subunit, complete cds.
    inorganic phosphate; protein phosphatase 1 catalytic subunit; PHT3;
     inorganic phosphate transporter; PHT2.

AF016274    AF016274      861bp    DNA      PLN      16-JAN-1998
    Arabidopsis thaliana minisatellite-like locus CMs4.

AF016275    AF016275     1127bp    DNA      PLN      16-JAN-1998
    Arabidopsis thaliana minisatellite-like locus CMs6.

AF016276    AF016276      196bp    DNA      PLN      16-JAN-1998
    Arabidopsis thaliana minisatellite-like locus CMs9.

AF016277    AF016277       60bp    DNA      PLN      16-JAN-1998
    Arabidopsis thaliana minisatellite-like locus CMs10.

AF030357    AF030357      933bp    mRNA     PLN      16-JAN-1998
    Arabidopsis thaliana C-8,7 sterol isomerase mRNA, complete cds.
    C-8,7 sterol isomerase.

AF039364    AF039364     2531bp    mRNA     PLN      13-JAN-1998
    Arabidopsis thaliana ecotype Kl-0 chromomethylase (CMT1) mRNA, complete
     cds.
    CMT1; chromomethylase.

AF039365    AF039365     2232bp    mRNA     PLN      13-JAN-1998
    Arabidopsis arenosa isolate Care-1(9509) chromomethylase (CMT1) mRNA,
     partial cds.
    CMT1; chromomethylase.

ART222713   AJ222713     2427bp    DNA      PLN      13-JAN-1998
    Arabidopsis thaliana nap gene.
    NAC-like protein; nap gene; nap.

AT12OXOPR   Y10617     1311bp    RNA      PLN      08-JAN-1998
    A.thaliana mRNA for 12-oxo-phytodienoate reductase.
    12-oxo-phytodienoate reductase; FS-AT-I; 12-oxophytodienoate reductase.

AT55BF      Y10557     1253bp    RNA      PLN      08-JAN-1998
    Arabidopsis thaliana g5bf mRNA.
    g5bf gene; g5bf.

ATAJ2490    AJ002490      925bp    DNA      PLN      08-JAN-1998
    Arabidopsis thaliana plastid ndhB gene, exon 1 and joined CDS.
    ndhB gene; ndhB.

ATAJ2491    AJ002491     1413bp    DNA      PLN      08-JAN-1998
    Arabidopsis thaliana plastid ndhB gene, exon 2.
    ndhB gene; ndhB.

ATAJ2524    AJ002524     2220bp    DNA      PLN      08-JAN-1998
    Arabidopsis thaliana gene encoding ornithine carbamoyltransferase.
    ornithine carbamoyltransferase.

ATAJ2585    AJ002585     2133bp    DNA      PLN      08-JAN-1998
    Arabidopsis thaliana Thionin gene.
    Thi2,1 gene; thionin; Thi2,1.

ATCTPP      Y10477     1023bp    mRNA     PLN      09-JAN-1998
    A.thaliana mRNA for chloroplast thylakoidal processing peptidase.
    chloroplast thylakoidal processing peptidase.

ATGASA4     X98255     2399bp    DNA      PLN      08-JAN-1998
    A.thaliana GASA4 gene.
    GASA4 gene; GASA4.

ATINVINHH   Y12807      669bp    RNA      PLN      08-JAN-1998
    Arabidopsis thaliana mRNA for invertase inhibitor homolog.
    invertase inhibitor; invertase inhibitor homolog.

ATMLOH1     Z95352     1880bp    RNA      PLN      08-JAN-1998
    A.thaliana AtMlo-h1 gene.
    Mlo gene; AtMlo-h1.

ATNAP16KD   Z96936      546bp    RNA      PLN      08-JAN-1998
    Arabidopsis thaliana mRNA for nitrilase associated protein NAP16kDa.
    NAP16kDa; nitrilase associated protein; NAP16kDa protein.

ATORNCARB   AJ000476     1327bp    RNA      PLN      08-JAN-1998
    Arabidopsis thaliana mRNA for ornithine carbamoyltransferase, complete
     CDS.
    ornithine carbamoyltransferase; otc gene; OTC; Ornithine
     carbamoyltransferase.

ATSAL2MRN   Z83312     1227bp    RNA      PLN      08-JAN-1998
    A.thaliana mRNA for 3'(2'),5'-bisphosphate nucleotidase.
    3'(2'),5'-bisphosphate nucleotidase; SAL2 gene; SAL2.

ATU76423    U76423     3471bp    DNA      PLN      14-JAN-1998
    Arabidopsis thaliana phosphoinositol-specific phospholipse C delta
     (ATHATPLC1G) gene, complete cds.
    ATHATPLC1G; phosphoinositol-specific phospholipase C delta.

ATY15066    Y15066     1691bp    DNA      PLN      08-JAN-1998
    Arabidopsis thaliana mRNA for ethylene-regulated transcript 2.
    ets 2 gene; transcription factor; ERT2; hypothetical protein.

D78596      D78596     1711bp    mRNA     PLN      15-JAN-1998
    Arabidopsis thaliana mRNA for trans-cinnamate 4-hydroxylase, complete
     cds.
    CYP73A5; trans-cinnamate 4-hydroxylase.

D78597      D78597     1202bp    DNA      PLN      15-JAN-1998
    Arabidopsis thaliana DNA for trans-ciinamate 4-hydroxylase, partial cds.
    cytochrome P450 monooxygenase, CYP73 gene family; trans-ciinamate
     4-hydroxylase.

==================== Updated DNA Sequences =====================

AC003096    AC003096    78222bp    DNA      HTG      12-JAN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T29F13'
     genomic sequence near marker 've016'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC003672    AC003672   110540bp    DNA      HTG      09-JAN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16B22'
     genomic sequence near marker 'm336'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC003674    AC003674    41270bp    DNA      HTG      15-JAN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17A14'
     genomic sequence near marker 'CIC10A06'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC003680    AC003680    94382bp    DNA      HTG      12-JAN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17K2'
     genomic sequence near marker 'CIC02E07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003974    AC003974    96075bp    DNA      HTG      12-JAN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F24L7'
     genomic sequence near marker 'TEn5'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC003981    AC003981   133977bp    DNA      HTG      14-JAN-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F22O13; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC003105  AC003105    95167bp    DNA      PLN      09-JAN-1998
    Arabidopsis thaliana chromosome II BAC F18A8 genomic sequence, complete
     sequence.
    HTG; F18A8.1; putative beta-ketoacyl-CoA synthase; F18A8.2; potassium
     transporter, AKT1; F18A8.3; similar to barley ids-4 gene product;
     F18A8.4; F18A8.5; F18A8.6; putative nitrate transporter; F18A8.7;
     putative Ser/Thr protein kinase; F18A8.8; putative cytochrome P450;
     F18A8.9; putative blue copper protein precursor; F18A8.10; putative
     receptor kinase; F18A8.11; soluble epoxide hydrolase; F18A8.12; putative
     soluble epoxide hydrolase; F18A8.13; putative cyclin; F18A8.14;
     F18A8.15.

=========== Updated Sequence Features/Annotations  =============

AF028842    AF028842     1477bp    mRNA     PLN      16-JAN-1998
    Arabidopsis thaliana DegP protease mRNA, nuclear gene encoding
     chloroplast protein, complete cds.
    DegP; DegP protease precursor; DegP protease.

AT40KDAPR   X89366     2049bp    DNA      PLN      08-JAN-1998
    A.thaliana DNA for 40 kDa protein gene.
    40KD protein; p40 gene; p40; 40kD protein.

ATAF002109  AF002109   108847bp    DNA      PLN      09-JAN-1998
    Arabidopsis thaliana chromosome II BAC T28M21 genomic sequence, complete
     sequence.
    HTG; T28M21.1; 5' partial cucumisin serine protease isolog; T28M21.2;
     tRNA-Asp; T28M21.3; T28M21.4; Myb isolog; T28M21.5; proline transporter
     1; T28M21.6; transcription factor SF3 isolog; T28M21.7; T28M21.8;
     T28M21.9; Su1p isolog; T28M21.10; T28M21.11; T28M21.12; T28M21.13;
     peroxisomal ATP/ADP carrier protein isolog; T28M21.14;
     hypersensitivity-related gene 201 isolog; T28M21.15; 26S proteasome
     regulatory subunit S12 isolog; T28M21.16; Hs1pro-1 related protein
     isolog; T28M21.17; 60S acidic ribosomal protein P0 isolog; T28M21.18;
     T28M21.19; DNA-directed RNA polymerase II isolog; T28M21.20; T28M21.21;
     T28M21.22; T28M21.23; T28M21.24; T28M21.25; ABC1 isolog.

ATCHIV      Y14590     2381bp    DNA      PLN      08-JAN-1998
    Arabidopsis thaliana CHIV gene.
    chitinase; chiV gene; class IV; CHIV; class IV chitinase.

ATLRH       X69056     1073bp    RNA      PLN      08-JAN-1998
    A.thaliana mRNA for laminin receptor homologue.
    homologue; laminin receptor; laminin receptor homologue.

ATU78721    U78721   114144bp    DNA      PLN      09-JAN-1998
    Arabidopsis thaliana chromosome II BAC T01B08 genomic sequence, complete
     sequence.
    HTG; T01B08.26; Barley Mlo protein isolog, 5' partial; T01B08.1;
     T01B08.27; T01B08.2; protein phosphatase 2C isolog; T01B08.3;
     cadmium-induced protein isolog; T01B08.29; T01B08.4; RNA helicase
     isolog; T01B08.5; CutA isolog; T01B08.6; T01B08.7; T01B08.8;
     Ubiquitin-conjugating enzyme, E2-16kD isolog; T01B08.28; T01B08.9;
     proline-rich protein isolog; T01B08.10; 30S ribosomal protein S5 isolog;
     T01B08.11; Squamosa-promoter binding protein 1 isolog; T01B08.12;
     mitochondrial carrier protein isolog; T01B08.13; auxin-repressed protein
     isolog; T01B08.14; tyrosyl-tRNA synthetase isolog; T01B08.15; T01B08.30;
     T01B08.16; GTP binding protein isolog; T01B08.31; Serine proteinase
     (stubble) isolog; T01B08.17; tRNA-Pro; T01B08.18; T01B08.19; T01B08.20;
     T01B08.21; T01B08.22; T01B08.23; T01B08.24; T01B08.25; T01B08.32.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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