New Arabidopsis DNA 24-Jan-1998

AtDB Project arabidopsis-seq at genome.Stanford.EDU
Mon Jan 26 11:50:46 EST 1998


====================== New DNA Sequences =======================

AB003687    AB003687     1887bp    mRNA     PLN      22-JAN-1998
    Arabidopsis thaliana mRNA for 6-4 photolyase, complete cds.
    UVR3; 6-4 photolyase.

AB010407    AB010407     7087bp    DNA      PLN      21-JAN-1998
    Arabidopsis thaliana DNA for phosphoglycerate dehydrogenase, complete
     cds.
    phosphoglycerate dehydrogenase.

AB010408    AB010408     6124bp    DNA      PLN      21-JAN-1998
    Arabidopsis thaliana DNA for phosphoserine aminotransferase, complete
     cds.
    phosphoserine aminotransferase.

AC004005    AC004005   131597bp    DNA      HTG      16-JAN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F6E13'
     genomic sequence near marker 'CIC10F02, CIC02E07'; HTGS phase 1, 24
     unordered pieces.
    HTG; HTGS_PHASE1.

AF028338    AF028338     1691bp    DNA      PLN      22-JAN-1998
    Arabidopsis thaliana ubiquitin-conjugating enzyme 15 (UBC15) gene,
     complete cds.
    UBC15; ubiquitin-conjugating enzyme 15.

AF028339    AF028339     1330bp    DNA      PLN      22-JAN-1998
    Arabidopsis thaliana ubiquitin-conjugating enzyme 16 (UBC16) gene,
     complete cds.
    UBC16; ubiquitin-conjugating enzyme 16.

AF028340    AF028340      619bp    mRNA     PLN      22-JAN-1998
    Arabidopsis thaliana ubiquitin-conjugating enzyme 17 (UBC17) mRNA,
     complete cds.
    UBC17; ubiquitin-conjugating enzyme 17.

AF028341    AF028341      356bp    mRNA     PLN      22-JAN-1998
    Arabidopsis thaliana ubiquitin-conjugating enzyme 18 (UBC18) mRNA,
     partial cds.
    UBC18; ubiquitin-conjugating enzyme 18.

AF039895    AF039895     4205bp    mRNA     PLN      20-JAN-1998
    Arabidopsis thaliana putative aldehyde oxidase (AO1) mRNA, complete cds.
    AO1; putative aldehyde oxidase.

AF039896    AF039896     1886bp    mRNA     PLN      20-JAN-1998
    Arabidopsis thaliana putative aldehyde oxidase (AO3) mRNA, partial cds.
    AO3; putative aldehyde oxidase.

AF039897    AF039897      880bp    mRNA     PLN      20-JAN-1998
    Arabidopsis thaliana putative aldehyde oxidase (AO2) mRNA, partial cds.
    AO2; putative aldehyde oxidase.

AF039998    AF039998      272bp    DNA      PLN      19-JAN-1998
    Arabidopsis arenosa internal transcribed spacer 1, complete sequence.
    internal transcribed spacer 1 ITS1.

AF040041    AF040041      184bp    DNA      PLN      19-JAN-1998
    Arabidopsis arenosa internal transcribed spacer 2, complete sequence.
    internal transcribed spacer 2 ITS2.

AF040102    AF040102     2924bp    mRNA     PLN      18-JAN-1998
    Arabidopsis thaliana p105 mRNA, complete cds.
    p105.

AF042334    AF042334     1141bp    mRNA     PLN      19-JAN-1998
    Arabidopsis thaliana JAB1 (JAB1) mRNA, complete cds.
    JAB1.

ATAJ0057    AJ000057     1525bp    mRNA     PLN      16-JAN-1998
    Arabidopsis thaliana mRNA for a serine/threonine protein phosphatase.
    serine/threonine protein phosphatase; PP7.

ATDNARPL4   Y14566     2100bp    DNA      PLN      17-JAN-1998
    Arabidopsis thaliana rpL4 gene.
    ribosomal protein L4; rpL4 gene; rpL4.

ATRNARPL4   Y14565     1184bp    mRNA     PLN      17-JAN-1998
    Arabidopsis thaliana mRNA for ribosomal protein L4.
    ribosomal protein L4; rpL4 gene; rpL4.

ATU70424    U70424     1366bp    mRNA     PLN      17-JAN-1998
    Arabidopsis thaliana O-methyltransferase 1 (OMT1) mRNA, complete cds.
    OMT1; O-methyltransferase 1.

==================== Updated DNA Sequences =====================

AC002392    AC002392   110075bp    DNA      HTG      20-JAN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20K24'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

ATAC003674  AC003674    39141bp    DNA      PLN      20-JAN-1998
    Arabidopsis thaliana chromosome II BAC F17A14 genomic sequence, complete
     sequence.
    HTG; F17A14.1; putative beta-1,3-endoglucanase; F17A14.2; F17A14.3;
     putative protein kinase; F17A14.4; F17A14.5; F17A14.6; F17A14.7;
     putative expansin; F17A14.8.

AC003974    AC003974    94999bp    DNA      HTG      20-JAN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F24L7'
     genomic sequence near marker 'TEn5'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003981    AC003981   133999bp    DNA      HTG      22-JAN-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F22O13; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AF017991    AF017991      933bp    mRNA     PLN      22-JAN-1998
    Arabidopsis thaliana salt stress inducible small GTP binding protein Ran1
     homolog mRNA, complete cds.
    salt stress inducible small GTP binding protein Ran1 homolog.

ATAC003674  AC003674    39141bp    DNA      PLN      20-JAN-1998
    Arabidopsis thaliana chromosome II BAC F17A14 genomic sequence, complete
     sequence.
    HTG; F17A14.1; putative beta-1,3-endoglucanase; F17A14.2; F17A14.3;
     putative protein kinase; F17A14.4; F17A14.5; F17A14.6; F17A14.7;
     putative expansin; F17A14.8.

=========== Updated Sequence Features/Annotations  =============

AC003113    AC003113    86373bp    DNA      PLN      16-JAN-1998
    Arabidopsis thaliana BAC F24O1 chromosome 1, complete sequence.
    HTG; F24O1.1; F24O1.2; F24O1.3; F24O1.4; F24O1.5; F24O1.6; F24O1.7;
     F24O1.8; F24O1.9; F24O1.10; F24O1.11; F24O1.12; F24O1.13; F24O1.14;
     F25O1.15; F24O1.16; F24O1.17; F24O1.18; F24O1.19; F24O1.20.

AF000977    AF000977     1348bp    mRNA     PLN      21-JAN-1998
    Arabidopsis thaliana MEK1 mRNA, complete cds.
    MEK1.

AF002220    AF002220     7179bp    DNA      PLN      17-JAN-1998
    Arabidopsis thaliana kinesin-like calmodulin-binding protein gene,
     complete cds.
    kinesin-like calmodulin-binding protein.

AF027157    AF027157     1341bp    DNA      PLN      21-JAN-1998
    Arabidopsis thaliana auxin-responsive protein IAA2 gene, complete cds.
    IAA2; auxin-responsive protein IAA2.

ATCYC07     AJ001342      906bp    mRNA     PLN      16-JAN-1998
    Arabidopsis thaliana mRNA for S-phase-specific ribosomal protein.
    cyc07; ribosomal protein; S-phase-specific protein; Putative
     S-phase-specific ribosomal protein.

ATHMTMACP   L23574      562bp    mRNA     PLN      16-JAN-1998
    Arabidopsis thaliana acyl carrier protein precursor, mRNA, complete cds.
    acyl carrier protein precursor; acyl carrier protein.

ATRABGDI2   AJ001397     1684bp    mRNA     PLN      16-JAN-1998
    Arabidopsis thaliana mRNA for rab GDP dissociation inhibitor, isoform 2.
    GDI2 gene; GDP dissociation inhibitor; rab-GDI gene; GDI2.

ATU40399    U40399      761bp    mRNA     PLN      16-JAN-1998
    Arabidopsis thaliana cytosolic cyclophilin (ROC3) mRNA, complete cds.
    ROC3; cytosolic cyclophilin.

ATU40400    U40400     1135bp    DNA      PLN      16-JAN-1998
    Arabidopsis thaliana cytosolic cyclophilin (ROC2) gene, complete cds.
    ROC2; cytosolic cyclophilin.

ATU42724    U42724     3414bp    DNA      PLN      16-JAN-1998
    Arabidopsis thaliana cyclophilin (ROC4) gene, nuclear gene encoding
     chloroplast protein, complete cds.
    ROC4; cyclophilin.

ATU65638    U65638     2283bp    mRNA     PLN      21-JAN-1998
    Arabidopsis thaliana vacuolar type ATPase subunit A mRNA, complete cds.
    vacuolar type ATPase subunit A.

ATU92084    U92084      762bp    mRNA     PLN      17-JAN-1998
    Arabidopsis thaliana clathrin assembly protein AP19 mRNA, complete cds.
    clathrin assembly protein AP19.

ATU92085    U92085     3964bp    DNA      PLN      17-JAN-1998
    Arabidopsis thaliana clathrin assembly protein AP19 homolog (AAP19-1)
     gene, complete cds.
    AAP19-1; clathrin assembly protein AP19 homolog.

ATU92086    U92086     2833bp    DNA      PLN      17-JAN-1998
    Arabidopsis thaliana clathrin assembly protein AP19 homolog (AAP19-2)
     gene, complete cds.
    AAP19-2; clathrin assembly protein AP19 homolog.

ATU95758    U95758     8160bp    DNA      PLN      16-JAN-1998
    Arabidopsis thaliana lysine-ketoglutarate reductase/saccharopine
     dehydrogenase bifunctional enzyme gene, complete cds.
    lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional
     enzyme.

ATU95759    U95759     3373bp    mRNA     PLN      16-JAN-1998
    Arabidopsis thaliana lysine-ketoglutarate reductase/saccharopine
     dehydrogenase bifunctional enzyme mRNA, complete cds.
    lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional
     enzyme.

ATUDGE      Z54214     1356bp    mRNA     PLN      16-JAN-1998
    A.thaliana mRNA for uridine diphosphate glucose epimerase.
    uridine diphosphate glucose epimerase.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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