New Arabidopsis DNA 06-Jul-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon Jul 6 14:00:57 EST 1998


====================== New DNA Sequences =======================

AB010915    AB010915     1227bp    mRNA     PLN      29-JUN-1998
    Arabidopsis thaliana mRNA for responce regulator1, complete cds.
    responce regulator1.

AB010916    AB010916      980bp    mRNA     PLN      29-JUN-1998
    Arabidopsis thaliana mRNA for responce reactor2, complete cds.
    responce reactor2.

AB010917    AB010917     1346bp    mRNA     PLN      29-JUN-1998
    Arabidopsis thaliana mRNA for responce reactor3, complete cds.
    responce reactor3.

AB010918    AB010918     1087bp    mRNA     PLN      29-JUN-1998
    Arabidopsis thaliana mRNA for responce reactor4, complete cds.
    responce reactor4.

AC005223    AC005223    85603bp    DNA      HTG      01-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     T5A14 genomic sequence; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AF036684    AF036684      826bp    DNA      PLN      02-JUL-1998
    Arabidopsis thaliana CCAAT-box binding factor HAP3 homolog gene, complete
     cds.
    CCAAT-box binding factor HAP3 homolog.

AF040959    AF040959     1500bp    DNA      PLN      02-JUL-1998
    Arabidopsis thaliana AP2 domain family transcription factor homolog
     (ABI4) gene, complete cds.
    ABI4; AP2 domain family transcription factor homolog.

AF051562    AF051562     2401bp    mRNA     PLN      02-JUL-1998
    Arabidopsis thaliana transposon Tag1 putative transposase mRNA, complete
     cds.
    putative transposase.

AF054617    AF054617      427bp    mRNA     PLN      02-JUL-1998
    Arabidopsis thaliana one helix protein (OHP) mRNA, complete cds.
    OHP; one helix protein.

AF057357    AF057357     1961bp    DNA      PLN      01-JUL-1998
    Arabidopsis thaliana lipid transfer protein 2 precursor (LTP2) gene,
     complete cds.
    LTP2; lipid transfer protein 2 precursor; lipid transfer protein 2.

AF061518    AF061518      877bp    mRNA     PLN      01-JUL-1998
    Arabidopsis thaliana manganese superoxide dismutase (MSD1) mRNA, complete
     cds.
    MSD1; manganese superoxide dismutase.

AF061519    AF061519      850bp    mRNA     PLN      01-JUL-1998
    Arabidopsis thaliana copper/zinc superoxide dismutase (CSD2) mRNA,
     nuclear gene encoding plastid protein, complete cds.
    CSD2; copper/zinc superoxide dismutase.

AF061520    AF061520      674bp    mRNA     PLN      01-JUL-1998
    Arabidopsis thaliana copper/zinc superoxide dismutase (CSD3) mRNA,
     partial cds.
    CSD3; copper/zinc superoxide dismutase.

AF061852    AF061852      786bp    mRNA     PLN      01-JUL-1998
    Arabidopsis thaliana iron superoxide dismutase 3 (FSD3) mRNA, partial
     cds.
    FSD3; iron superoxide dismutase 3.

AF069495    AF069495     1370bp    mRNA     PLN      02-JUL-1998
    Arabidopsis thaliana cytochrome P450 (CYP79B2) mRNA, partial cds.
    CYP79B2; cytochrome P450.

AF071788    AF071788     3231bp    mRNA     PLN      29-JUN-1998
    Arabidopsis thaliana phosphoenolpyruvate carboxylase (PPC) mRNA, complete
     cds.
    PPC; phosphoenolpyruvate carboxylase.

AF072536    AF072536     2497bp    mRNA     PLN      28-JUN-1998
    Arabidopsis thaliana H-protein promoter binding factor-1 (HPPBF-1) mRNA,
     complete cds.
    HPPBF-1; H-protein promoter binding factor-1.

AF072897    AF072897    83078bp    DNA      PLN      28-JUN-1998
    Arabidopsis thaliana BAC T8A17 chromosome IV, complete sequence.
    HTG.

ATAJ6404    AJ006404     2526bp    mRNA     PLN      29-JUN-1998
    Arabidopsis thaliana mRNA for LATE ELONGATED HYPOCOTYL MYB transcription
     factor.
    transcription factor; late elongated hypocotyl.

ATF28M20    AL031004    90902bp    DNA      PLN      29-JUN-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F28M20 (ESSAII project).
    F28M20.10; putative protein; F28M20.20; methyltransferase - like protein;
     F28M20.30; monogalactosyldiacylglycerol synthase - like protein;
     F28M20.40; RNA lariat debranching enzyme - like protein; F28M20.50;
     peroxidase - like protein; F28M20.60; F28M20.70; F28M20.80; hypothetical
     protein; F28M20.90; Transcription factor II homolog; F28M20.100;
     F28M20.110; ribosomal protein S6 - like; F28M20.120; F28M20.130;
     F28M20.140; F28M20.150; F28M20.160; F28M20.170; F28M20.180; F28M20.190;
     F28M20.200; F28M20.210; F28M20.220; RSZp22 splicing factor; F28M20.230.

ATH7450     AJ007450     1649bp    mRNA     PLN      30-JUN-1998
    Arabidopsis thaliana mRNA for auxilin-like protein.
    auxilin protein; auxilin-like protein.

ATM4I22     AL030978    83371bp    DNA      PLN      27-JUN-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone M4I22 (ESSAII project).
    M4I22.10; putative protein; M4I22.20; M4I22.30; M4I22.40; histone H2A-
     like protein; M4I22.50; hypothetical protein; M4I22.60; M4I22.70; GH3
     like protein; M4I22.80; M4I22.90; M4I22.100; putative receptor like
     kinase; M4I22.110; putative receptor protein kinase; M4I22.120;
     M4I22.130; M4I22.140; M4I22.150; M4I22.160; M4I22.170; M4I22.180; myosin
     heavy chain - like protein; M4I22.190; M4I22.200; M4I22.210.

ATY15433    Y15433     1520bp    DNA      PLN      30-JUN-1998
    Arabidopsis thaliana psbO gene.
    oxygen-evolving complex; photosystem II; psbO gene; psbO; 33 kDa
     polypeptide of oxygen-evolving complex (OEC) in photosystem II.

==================== Updated DNA Sequences =====================

AC004392    AC004392   115641bp    DNA      PLN      01-JUL-1998
    Arabidopsis thaliana chromosome 1 BAC F8K4 sequence, complete sequence.
    HTG.

AC004809    AC004809    93751bp    DNA      HTG      30-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     F13M7; HTGS phase 2, 2 ordered pieces.
    HTG; HTGS_PHASE2.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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