New Arabidopsis DNA 11-Jul-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Jul 11 11:03:32 EST 1998


====================== New DNA Sequences =======================

AB013301    AB013301     1034bp    mRNA     PLN      09-JUL-1998
    Arabidopsis thaliana AtERF6 mRNA for ethylene responsive element binding
     factor, complete cds.
    ethylene responsive element binding factor; AtERF6.

AB015748    AB015748     1871bp    DNA      PLN      03-JUL-1998
    Arabidopsis thaliana gene for cyanase, complete cds.
    cyanase; AtCYN.

AF039206    AF039206 U62147     5876bp    DNA      PLN      08-JUL-1998
    Arabidopsis thaliana cystathionine gamma-synthase precursor (CGS1) gene,
     nuclear gene encoding chloroplast protein, complete cds.
    CGS1; cystathionine gamma-synthase precursor.

AF063852    AF063852     1051bp    mRNA     PLN      05-JUL-1998
    Arabidopsis thaliana FUS5 (FUS5) mRNA, complete cds.
    FUS5.

AF063901    AF063901     1452bp    mRNA     PLN      05-JUL-1998
    Arabidopsis thaliana alanine:glyoxylate aminotransferase (AGT) mRNA,
     complete cds.
    AGT; alanine:glyoxylate aminotransferase.

ATF17I5     AL031032    86748bp    DNA      PLN      07-JUL-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F17I5 (ESSAII project).
    F17I5.10; F17I5.20; putative protein; F17I5.30; F17I5.40; F17I5.50;
     F17I5.60; putative peroxidase; F17I5.70; F17I5.80; hypothetical protein;
     F17I5.90; F17I5.100; F17I5.110; F17I5.120; F17I5.130; F17I5.140; protein
     kinase - like protein; F17I5.150; F17I5.160; extensin-like protein;
     F17I5.170; F17I5.180; F17I5.190; bZIP transcription factor - like
     protein; F17I5.200; F17I5.210; F17I5.220; putative protein (fragment).

ATF7H19     AL031018   139316bp    DNA      PLN      03-JUL-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSAII project).
    F7H19.10; putative protein; F7H19.20; F7H19.30; F7H19.40; hypothetical
     protein; F7H19.50; anthocyanidin synthase - like protein; F7H19.60;
     putative leucoanthocyanidin dioxygenase (LDOX); F7H19.70; F7H19.80;
     F7H19.90; putative fizzy-related protein; F7H19.100; F7H19.110;
     dihydroorotase; F7H19.120; putative cdc2 kinase homolog; F7H19.130;
     putative MADS Box / AGL protein; F7H19.140; F7H19.150; F7H19.160;
     F7H19.170; F7H19.180; F7H19.190; F7H19.200; F7H19.210; F7H19.220;
     F7H19.230; F7H19.240; putative serine/threonine kinase; F7H19.250;
     F7H19.260; putative membrane protein; F7H19.270; F7H19.280; F7H19.290;
     gamma-glutamylcysteine synthetase; F7H19.300; F7H19.310; F7H19.320;
     protein kinase - like protein; F7H19.330; serine/threonine kinase - like
     protein.

ATH7582     AJ007582     1393bp    mRNA     PLN      03-JUL-1998
    Arabidopsis thaliana mRNA for arginine methyltransferase.
    arginine methyltransferase.

T15F16      AF076275    97494bp    DNA      PLN      08-JUL-1998
    Arabidopsis thaliana BAC T15F16.

T24H24      AF075598    88848bp    DNA      PLN      08-JUL-1998
    Arabidopsis thaliana BAC T24H24.

T2H3        AF075597    48689bp    DNA      PLN      10-JUL-1998
    Arabidopsis thaliana BAC T2H3.

TM027D20    AF076274    80446bp    DNA      PLN      08-JUL-1998
    Arabidopsis thaliana BAC TM027D20.

==================== Updated DNA Sequences =====================

AC005106    AC005106    84180bp    DNA      HTG      07-JUL-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T25N20; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC004681  AC004681    78732bp    DNA      PLN      09-JUL-1998
    Arabidopsis thaliana chromosome II BAC T26B15 genomic sequence, complete
     sequence.
    HTG; T26B15.1; putative O-GlcNAc transferase, 5' partial; T26B15.2;
     Myb-related protein; T26B15.3; T26B15.4; T26B15.5; T26B15.6; T26B15.7;
     NPK1-related protein kinase; T26B15.8; T26B15.9; putative cellulose
     synthase; T26B15.10; T26B15.11; T26B15.12; T26B15.13; T26B15.14;
     T26B15.15; putative condensin protein; T26B15.16; putative spliceosomal
     protein; T26B15.17; T26B15.18; T26B15.19; putative salt-inducible
     protein; T26B15.20; T26B15.21; T26B15.22; putative disease resistance
     protein; T26B15.23; putative homeobox protein, 3' partial.

=========== Updated Sequence Features/Annotations  =============

AB008111    AB008111     3080bp    mRNA     PLN      04-JUL-1998
    Arabidopsis thaliana Atrboh F mRNA, complete cds.
    Atrboh F.

ATAAAA      Y12780     2190bp    mRNA     PLN      06-JUL-1998
    A.thaliana mRNA for ATPase, partial.
    AAA gene; ATPase; AAA.

ATH6030     AJ006030     4645bp    DNA      PLN      02-JUL-1998
    Arabidopsis thaliana ascorbate peroxidase III (apxIII) gene.
    apxIII gene; ascorbate peroxidase III gene; apxIII; ascorbate peroxidase.

ATH7450     AJ007450     1649bp    mRNA     PLN      07-JUL-1998
    Arabidopsis thaliana mRNA for auxilin-like protein.
    auxilin protein; auxilin-like protein.

ATHSF3      Y14068     1791bp    mRNA     PLN      03-JUL-1998
    Arabidopsis thaliana mRNA for heat shock factor 3.
    heat shock factor 3; HSF3 gene; HSF3; Heat Shock Factor 3.

ATHSF4      Y14069     1144bp    mRNA     PLN      03-JUL-1998
    Arabidopsis thaliana mRNA for heat shock factor 4.
    heat shock factor 4; HSF4 gene; HSF4; Heat Shock Factor 4.

ATHSP176A   Y14070      632bp    mRNA     PLN      03-JUL-1998
    Arabidopsis thaliana mRNA for heat shock protein 17.6A.
    heat shock protein 17.6A; hsp17.6A gene; HSP17.6A; Heat Shock Protein
     17.6A.

ATY13691    Y13691      976bp    mRNA     PLN      03-JUL-1998
    Arabidopsis thaliana mRNA for proteasome subunit prc1.
    alpha subunit; endopeptidase; prc1 gene; proteosome; prc1; multicatalytic
     endopeptidase complex, proteasome component, alpha subunit.

ATY13692    Y13692      753bp    mRNA     PLN      03-JUL-1998
    Arabidopsis thaliana mRNA for proteasome subunit prgb.
    beta subunit; endopeptidase; prcgb gene; proteosome; prcgb;
     multicatalytic endopeptidase complex, proteasome component, beta
     subunit.

ATY13693    Y13693      958bp    mRNA     PLN      03-JUL-1998
    Arabidopsis thaliana mRNA for proteasome subunit prc8.
    alpha subunit; endopeptidase; prc8 gene; proteosome; prc8; multicatalytic
     endopeptidase complex, proteasome component, alpha subunit.

ATY13694    Y13694      946bp    mRNA     PLN      03-JUL-1998
    Arabidopsis thaliana mRNA for proteasome subunit prcd.
    beta subunit; endopeptidase; prcd gene; proteosome precursor; prcd;
     multicatalytic endopeptidase complex, proteasome precursor, beta
     subunit.

ATY13695    Y13695     1031bp    mRNA     PLN      03-JUL-1998
    Arabidopsis thaliana mRNA for proteasome subunit prce.
    beta subunit; endopeptidase; prce gene; proteosome precursor; prce;
     multicatalytic endopeptidase complex, proteasome precursor, beta
     subunit.

ATY13696    Y13696      600bp    mRNA     PLN      03-JUL-1998
    Arabidopsis thaliana mRNA for proteasome subunit prch.
    beta subunit; endopeptidase; prch gene; proteosome; prch; multicatalytic
     endopeptidase complex, proteasome component, beta subunit.

ATY16327    Y16327     2547bp    mRNA     PLN      07-JUL-1998
    Arabidopsis thaliana mRNA for putative cyclic nucleotide-regulated ion
     channel, cngc1.
    cngc1 gene; cyclic nucleotide-regulated ion channel; cngc1; putative
     cyclic nucleotide-regulated ion channel.

ATY16328    Y16328     2398bp    DNA      PLN      07-JUL-1998
    Arabidopsis thaliana mRNA for putative cyclic nucleotide-regulated ion
     channel, cngc2.
    cngc2 gene; cyclic nucleotide-regulated ion channel; cngc2; putative
     cyclic nucleotide-regulated ion channel.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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