New Arabidopsis DNA 18-Jul-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Jul 18 13:12:38 EST 1998


====================== New DNA Sequences =======================

AB016066    AB016066     1021bp    mRNA     PLN      14-JUL-1998
    Arabidopsis thaliana mRNA for mitochondrial phosphate transporter,
     partial cds.
    mitochondrial phosphate transporter.

AC005275    AC005275   136335bp    DNA      PLN      10-JUL-1998
    Arabidopsis thaliana BAC F4C21 from chromosome IV, top arm, near 17 cM,
     complete sequence.
    HTG.

AC005278    AC005278    95712bp    DNA      HTG      11-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     F15K9; HTGS phase 1, 8 unordered pieces.
    HTG; HTGS_PHASE1.

AC005287    AC005287   136215bp    DNA      HTG      15-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     F20D21 genomic sequence; HTGS phase 1, 13 unordered pieces.
    HTG; HTGS_PHASE1.

AF053228    AF053228     3900bp    DNA      PLN      15-JUL-1998
    Arabidopsis thaliana G-box binding factor 2 (GBF2) gene, complete cds.
    GBF2; G-box binding factor 2.

AF053366    AF053366     1431bp    mRNA     PLN      15-JUL-1998
    Arabidopsis thaliana photolyase/blue light photoreceptor PHR2 (PHR2)
     mRNA, complete cds.
    PHR2; photolyase/blue light photoreceptor PHR2.

AF057281    AF057281     1298bp    mRNA     PLN      17-JUL-1998
    Arabidopsis thaliana two-component response regulator homolog (IBC6)
     mRNA, complete cds.
    IBC6; two-component response regulator homolog.

AF057282    AF057282     1056bp    mRNA     PLN      17-JUL-1998
    Arabidopsis thaliana two-component response regulator homolog (IBC7)
     mRNA, complete cds.
    IBC7; two-component response regulator homolog.

AF060553    AF060553     2298bp    DNA      PLN      14-JUL-1998
    Arabidopsis thaliana calcium sensor homolog (SOS3) gene, complete cds.
    SOS3; calcium sensor homolog.

AF074021    AF074021   103632bp    DNA      PLN      13-JUL-1998
    Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence.
    HTG.

AF074916    AF074916     6733bp    DNA      PLN      14-JUL-1998
    Arabidopsis thaliana NBS/LRR disease resistance protein (RFL1) and
     resistance to Pseudomonas syringae protein 5 (RPS5) genes, complete cds.
    RFL1; NBS/LRR disease resistance protein; RPS5; resistance to Pseudomonas
     syringae protein 5.

AF076243    AF076243    99384bp    DNA      PLN      13-JUL-1998
    Arabidopsis thaliana BAC T26N6, chromosome IV, 19.3 cM, complete
     sequence.
    HTG.

AF076251    AF076251      986bp    mRNA     PLN      12-JUL-1998
    Arabidopsis thaliana calcineurin B-like protein 1 (CBL1) mRNA, complete
     cds.
    CBL1; calcineurin B-like protein 1.

AF076252    AF076252     1043bp    mRNA     PLN      12-JUL-1998
    Arabidopsis thaliana calcineurin B-like protein 2 (CBL2) mRNA, complete
     cds.
    CBL2; calcineurin B-like protein 2.

AF076253    AF076253     1063bp    mRNA     PLN      12-JUL-1998
    Arabidopsis thaliana calcineurin B-like protein 3 (CBL3) mRNA, complete
     cds.
    CBL3; calcineurin B-like protein 3.

ATAJ5130    AJ005130     1418bp    DNA      PLN      13-JUL-1998
    Arabidopsis thaliana Sbe2.2 gene, 5' region.
    Sbe2.2 gene; Sbe2.2.

ATH224306   AJ224306     8815bp    DNA      PLN      13-JUL-1998
    Arabidopsis thaliana PRT1 gene.
    prt1 gene; PRT1.

ATH224307   AJ224307     1514bp    mRNA     PLN      13-JUL-1998
    Arabidopsis thaliana mRNA for PRT1 protein.
    prt1 gene; PRT1.

ATH7791     AJ007791     3521bp    mRNA     PLN      13-JUL-1998
    Arabidopsis thaliana mRNA for mismatch repair protein (Msh3).
    DNA mismatch repair protein; MSH3 gene; msh3; Msh3 protein.

ATMGDGSYN   AJ000331     1647bp    mRNA     PLN      08-JUL-1998
    Arabidopsis thaliana mRNA for monogalactosyldiacylglycerol synthase.
    mgd gene; monogalactosyldiacylglycerol synthase; mgd.

F9D12       AF077407   112253bp    DNA      PLN      15-JUL-1998
    Arabidopsis thaliana BAC F9D12.
    F9D12.12; F9D12.13; F9D12.14; F9D12.11; F9D12.10; F9D12.9; F9D12.8;
     F9D12.7; F9D12.15; F9D12.6; F9D12.5; F9D12.4; F9D12.3; F9D12.16;
     F9D12.17; F9D12.2; F9D12.18; F9D12.19; F9D12.1.

T24M8       AF077409    68251bp    DNA      PLN      15-JUL-1998
    Arabidopsis thaliana BAC T24M8.
    024M08.2; 024M08.3; 024M08.4; 024M08.5; 024M08.7; 024M08.6; 024M08.8;
     024M08.9; 024M08.10.

T7M24       AF077408    74475bp    DNA      PLN      15-JUL-1998
    Arabidopsis thaliana BAC T7M24.
    T7M24.7; T7M24.5; T7M24.4; T7M24.3; T7M24.1.

=========== Updated Sequence Features/Annotations  =============

AF053746    AF053746      745bp    mRNA     PLN      15-JUL-1998
    Arabidopsis thaliana dormancy-associated protein (DRM1) mRNA, complete
     cds.
    DRM1; dormancy-associated protein.

AF053747    AF053747     4390bp    DNA      PLN      15-JUL-1998
    Arabidopsis thaliana dormancy-associated protein (DRM1) gene, complete
     cds.
    DRM1; dormancy-associated protein.

ATAJ6404    AJ006404     2526bp    mRNA     PLN      14-JUL-1998
    Arabidopsis thaliana mRNA for LATE ELONGATED HYPOCOTYL MYB transcription
     factor.
    transcription factor; late elongated hypocotyl.

ATHSF3      Y14068     1791bp    mRNA     PLN      09-JUL-1998
    Arabidopsis thaliana mRNA for heat shock factor 3.
    heat shock factor 3; HSF3 gene; HSF3; Heat Shock Factor 3.

ATHSF4      Y14069     1144bp    mRNA     PLN      09-JUL-1998
    Arabidopsis thaliana mRNA for heat shock factor 4.
    heat shock factor 4; HSF4 gene; HSF4; Heat Shock Factor 4.

ATU73175    U73175     1499bp    mRNA     PLN      10-JUL-1998
    Arabidopsis thaliana carbamoyl phosphate synthetase small subunit mRNA
     (carA), complete cds.
    carA; carbamoyl phosphate synthetase small subunit.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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