New Arabidopsis DNA 25-Jul-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Jul 25 13:53:55 EST 1998


====================== New DNA Sequences =======================

AB012912    AB012912     3553bp    mRNA     PLN      18-JUL-1998
    Arabidopsis thaliana CIP7 mRNA for COP1-Interacting Protein 7, complete
     cds.
    COP1-Interacting Protein 7 (CIP7); CIP7.

AB012913    AB012913     1278bp    DNA      PLN      18-JUL-1998
    Arabidopsis thaliana gene for COP1-Interacting ProteinI 7 (CIP7), partial
     cds.
    CIP7; COP1-Interacting ProteinI 7 (CIP7).

AC005292    AC005292    79116bp    DNA      HTG      18-JUL-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F26F24; HTGS phase 1, 12 unordered pieces.
    HTG; HTGS_PHASE1.

AC005309    AC005309   149725bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17A22'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 19 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005310    AC005310    79123bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19D11'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005311    AC005311    76604bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16B12'
     genomic sequence near marker 'm283'; HTGS phase 1, 9 unordered pieces.
    HTG; HTGS_PHASE1.

AC005312    AC005312    89090bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16F16'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 12 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005313    AC005313   101406bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T18E12'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 6 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005314    AC005314    83567bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T32F12'
     genomic sequence near marker 've016'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC005315    AC005315   112361bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9I4'
     genomic sequence near marker 'mi54'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AF025842    AF025842     3339bp    mRNA     PLN      22-JUL-1998
    Arabidopsis thaliana plasma membrane-type calcium ATPase (ACA2) mRNA,
     complete cds.
    ACA2; plasma membrane-type calcium ATPase.

AF031244    AF031244     1717bp    mRNA     PLN      21-JUL-1998
    Arabidopsis thaliana nodulin-like protein mRNA, partial cds.
    nodulin-like protein.

AF053941    AF053941     2896bp    mRNA     PLN      23-JUL-1998
    Arabidopsis thaliana nonphototropic hypocotyl 2 (NPH2) mRNA, complete
     cds.
    NPH2; nonphototropic hypocotyl 2.

AF067857    AF067857     1963bp    DNA      PLN      22-JUL-1998
    Arabidopsis thaliana embryo-specific protein 1 (ATS1) gene, complete cds.
    ATS1; embryo-specific protein 1.

AF067858    AF067858     1260bp    DNA      PLN      22-JUL-1998
    Arabidopsis thaliana embryo-specific protein 3 (ATS3) gene, complete cds.
    ATS3; embryo-specific protein 3.

AF072691    AF072691     1266bp    mRNA     PLN      19-JUL-1998
    Arabidopsis thaliana putative basic helix-loop-helix DNA binding protein
     TCP2 (tcp3) mRNA, partial cds.
    tcp3; putative basic helix-loop-helix DNA binding protein TCP2.

ATAC003028  AC003028   115359bp    DNA      PLN      22-JUL-1998
    Arabidopsis thaliana chromosome II BAC F16M14 genomic sequence, complete
     sequence.
    HTG; F16M14.1; putative diphenol oxidase; F16M14.2; Myb-related
     transcription activator; F16M14.3; putative peptide transporter;
     F16M14.4; F16M14.5; F16M14.6; putative acyltransferase; F16M14.7;
     putative ribosomal protein S31; F16M14.8; F16M14.9; F16M14.10; high
     affinity calcium antiporter; F16M14.11; F16M14.12; F16M14.13; F16M14.14;
     putative ethylene-inducible protein; F16M14.15; F16M14.16; F16M14.17;
     putative SRG1 protein; F16M14.18; putative GTL1 protein; F16M14.19;
     F16M14.20; glutaredoxin-like protein; F16M14.21; putative amidase;
     F16M14.22; putative ammonium transporter; F16M14.23; putative
     cytoskeletal protein.

==================== Updated DNA Sequences =====================

AC004138    AC004138   104044bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17M13'
     genomic sequence near marker 'CIC11A04'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004218    AC004218   102312bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12L6'
     genomic sequence near marker 'CIC10A06'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004261    AC004261    91539bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3K9'
     genomic sequence near marker 'CIC11C08'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004411    AC004411   108692bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14M4'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004665    AC004665   109652bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F4I18'
     genomic sequence near marker 'CIC02E07'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004667    AC004667    94157bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4C15'
     genomic sequence near marker 've016'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC004680    AC004680    88543bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F23F1'
     genomic sequence near marker 'm283'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004683    AC004683    81467bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T19C21'
     genomic sequence near marker 've018'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004697    AC004697   113950bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16B24'
     genomic sequence near marker 'CIC10A06'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004747    AC004747    94101bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T19L18'
     genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC004786    AC004786    93995bp    DNA      HTG      21-JUL-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20K9'
     genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC004077  AC004077    93060bp    DNA      PLN      18-JUL-1998
    Arabidopsis thaliana chromosome II BAC T31E10 genomic sequence, complete
     sequence.
    HTG; T31E10.30; multidrug resistance-associated protein, 3' partial;
     T31E10.1; putative protein serine/threonine kinase; T31E10.2; T31E10.3;
     T31E10.4; T31E10.5; T31E10.6; T31E10.7; putative pyruvate dehydrogenase
     complex E1 beta subunit; T31E10.8; T31E10.9; T31E10.10; putative end13
     protein; T31E10.11; putative GA4 protein; T31E10.12; T31E10.13;
     T31E10.14; mitochondrial ribosomal protein S14; T31E10.15; T31E10.16;
     putative cytochrome P450 protein; T31E10.17; putative cytochrome p450
     protein; T31E10.18; putative ribosomal protein L18A; T31E10.19; putative
     urease accessory protein; T31E10.20; T31E10.21; putative HMG protein;
     T31E10.22; MADS Box protein AGL29; T31E10.23; putative photosystem II
     type I chlorophyll a/b binding protein.; T31E10.24; photosystem II type
     I chlorophyll a/b binding protein; T31E10.25; T31E10.26; T31E10.27;
     nodulin-26-like protein; T31E10.28; T31E10.29; putative selenium-binding
     protein.

ATAC004483  AC004483    85463bp    DNA      PLN      17-JUL-1998
    Arabidopsis thaliana chromosome II BAC T12J2 genomic sequence, complete
     sequence.
    HTG; T12J2.1; putative DNA replication licensing factor, mcm5; T12J2.2;
     T12J2.3; T12J2.4; Athila retroelement ORF1-like protein; T12J2.5;
     reverse-transcriptase-like protein; T12J2.6; T12J2.7; putative RNA
     helicase; T12J2.8; T12J2.9; T12J2.10.

=========== Updated Sequence Features/Annotations  =============

AF016282    AF016282     1945bp    DNA      PLN      21-JUL-1998
    Arabidopsis thaliana 5'-adenylylsulfate reductase (APR1) gene, complete
     cds.
    APR1; 5'-adenylylsulfate reductase.

AF016283    AF016283     2621bp    DNA      PLN      21-JUL-1998
    Arabidopsis thaliana 5'-adenylylsulfate reductase (APR2) gene, complete
     cds.
    APR2; 5'-adenylylsulfate reductase.

AF016284    AF016284     2945bp    DNA      PLN      21-JUL-1998
    Arabidopsis thaliana 5'-adenylylsulfate reductase (APR3) gene, complete
     cds.
    APR3; 5'-adenylylsulfate reductase.

AF051135    AF051135     1665bp    mRNA     PLN      22-JUL-1998
    Arabidopsis thaliana putative ubiquitin activating enzyme E1 (ECR1) mRNA,
     complete cds.
    ECR1; putative ubiquitin activating enzyme E1.

ATAJ2490    AJ002490      925bp    DNA      PLN      17-JUL-1998
    Arabidopsis thaliana plastid ndhB gene, exon 1 and joined CDS.
    ndhB gene; ndhB.

ATAJ2491    AJ002491     1413bp    DNA      PLN      17-JUL-1998
    Arabidopsis thaliana plastid ndhB gene, exon 2.
    ndhB gene; ndhB.

ATSEB1      Y14423     2271bp    mRNA     PLN      17-JUL-1998
    Arabidopsis thaliana mRNA for cell wall protein SEB1.
    cell wall protein; SEB1 gene; SEB1; putative cell wall protein.

ATSEB2      Y14424     1244bp    mRNA     PLN      17-JUL-1998
    Arabidopsis thaliana mRNA for hypothetical protein SEB2, partial.
    SEB2 gene; SEB2; hypothetical protein.

ATSULFRED   Y10157     6055bp    DNA      PLN      17-JUL-1998
    A.thaliana gene encoding sulfite reductase.
    sulfite reductase.

ATU56921    U56921     1450bp    mRNA     PLN      21-JUL-1998
    Arabidopsis thaliana 5'adenylylphosphosulfate reductase (APR2) mRNA,
     complete cds.
    APR2; 5'-adenylylphosphosulfate reductase.

ATU56922    U56922     1482bp    mRNA     PLN      21-JUL-1998
    Arabidopsis thaliana 5'-adenylylphosphosulfate reductase (APR3) mRNA,
     partial cds.
    APR3; 5'-adenylylphosphosulfate reductase.

ATY12555    Y12555      936bp    mRNA     PLN      20-JUL-1998
    A.thaliana mRNA for alanyl tRNA synthetase.
    alanyl tRNA synthetase; AlaRS gene; AlaRS; alanyl t-RNA synthetase.

ATY14403    Y14403    13973bp    DNA      PLN      17-JUL-1998
    Arabidopsis thaliana SEB1, ISA1 genes.
    arabinose kinase; ISA1 gene; SEB1 gene; SEB1; ISA1.

ATY14404    Y14404     3352bp    DNA      PLN      17-JUL-1998
    Arabidopsis thaliana ISA1 gene.
    arabinose kinase; ISA1 gene; ISA1; putative arabinose kinase.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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