New Arabidopsis DNA 06-Jun-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Jun 6 13:53:49 EST 1998


====================== New DNA Sequences =======================

AB005804    AB005804     4484bp    mRNA     PLN      02-JUN-1998
    Arabidopsis thaliana atAO-1 mRNA for aldehyde oxidase, complete cds.
    aldehyde oxidase; atAO-1.

AB005805    AB005805     4228bp    mRNA     PLN      02-JUN-1998
    Arabidopsis thaliana atAO-2 mRNA for aldehyde oxidase, complete cds.
    aldehyde oxidase; atAO-2.

AB010080    AB010080     3049bp    mRNA     PLN      02-JUN-1998
    Arabidopsis thaliana atAO-3 mRNA for aldehyde oxidase, partial cds.
    atAO-3; aldehyde oxidase.

AC004786    AC004786    92854bp    DNA      HTG      02-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20K9'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 9 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004793    AC004793    84736bp    DNA      HTG      03-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     F28K20 sequence; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AF007109    AF007109     1358bp    mRNA     PLN      02-JUN-1998
    Arabidopsis thaliana mRNA, similar to yeast dcp1, complete cds.

AF017641    AF017641      450bp    mRNA     PLN      01-JUN-1998
    Arabidopsis thaliana nucleoside diphosphate kinase type 1 (NDPK1) gene,
     complete cds.
    NDPK1; nucleoside diphosphate kinase type 1.

AF055635    AF055635     1973bp    mRNA     PLN      02-JUN-1998
    Arabidopsis thaliana protein tyrosine phosphatase 1 (PTP1) mRNA, complete
     cds.
    PTP1; protein tyrosine phosphatase 1.

AF062589    AF062589     4938bp    DNA      PLN      01-JUN-1998
    Arabidopsis thaliana 3-keto-acyl-CoA thiolase 2 (PKT2) and
     3-keto-acyl-CoA-thiolase 1 (PKT1) genes, complete cds.
    PKT1; 3-keto-acyl-CoA-thiolase 1; PKT2; 3-keto-acyl-CoA thiolase 2.

AF064082    AF064082     1298bp    DNA      PLN      03-JUN-1998
    Arabidopsis thaliana ROP1 GTPase (ROP1) gene, promoter region.
    ROP1; ROP1 GTPase.

AF065639    AF065639     2686bp    DNA      PLN      04-JUN-1998
    Arabidopsis thaliana cucumisin-like serine protease (ARA12) gene,
     complete cds.
    ARA12; cucumisin-like serine protease.

AF067141    AF067141     1050bp    mRNA     PLN      01-JUN-1998
    Arabidopsis thaliana gamma-glutamyl hydrolase mRNA, complete cds.
    gamma-glutamyl hydrolase.

AF067789    AF067789     1215bp    mRNA     PLN      04-JUN-1998
    Arabidopsis thaliana tSNARE (AtTLG2) mRNA, complete cds.
    AtTLG2; tSNARE.

ATH223845   AJ223845       85bp    DNA      PLN      01-JUN-1998
    Arabidopsis thaliana Z20 small nucleolar RNA gene.
    small nucleolar RNA; snoRNA gene; Z20 snoRNA; Z20 small nucleolar RNA.

ATH224036   AJ224036       85bp    DNA      PLN      01-JUN-1998
    Arabidopsis thaliana U24 small nucleolar RNA gene.
    small nucleolar RNA; snoRNA gene; U24 snoRNA; U24 small nucleolar RNA.

ATU97217    U97217      507bp    DNA      PLN      04-JUN-1998
    Arabidopsis thaliana disease resistance protein homolog (pNd1) gene,
     partial cds.
    pNd1; disease resistance protein homolog.

ATU97218    U97218      438bp    DNA      PLN      04-JUN-1998
    Arabidopsis thaliana disease resistance protein homolog (pNd2) gene,
     partial cds.
    pNd2; disease resistance protein homolog.

ATU97219    U97219      513bp    DNA      PLN      04-JUN-1998
    Arabidopsis thaliana disease resistance protein homolog (pNd3) gene,
     partial cds.
    pNd3; disease resistance protein homolog.

ATU97220    U97220      513bp    DNA      PLN      04-JUN-1998
    Arabidopsis thaliana disease resistance protein homolog (pNd4) gene,
     partial cds.
    pNd4; disease resistance protein homolog.

ATU97221    U97221      513bp    DNA      PLN      04-JUN-1998
    Arabidopsis thaliana disease resistance protein homolog (pNd10) gene,
     partial cds.
    pNd10; disease resistance protein homolog.

ATU97222    U97222      513bp    DNA      PLN      04-JUN-1998
    Arabidopsis thaliana disease resistance protein homolog (pCol1) gene,
     partial cds.
    pCol1; disease resistance protein homolog.

==================== Updated DNA Sequences =====================

AC003040    AC003040   129114bp    DNA      HTG      30-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F26B6'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC003970    AC003970    95865bp    DNA      PLN      03-JUN-1998
    Arabidopsis thaliana chromosome I BAC F14J9 genomic sequence, complete
     sequence.
    HTG.

AC003979    AC003979    83163bp    DNA      PLN      02-JUN-1998
    Arabidopsis thaliana chromosome 1 BAC T22J18, complete sequence.
    HTG.

AC004122    AC004122    67878bp    DNA      PLN      03-JUN-1998
    Arabidopsis thaliana chromosome I BAC T27I1 genomic sequence, complete
     sequence.
    HTG.

AC004260    AC004260    83822bp    DNA      PLN      03-JUN-1998
    Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete
     sequence.
    HTG.

AC004411    AC004411   108688bp    DNA      HTG      03-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14M4'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004450    AC004450    93469bp    DNA      HTG      03-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14B2'
     genomic sequence near marker 'CIC10F02'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004625    AC004625    48763bp    DNA      HTG      30-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T26J13'
     genomic sequence near marker 'CIC11C08'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004680    AC004680    97011bp    DNA      HTG      04-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F23F1'
     genomic sequence near marker 'm283'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004681    AC004681    78468bp    DNA      HTG      03-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T26B15'
     genomic sequence near marker 'TEn5'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC004684    AC004684   102091bp    DNA      HTG      02-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13M22'
     genomic sequence near marker 've018'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC004697    AC004697   121071bp    DNA      HTG      02-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16B24'
     genomic sequence near marker 'CIC10A06'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

ATAC002392  AC002392   105528bp    DNA      PLN      03-JUN-1998
    Arabidopsis thaliana chromosome II BAC T20K24 genomic sequence, complete
     sequence.
    HTG; T20K24.1; T20K24.2; putative proline-rich protein APG; T20K24.3;
     T20K24.4; T20K24.5; T20K24.6; T20K24.7; T20K24.8; putative anthranilate
     N-hydroxycinnamoyl/benzoyltransferase; T20K24.9; T20K24.10; bZIP-like
     protein; T20K24.11; putative zinc-finger protein; T20K24.12; T20K24.13;
     putative cadmium-transporting ATPase; T20K24.14; putative tRNA-splicing
     endonuclease positive effector; T20K24.15; putative receptor-like
     protein kinase; T20K24.16; T20K24.17; putative pectinesterase;
     T20K24.18; T20K24.19; putative serine proteinase; T20K24.20; T20K24.21;
     putative protein kinase; T20K24.25; T20K24.22; T20K24.23; T20K24.24;
     putative protein kinase, 5'partial.

ATAC004136  AC004136    98957bp    DNA      PLN      04-JUN-1998
    Arabidopsis thaliana chromosome II BAC T8K22 genomic sequence, complete
     sequence.
    HTG; T8K22.1; T8K22.2; T8K22.3; T8K22.4; T8K22.5; T8K22.6; T8K22.7;
     T8K22.8; T8K22.9; T8K22.10; tRNA-Ala; T8K22.11; putative small
     multi-drug export protein; T8K22.12; putative cytochrome P450; T8K22.13;
     T8K22.14; putative TBP-binding protein; T8K22.15; T8K22.16; T8K22.17;
     T8K22.18; reverse-transcriptase-like protein; T8K22.19; T8K22.20;
     T8K22.21; T8K22.22; putative DNA polymerase III gamma subunit; T8K22.23;
     putative nucleic acid binding protein, 5' partial.

ATAC004401  AC004401    94038bp    DNA      PLN      30-MAY-1998
    Arabidopsis thaliana chromosome II BAC F21P24 genomic sequence, complete
     sequence.
    HTG; F21P24.1; putative chloroplast envelope Ca2+-ATPase, 5' partial;
     F21P24.2; F21P24.3; putative serine carboxypeptidase I; F21P24.4;
     F21P24.5; F21P24.6; F21P24.7; F21P24.8; tRNA-Met; F21P24.9; putative
     protein kinase; F21P24.10; F21P24.11; F21P24.12; putative
     N-acetyltransferase; F21P24.13; putative casein kinase II catalytic
     subunit; F21P24.14; F21P24.15; F21P24.16; F21P24.17; putative LEA
     protein; F21P24.18; F21P24.19; putative proline-rich protein; F21P24.20;
     F21P24.21; putative metal ion transporter (Nramp).

=========== Updated Sequence Features/Annotations  =============

AB008518    AB008518      980bp    mRNA     PLN      02-JUN-1998
    Arabidopsis thaliana RMA1 mRNA, complete cds.
    RMA1.

ATHTHIOGL   L11454     1791bp    mRNA     PLN      04-JUN-1998
    Arabidopsis thaliana thioglucosidase mRNA, complete cds.
    thioglucosidase.

ATU91995    U91995     3473bp    mRNA     PLN      02-JUN-1998
    Arabidopsis thaliana Argonaute protein (AGO1) mRNA, complete cds.
    AGO1; Argonaute protein.

ATU94746    U94746     1279bp    mRNA     PLN      04-JUN-1998
    Arabidopsis thaliana WD repeat protein ATAN11 mRNA, complete cds.
    ATAN11.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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