New Arabidopsis DNA 13-Jun-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Jun 13 12:21:16 EST 1998


====================== New DNA Sequences =======================

AC004809    AC004809    93890bp    DNA      HTG      07-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     F13M7 sequence; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AF060941    AF060941     2978bp    mRNA     PLN      10-JUN-1998
    Arabidopsis thaliana cultivar Columbia extra-large G-protein (XLG) mRNA,
     complete cds.
    XLG; extra-large G-protein.

AF060942    AF060942     4082bp    DNA      PLN      10-JUN-1998
    Arabidopsis thaliana cultivar Landsberg extra-large G-protein (XLG) gene,
     complete cds.
    XLG; extra-large G-protein.

AF062590    AF062590     1470bp    mRNA     PLN      08-JUN-1998
    Arabidopsis thaliana peroxisomal-3-keto-acyl-CoA thiolase 1 (PKT1) mRNA,
     complete cds.
    PKT1; peroxisomal-3-keto-acyl-CoA thiolase 1.

AF069716    AF069716    99123bp    DNA      PLN      11-JUN-1998
    Arabidopsis Thaliana BAC F6A4, Chromosome IV, near 60.5 cM, complete
     sequence.
    HTG.

ATH6021     AJ006021     1894bp    mRNA     PLN      05-JUN-1998
    Arabidopsis thaliana mRNA for putative PRL1 associated protein.
    PRL1 associated protein; putative; putative PRL1 associated protein.

ATH6598     AJ006598     1276bp    DNA      PLN      08-JUN-1998
    Arabidopsis thaliana tapetum-specific A3 gene.
    A3 gene; tapetum-specific protein; A3.

F3D13       AF069300    35259bp    DNA      PLN      09-JUN-1998
    Arabidopsis thaliana BAC F3D13.
    F3D13.3; F3D13.4; F3D13.2; F3D13.5; F3D13.1.

F6N15       AF069299    95643bp    DNA      PLN      09-JUN-1998
    Arabidopsis thaliana BAC F6N15.
    F6N15.14; F6N15.13; F6N15.12; F6N15.11; F6N15.10; F6N15.15; F6N15.9;
     tRNA-OTHER; F6N15.8; F6N15.7; F6N15.16; F6N15.18; F6N15.6; F6N15.19;
     F6N15.20; F6N15.5; F6N15.21; F6N15.22; F6N15.23; F6N15.24; F6N15.25;
     F6N15.4; F6N15.3; F6N15.2.

T14P8       AF069298    94536bp    DNA      PLN      09-JUN-1998
    Arabidopsis thaliana BAC T14P8.
    T14P8.11; T14P8.24; T14P8.23; T14P8.10; T14P8.8; T14P8.7; T14P8.6;
     T14P8.5; T14P8.22; T14P8.21; T14P8.4; T14P8.3; T14P8.20; T14P8.19;
     T14P8.2; T14P8.18; T14P8.17; T14P8.16; T14P8.15; T14P8.14; T14P8.1;
     T14P8.13.

==================== Updated DNA Sequences =====================

AC003040    AC003040   129114bp    DNA      HTG      10-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F26B6'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC003672    AC003672   111530bp    DNA      HTG      09-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16B22'
     genomic sequence near marker 'm336'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC004218    AC004218   102359bp    DNA      HTG      10-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12L6'
     genomic sequence near marker 'CIC10A06'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004481    AC004481   114915bp    DNA      HTG      10-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13P17'
     genomic sequence near marker 've016'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC004483    AC004483    85462bp    DNA      HTG      06-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T12J2'
     genomic sequence near marker 'mi421'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004561    AC004561   137588bp    DNA      HTG      09-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16P2'
     genomic sequence near marker 'mi54'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC004665    AC004665   111152bp    DNA      HTG      08-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F4I18'
     genomic sequence near marker 'CIC02E07'; HTGS phase 1, 5 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004667    AC004667    95616bp    DNA      HTG      06-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4C15'
     genomic sequence near marker 've016'; HTGS phase 1, 8 unordered pieces.
    HTG; HTGS_PHASE1.

AC004681    AC004681    78732bp    DNA      HTG      06-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T26B15'
     genomic sequence near marker 'TEn5'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004683    AC004683    92972bp    DNA      HTG      05-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T19C21'
     genomic sequence near marker 've018'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC004697    AC004697   121161bp    DNA      HTG      09-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16B24'
     genomic sequence near marker 'CIC10A06'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004705    AC004705    98630bp    DNA      HTG      06-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F26C24'
     genomic sequence near marker 'mi398'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC004786    AC004786    94373bp    DNA      HTG      05-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20K9'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 8 unordered
     pieces.
    HTG; HTGS_PHASE1.

ATAC004669  AC004669    89779bp    DNA      PLN      10-JUN-1998
    Arabidopsis thaliana chromosome II BAC F7F1 genomic sequence, complete
     sequence.
    HTG; F7F1.1; putative RNA helicase A; F7F1.2; F7F1.3; F7F1.4; putative
     2A6 protein; F7F1.5; F7F1.6; tRNA-Ala; F7F1.7; glutathione
     S-transferase; F7F1.8; F7F1.9; F7F1.10; F7F1.11; F7F1.12; Sop2p-like
     protein; F7F1.13; dihydroxypolyprenylbenzoate methyltransferase;
     F7F1.14; F7F1.15; putative serine/threonine protein kinase; F7F1.16;
     putative cell division protein; F7F1.17; F7F1.18; aspartate
     aminotransferase; F7F1.19; shaggy-like kinase dzeta; F7F1.20; F7F1.21;
     F7F1.22; putative protein kinase MAP3K; F7F1.23; putative SWH1 protein;
     F7F1.24; F7F1.25; F7F1.26; F7F1.27; putative blue copper-binding
     protein; F7F1.28; putative GTP-binding protein, 5' partial.

=========== Updated Sequence Features/Annotations  =============

ATAJ3215    AJ003215     3061bp    DNA      PLN      05-JUN-1998
    Arabidopsis thaliana GTL1 gene.
    GTL1 gene; GTL1.

ATAJ3216    AJ003216     3752bp    DNA      PLN      05-JUN-1998
    Arabidopsis thaliana GTL2 gene.
    GTL2 gene; GTL2.

ATAJ3217    AJ003217     2415bp    DNA      PLN      05-JUN-1998
    Arabidopsis thaliana GT2 gene.
    GT2 gene; GT2.

ATAJ3218    AJ003218     1301bp    mRNA     PLN      05-JUN-1998
    Arabidopsis thaliana partial GTL1 mRNA.
    GTL1 gene; GTL1.

D78598      D78598     1663bp    mRNA     PLN      09-JUN-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds, clone P450-2.
    cytochrome P450 monooxygenase; CYP83B1.

D78599      D78599     1650bp    mRNA     PLN      09-JUN-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds, clone P450-3.
    CYP83A1; cytochrome P450 monooxygenase.

D78600      D78600     1893bp    mRNA     PLN      09-JUN-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds, clone P450-4.
    CYP76C1; cytochrome P450 monooxygenase.

D78601      D78601     1633bp    mRNA     PLN      09-JUN-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds, clone P450-12.
    CYP71B5; cytochrome P450 monooxygenase.

D78602      D78602     1549bp    mRNA     PLN      09-JUN-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds, clone P450-13-1.
    CYP71B3; cytochrome P450 monooxygenase.

D78603      D78603     1694bp    mRNA     PLN      09-JUN-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds, clone P450-13-6.
    CYP71B4; cytochrome P450 monooxygenase.

D78604      D78604     1655bp    mRNA     PLN      09-JUN-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds, clone P450-23.
    CYP71B6; cytochrome p450 monooxygenase.

D78605      D78605     1620bp    mRNA     PLN      09-JUN-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds, clone P450-48.
    CYP71B2; cytochrome P450 monooxygenase.

D78606      D78606     1580bp    mRNA     PLN      09-JUN-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds, clone P450-65.
    CYP91A1; cytochrome P450 monooxygenase.

D78607      D78607     1652bp    mRNA     PLN      09-JUN-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds, clone P450-66-8.
    CYP91A2; cytochrome P450 monooxygenase.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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