New Arabidopsis DNA 27-Jun-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Jun 27 15:18:24 EST 1998


====================== New DNA Sequences =======================

AC005167    AC005167   103062bp    DNA      HTG      23-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12A24'
     genomic sequence near marker 'mi398'; HTGS phase 1, 11 unordered pieces.
    HTG; HTGS_PHASE1.

AC005168    AC005168    97085bp    DNA      HTG      23-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12C20'
     genomic sequence near marker 'B68'; HTGS phase 1, 9 unordered pieces.
    HTG; HTGS_PHASE1.

AC005169    AC005169   135003bp    DNA      HTG      23-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F6F22'
     genomic sequence near marker 'mi148'; HTGS phase 1, 14 unordered pieces.
    HTG; HTGS_PHASE1.

AC005170    AC005170   116723bp    DNA      HTG      23-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T29E15'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 18 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005171    AC005171   149266bp    DNA      HTG      23-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4E14'
     genomic sequence near marker 'mi310'; HTGS phase 1, 17 unordered pieces.
    HTG; HTGS_PHASE1.

AF033535    AF033535     1215bp    mRNA     PLN      25-JUN-1998
    Arabidopsis thaliana putative zinc transporter (ZIP1) mRNA, complete cds.
    ZIP1; putative zinc transporter.

AF033536    AF033536     1150bp    mRNA     PLN      25-JUN-1998
    Arabidopsis thaliana putative zinc transporter (ZIP2) mRNA, complete cds.
    ZIP2; putative zinc transporter.

AF033537    AF033537     1249bp    mRNA     PLN      25-JUN-1998
    Arabidopsis thaliana putative zinc transporter (ZIP3) mRNA, complete cds.
    ZIP3; putative zinc transporter.

AF055353    AF055353     3888bp    DNA      PLN      22-JUN-1998
    Arabidopsis thaliana respiratory burst oxidase protein A (RbohA) gene,
     complete cds.
    RbohA; respiratory burst oxidase protein A.

AF055354    AF055354     3917bp    DNA      PLN      22-JUN-1998
    Arabidopsis thaliana respiratory burst oxidase protein B (RbohB) gene,
     complete cds.
    RbohB; respiratory burst oxidase protein B.

AF055355    AF055355     4920bp    DNA      PLN      22-JUN-1998
    Arabidopsis thaliana respiratory burst oxidase protein C (RbohC) gene,
     complete cds.
    RbohC; respiratory burst oxidase protein C.

AF055356    AF055356     5280bp    DNA      PLN      22-JUN-1998
    Arabidopsis thaliana respiratory burst oxidase protein E (RbohE) gene,
     complete cds.
    RbohE; respiratory burst oxidase protein E.

AF055357    AF055357     3035bp    mRNA     PLN      22-JUN-1998
    Arabidopsis thaliana respiratory burst oxidase protein D (RbohD) mRNA,
     complete cds.
    RbohD; respiratory burst oxidase protein D.

AF069441    AF069441   105830bp    DNA      PLN      23-JUN-1998
    Arabidopsis thaliana BAC T19B17 from chromsome IV, near 19.3 cM, complete
     sequence.
    HTG.

AF069442    AF069442    98913bp    DNA      PLN      22-JUN-1998
    Arabidopsis thaliana BAC T4I9, Chromosome IV, near 16.6cM, complete
     sequence.
    HTG.

AF072134    AF072134     1564bp    mRNA     PLN      23-JUN-1998
    Arabidopsis thaliana TCP3 mRNA, complete cds.
    TCP3.

ATAJ4338    AJ224338     4813bp    DNA      PLN      22-JUN-1998
    Arabidopsis thaliana ASKbeta gene, complete CDS.
    AKSbeta gene; shaggy-like kinase beta; ASKbeta.

ATH17593    Y17593     2837bp    DNA      PLN      22-JUN-1998
    Arabidopsis thaliana MVD1 gene, exons 1 to 9.
    mevalonate diphosphate decarboxylase; MVD1 gene; MVD1.

ATHSF3      Y14068     1791bp    mRNA     PLN      24-JUN-1998
    Arabidopsis thaliana mRNA for heat shock factor 3.
    heat shock factor 3; HSF3 gene; HSF3; Heat Shock Factor 3.

ATHSF4      Y14069     1144bp    mRNA     PLN      24-JUN-1998
    Arabidopsis thaliana mRNA for heat shock factor 4.
    heat shock factor 4; HSF4 gene; HSF4; Heat Shock Factor 4.

ATHSP176A   Y14070      632bp    mRNA     PLN      24-JUN-1998
    Arabidopsis thaliana mRNA for heat shock protein 17.6A.
    heat shock protein 17.6A; hsp17.6A gene; HSP17.6A; Heat Shock Protein
     17.6A.

ATMDH       Y13987     1420bp    mRNA     PLN      24-JUN-1998
    Arabidopsis thaliana mRNA for chloroplast NAD-dependent malate
     dehydrogenase.
    NAD-dependent malate dehydrogenase; mdh; chloroplast NAD-MDH.

ATT16H5     AL024486    95417bp    DNA      PLN      19-JUN-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone T16H5 (ESSAII project).
    T16H5.10; putative protein; T16H5.20; T16H5.30; T16H5.40; putative Fe(II)
     transport protein; T16H5.50; Fe(II) transport protein; T16H5.60;
     T16H5.70; aspartate kinase-homoserine dehydrogenase - like protein;
     T16H5.80; T16H5.90; T16H5.100; T16H5.110; chitinase - like protein;
     T16H5.120; T16H5.130; T16H5.140; putative LTR retrotransposon
     (fragment); T16H5.150; T16H5.160; T16H5.170; putative chitinase;
     T16H5.180; T16H5.190; T16H5.200; lectin like protein; T16H5.210;
     T16H5.220; T16H5.230; T16H5.240.

E13983      E13983     4864bp    DNA      PAT      27-APR-1998
    Arabidopsis thaliana gene for phosphate transporter.
    JP 1997252782-A/1.

E13984      E13984     1875bp    DNA      PAT      27-APR-1998
    Arabidopsis thaliana promoter for phosphate transporter gene.
    JP 1997252782-A/2.

E13985      E13985     1766bp    DNA      PAT      27-APR-1998
    Arabidopsis thaliana mRNA for phosphate transporter.
    JP 1997252782-A/3.

==================== Updated DNA Sequences =====================

AC004138    AC004138   103488bp    DNA      HTG      20-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17M13'
     genomic sequence near marker 'CIC11A04'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004411    AC004411   108691bp    DNA      HTG      20-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14M4'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004481    AC004481   114889bp    DNA      HTG      23-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13P17'
     genomic sequence near marker 've016'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC004665    AC004665   109700bp    DNA      HTG      23-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F4I18'
     genomic sequence near marker 'CIC02E07'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004680    AC004680    90743bp    DNA      HTG      20-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F23F1'
     genomic sequence near marker 'm283'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC004705  AC004705    89840bp    DNA      PLN      24-JUN-1998
    Arabidopsis thaliana chromosome II BAC F26C24 genomic sequence, complete
     sequence.
    HTG; F26C24.1; F26C24.2; F26C24.3; F26C24.4; F26C24.5; F26C24.6;
     F26C24.7; putative MuDR protein; F26C24.8; F26C24.9; F26C24.10;
     F26C24.11; APS kinase; F26C24.12; vacuolar sorting receptor-like
     protein; F26C24.13; F26C24.14; F26C24.15.

AC004786    AC004786    93936bp    DNA      HTG      23-JUN-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20K9'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005106    AC005106    84968bp    DNA      HTG      25-JUN-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T25N20; HTGS phase 2, 2 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC003040  AC003040   123360bp    DNA      PLN      20-JUN-1998
    Arabidopsis thaliana chromosome II BAC F26B6 genomic sequence, complete
     sequence.
    HTG; F26B6.1; F26B6.2; F26B6.3; curly leaf protein (polycomb-group);
     F26B6.4; F26B6.5; F26B6.6; F26B6.7; putative nicotinate
     phosphoribosyltransferase; F26B6.8; cyclin-dependent kinase inhibitor
     protein; F26B6.9; F26B6.10; putative serine/threonine protein kinase;
     F26B6.11; putative guanine nucleotide-binding protein; F26B6.12;
     F26B6.13; F26B6.14; F26B6.15; putative transposase; F26B6.16;
     hypersensitivity-related protein; F26B6.17; F26B6.18; F26B6.19; putative
     APG protein; F26B6.20; putative host response protein (Pir7); F26B6.21;
     F26B6.22; putative acetone-cyanohydrin lyase; F26B6.23; F26B6.24;
     F26B6.25; F26B6.26; F26B6.27; F26B6.28; putative pectinesterase;
     F26B6.29; F26B6.30; tRNA-Met; F26B6.31; F26B6.32.

ATAC004705  AC004705    89840bp    DNA      PLN      24-JUN-1998
    Arabidopsis thaliana chromosome II BAC F26C24 genomic sequence, complete
     sequence.
    HTG; F26C24.1; F26C24.2; F26C24.3; F26C24.4; F26C24.5; F26C24.6;
     F26C24.7; putative MuDR protein; F26C24.8; F26C24.9; F26C24.10;
     F26C24.11; APS kinase; F26C24.12; vacuolar sorting receptor-like
     protein; F26C24.13; F26C24.14; F26C24.15.

=========== Updated Sequence Features/Annotations  =============

AF008444    AF008444     7875bp    DNA      PLN      25-JUN-1998
    Arabidopsis thaliana chloroplast processing enzyme (CPE) gene, complete
     cds.
    CPE; chloroplast processing enzyme.

ATH6961     AJ006961      870bp    DNA      PLN      22-JUN-1998
    Arabidopsis thaliana p15a gene, partial.
    p15a gene; peroxidase; p15a.

ATU05238    U05238     1077bp    mRNA     PLN      23-JUN-1998
    Arabidopsis thaliana APS kinase mRNA, complete cds.
    APS kinase.

ATU97200    U97200     2595bp    mRNA     PLN      24-JUN-1998
    Arabidopsis thaliana cobalamin-independent methionine synthase (ATCIMS)
     mRNA, complete cds.
    ATCIMS; cobalamin-independent methionine synthase.

ATY16327    Y16327     2547bp    mRNA     PLN      24-JUN-1998
    Arabidopsis thaliana mRNA for putative cyclic nucleotide-regulated ion
     channel, cngc1.
    cngc1 gene; cyclic nucleotide-regulated ion channel; cngc1; putative
     cyclic nucleotide-regulated ion channel.

ATY16328    Y16328     2398bp    DNA      PLN      24-JUN-1998
    Arabidopsis thaliana mRNA for putative cyclic nucleotide-regulated ion
     channel, cngc2.
    cngc2 gene; cyclic nucleotide-regulated ion channel; cngc2; putative
     cyclic nucleotide-regulated ion channel.

U89959      U89959   106973bp    DNA      PLN      26-JUN-1998
    Arabidopsis thaliana BAC T7I23, complete sequence.
    HTG; T7I23.1; T7I23.2; T7I23.3; C2H2 zinc finger protein; T7I23.4;
     T7I23.14; T7I23.15; T7I23.16; T7I23.5; T7I23.6; ARA-5; T7I23.7; T7I23.8;
     T7I23.17; T7I23.9; CER1-like protein; T7I23.10; CER1 protein; T7I23.18;
     T7I23.19; T7I23.20; T7I23.21; T7I23.22; T7I23.11; T7I23.12; cathepsin
     B-like cysteine proteinase; T7I23.13.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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