New Arabidopsis DNA 07-Mar-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sun Mar 8 13:37:09 EST 1998


====================== New DNA Sequences =======================

AB011474    AB011474    79899bp    DNA      PLN      04-MAR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K2A18,
     complete sequence.
    HTG.

AB011475    AB011475    60583bp    DNA      PLN      04-MAR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K9L2, complete
     sequence.
    HTG.

AB011476    AB011476    82033bp    DNA      PLN      04-MAR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MDA7, complete
     sequence.
    HTG.

AB011477    AB011477    78181bp    DNA      PLN      04-MAR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MHK7, complete
     sequence.
    HTG.

AB011478    AB011478    47460bp    DNA      PLN      04-MAR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MKD10, complete
     sequence.
    HTG.

AB011479    AB011479    88356bp    DNA      PLN      04-MAR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MNA5, complete
     sequence.
    HTG.

AB011480    AB011480    40548bp    DNA      PLN      04-MAR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MPI7, complete
     sequence.
    HTG.

AB011481    AB011481    26624bp    DNA      PLN      04-MAR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MSI17, complete
     sequence.
    HTG.

AB011482    AB011482    83478bp    DNA      PLN      04-MAR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUA2, complete
     sequence.
    HTG.

AB011483    AB011483    77298bp    DNA      PLN      04-MAR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUF9, complete
     sequence.
    HTG.

AB011484    AB011484    13474bp    DNA      PLN      04-MAR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXE10, complete
     sequence.
    HTG.

AB011485    AB011485    87210bp    DNA      PLN      04-MAR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXH1, complete
     sequence.
    HTG.

AC004238    AC004238   122770bp    DNA      HTG      01-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19I3'
     genomic sequence near marker 've016'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC004255    AC004255    97675bp    DNA      HTG      04-MAR-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T1F9; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AF022909    AF022909     2912bp    mRNA     PLN      02-MAR-1998
    Arabidopsis thaliana ClpC mRNA, nuclear gene encoding chloroplast
     protein, complete cds.
    ClpC.

AF036234    AF036234     2137bp    mRNA     PLN      02-MAR-1998
    Arabidopsis thaliana vacuolar protein sorting homolog (VPS45) mRNA,
     complete cds.
    VPS45; vacuolar protein sorting homolog.

AF040631    AF040631     2239bp    DNA      PLN      03-MAR-1998
    Arabidopsis thaliana IAA17/AXR3 protein (AXR3) gene, complete cds.
    AXR3; IAA17/AXR3 protein.

AF040632    AF040632     2239bp    DNA      PLN      03-MAR-1998
    Arabidopsis thaliana IAA17/AXR3-1 protein (AXR3) gene, complete cds.
    AXR3; IAA17/AXR3-1 protein.

AF047031    AF047031     4918bp    DNA      PLN      03-MAR-1998
    Arabidopsis thaliana IAA-amino acid hydrolase (ILL1 and ILL2) genes,
     complete cds.
    ILL1; IAA-amino acid hydrolase; ILL2.

ATAJ4119    AJ224119     1694bp    mRNA     PLN      25-FEB-1998
    Arabidopsis thaliana mRNA AT-hook protein 2.
    AHP2 gene; AT-hook protein 2; AHP2.

ATAJ4122    AJ224122     3059bp    DNA      PLN      27-FEB-1998
    Arabidopsis thaliana BBFa gene.
    BBFa gene; transcription factor; BBFa; DNA-binding protein.

ATM4E13     AL022023    80346bp    DNA      PLN      02-MAR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone M4E13 (ESSAII project).
    M4E13.10; EF-1 alpha - like protein (fragment); M4E13.20; cyclophilin -
     like protein; M4E13.30; actin depolymerizing factor - like protein;
     M4E13.40; subtilisin proteinase - like; M4E13.50; MYB- like protein;
     M4E13.60; L-ascorbate peroxidase; M4E13.70; beta-galactosidase - like
     protein; M4E13.80; Rho1Ps homolog/ Rac-like protein; M4E13.90; protein
     kinase - like; M4E13.100; putative protein; M4E13.110; WD-40 repeat
     protein (MSI3); M4E13.120; M4E13.130; M4E13.140; catalase; M4E13.150;
     plasma membrane intrinsic protein (SIMIP); M4E13.160; M4E13.170;
     M4E13.180; M4E13.190; hypothetical protein.

==================== Updated DNA Sequences =====================

AC002423    AC002423    99363bp    DNA      HTG      27-FEB-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T23E23; HTGS phase 2, 2 ordered pieces.
    HTG; HTGS_PHASE2.

AC002521    AC002521    81004bp    DNA      HTG      28-FEB-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20F6'
     genomic sequence near marker 'CIC11A04'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004077    AC004077    81764bp    DNA      HTG      01-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T31E10'
     genomic sequence near marker 've016'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC004138    AC004138   101428bp    DNA      HTG      04-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17M13'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

ATAC002334  AC002334    93158bp    DNA      PLN      04-MAR-1998
    Arabidopsis thaliana chromosome II BAC F25I18 genomic sequence, complete
     sequence.
    HTG; F25I18.1; F25I18.2; putative myosin heavy chain; F25I18.3; putative
     dimethylaniline monooxygenase; F25I18.4; F25I18.5; putative
     mitochondrial chaperonin HSP60 precursor; F25I18.6; F25I18.7; F25I18.8;
     F25I18.9; putative receptor protein kinase; F25I18.10; putative
     polygalacturonase; F25I18.11; putative 3-ketoacyl-CoA thiolase;
     F25I18.12; tRNA-Met; F25I18.13; F25I18.14; similar to synaptobrevin;
     F25I18.15; F25I18.16; putative cellulose synthase; F25I18.17; F25I18.18;
     similar to disease resistance protein; F25I18.19; similar to jasmonate
     inducible protein; F25I18.20; F25I18.21; F25I18.22; mitochondrial
     F1-ATPase, gamma subunit; F25I18.23; F25I18.24; F25I18.25; F25I18.26.

ATAC003974  AC003974    92612bp    DNA      PLN      27-FEB-1998
    Arabidopsis thaliana chromosome II BAC F24L7 genomic sequence, complete
     sequence.
    HTG; F24L7.1; putative cyclin g-associated kinase; F24L7.2; F24L7.3;
     putative phosphate transporter; F24L7.4; F24L7.5; putative
     beta-D-galactosidase; F24L7.6; putative protein kinase; F24L7.7;
     putative ubiquitin conjugating enzyme; F24L7.8; putative ubiquitin
     specific protease; F24L7.9; putative purple acid phosphatase; F24L7.10;
     F24L7.11; F24L7.12; F24L7.13; tRNA-processing protein SEN3-like;
     F24L7.14; putative cytochrome b5; F24L7.15; F24L7.16; F24L7.17;
     F24L7.18; putative disease resistance protein (Cf-2.2); F24L7.19;
     putative homeobox protein; F24L7.20; F24L7.21; F24L7.22.

ATPRL2RNA   X82826     1672bp    mRNA     PLN      27-FEB-1998
    A.thaliana PRL2 mRNA.
    PRL2 gene; PRL2.

=========== Updated Sequence Features/Annotations  =============

ATBBFA      X97941     1476bp    mRNA     PLN      25-FEB-1998
    A.thaliana mRNA for zinc finger protein, BBFa.
    zinc finger protein; AtBBFa; Zn finger protein.

ATJ001148   AJ001148     3387bp    DNA      PLN      02-MAR-1998
    Arabidopsis thaliana CBL1 gene.
    cbl gene; CBL1.

ATKASIIIG   Y11689     2640bp    DNA      PLN      02-MAR-1998
    A.thaliana KAS III gene.
    3-ketoacyl-acyl carrier protein synthase III; KAS III gene; KAS III.

ATNIT213    Y07648    13694bp    DNA      PLN      27-FEB-1998
    A.thaliana nit2 gene, nit1 gene and nit3 gene.
    nit1 gene; NIT2 gene; nit3 gene; nitrilase; nit2; nitrilase 2; nit1;
     nitrilase 1; nit3; nitrilase 3.

ATZ84202    Z84202     5438bp    DNA      PLN      26-FEB-1998
    A.thaliana ORFb, ORFc and AtPK2324 gene.
    serine/threonine protein kinase; ORFb; AtPK2324; ORFc.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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