New Arabidopsis DNA 07-Mar-1998
AtDB Project
arabidopsis-seq at genome.stanford.edu
Sun Mar 8 13:37:09 EST 1998
====================== New DNA Sequences =======================
AB011474 AB011474 79899bp DNA PLN 04-MAR-1998
Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K2A18,
complete sequence.
HTG.
AB011475 AB011475 60583bp DNA PLN 04-MAR-1998
Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K9L2, complete
sequence.
HTG.
AB011476 AB011476 82033bp DNA PLN 04-MAR-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MDA7, complete
sequence.
HTG.
AB011477 AB011477 78181bp DNA PLN 04-MAR-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MHK7, complete
sequence.
HTG.
AB011478 AB011478 47460bp DNA PLN 04-MAR-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MKD10, complete
sequence.
HTG.
AB011479 AB011479 88356bp DNA PLN 04-MAR-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MNA5, complete
sequence.
HTG.
AB011480 AB011480 40548bp DNA PLN 04-MAR-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MPI7, complete
sequence.
HTG.
AB011481 AB011481 26624bp DNA PLN 04-MAR-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MSI17, complete
sequence.
HTG.
AB011482 AB011482 83478bp DNA PLN 04-MAR-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUA2, complete
sequence.
HTG.
AB011483 AB011483 77298bp DNA PLN 04-MAR-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MUF9, complete
sequence.
HTG.
AB011484 AB011484 13474bp DNA PLN 04-MAR-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXE10, complete
sequence.
HTG.
AB011485 AB011485 87210bp DNA PLN 04-MAR-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MXH1, complete
sequence.
HTG.
AC004238 AC004238 122770bp DNA HTG 01-MAR-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19I3'
genomic sequence near marker 've016'; HTGS phase 1, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC004255 AC004255 97675bp DNA HTG 04-MAR-1998
*** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
BAC T1F9; HTGS phase 1, 3 unordered pieces.
HTG; HTGS_PHASE1.
AF022909 AF022909 2912bp mRNA PLN 02-MAR-1998
Arabidopsis thaliana ClpC mRNA, nuclear gene encoding chloroplast
protein, complete cds.
ClpC.
AF036234 AF036234 2137bp mRNA PLN 02-MAR-1998
Arabidopsis thaliana vacuolar protein sorting homolog (VPS45) mRNA,
complete cds.
VPS45; vacuolar protein sorting homolog.
AF040631 AF040631 2239bp DNA PLN 03-MAR-1998
Arabidopsis thaliana IAA17/AXR3 protein (AXR3) gene, complete cds.
AXR3; IAA17/AXR3 protein.
AF040632 AF040632 2239bp DNA PLN 03-MAR-1998
Arabidopsis thaliana IAA17/AXR3-1 protein (AXR3) gene, complete cds.
AXR3; IAA17/AXR3-1 protein.
AF047031 AF047031 4918bp DNA PLN 03-MAR-1998
Arabidopsis thaliana IAA-amino acid hydrolase (ILL1 and ILL2) genes,
complete cds.
ILL1; IAA-amino acid hydrolase; ILL2.
ATAJ4119 AJ224119 1694bp mRNA PLN 25-FEB-1998
Arabidopsis thaliana mRNA AT-hook protein 2.
AHP2 gene; AT-hook protein 2; AHP2.
ATAJ4122 AJ224122 3059bp DNA PLN 27-FEB-1998
Arabidopsis thaliana BBFa gene.
BBFa gene; transcription factor; BBFa; DNA-binding protein.
ATM4E13 AL022023 80346bp DNA PLN 02-MAR-1998
Arabidopsis thaliana DNA chromosome 4, BAC clone M4E13 (ESSAII project).
M4E13.10; EF-1 alpha - like protein (fragment); M4E13.20; cyclophilin -
like protein; M4E13.30; actin depolymerizing factor - like protein;
M4E13.40; subtilisin proteinase - like; M4E13.50; MYB- like protein;
M4E13.60; L-ascorbate peroxidase; M4E13.70; beta-galactosidase - like
protein; M4E13.80; Rho1Ps homolog/ Rac-like protein; M4E13.90; protein
kinase - like; M4E13.100; putative protein; M4E13.110; WD-40 repeat
protein (MSI3); M4E13.120; M4E13.130; M4E13.140; catalase; M4E13.150;
plasma membrane intrinsic protein (SIMIP); M4E13.160; M4E13.170;
M4E13.180; M4E13.190; hypothetical protein.
==================== Updated DNA Sequences =====================
AC002423 AC002423 99363bp DNA HTG 27-FEB-1998
*** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
BAC T23E23; HTGS phase 2, 2 ordered pieces.
HTG; HTGS_PHASE2.
AC002521 AC002521 81004bp DNA HTG 28-FEB-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20F6'
genomic sequence near marker 'CIC11A04'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC004077 AC004077 81764bp DNA HTG 01-MAR-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T31E10'
genomic sequence near marker 've016'; HTGS phase 1, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC004138 AC004138 101428bp DNA HTG 04-MAR-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17M13'
genomic sequence near marker 'CIC11A04'; HTGS phase 1, 4 unordered
pieces.
HTG; HTGS_PHASE1.
ATAC002334 AC002334 93158bp DNA PLN 04-MAR-1998
Arabidopsis thaliana chromosome II BAC F25I18 genomic sequence, complete
sequence.
HTG; F25I18.1; F25I18.2; putative myosin heavy chain; F25I18.3; putative
dimethylaniline monooxygenase; F25I18.4; F25I18.5; putative
mitochondrial chaperonin HSP60 precursor; F25I18.6; F25I18.7; F25I18.8;
F25I18.9; putative receptor protein kinase; F25I18.10; putative
polygalacturonase; F25I18.11; putative 3-ketoacyl-CoA thiolase;
F25I18.12; tRNA-Met; F25I18.13; F25I18.14; similar to synaptobrevin;
F25I18.15; F25I18.16; putative cellulose synthase; F25I18.17; F25I18.18;
similar to disease resistance protein; F25I18.19; similar to jasmonate
inducible protein; F25I18.20; F25I18.21; F25I18.22; mitochondrial
F1-ATPase, gamma subunit; F25I18.23; F25I18.24; F25I18.25; F25I18.26.
ATAC003974 AC003974 92612bp DNA PLN 27-FEB-1998
Arabidopsis thaliana chromosome II BAC F24L7 genomic sequence, complete
sequence.
HTG; F24L7.1; putative cyclin g-associated kinase; F24L7.2; F24L7.3;
putative phosphate transporter; F24L7.4; F24L7.5; putative
beta-D-galactosidase; F24L7.6; putative protein kinase; F24L7.7;
putative ubiquitin conjugating enzyme; F24L7.8; putative ubiquitin
specific protease; F24L7.9; putative purple acid phosphatase; F24L7.10;
F24L7.11; F24L7.12; F24L7.13; tRNA-processing protein SEN3-like;
F24L7.14; putative cytochrome b5; F24L7.15; F24L7.16; F24L7.17;
F24L7.18; putative disease resistance protein (Cf-2.2); F24L7.19;
putative homeobox protein; F24L7.20; F24L7.21; F24L7.22.
ATPRL2RNA X82826 1672bp mRNA PLN 27-FEB-1998
A.thaliana PRL2 mRNA.
PRL2 gene; PRL2.
=========== Updated Sequence Features/Annotations =============
ATBBFA X97941 1476bp mRNA PLN 25-FEB-1998
A.thaliana mRNA for zinc finger protein, BBFa.
zinc finger protein; AtBBFa; Zn finger protein.
ATJ001148 AJ001148 3387bp DNA PLN 02-MAR-1998
Arabidopsis thaliana CBL1 gene.
cbl gene; CBL1.
ATKASIIIG Y11689 2640bp DNA PLN 02-MAR-1998
A.thaliana KAS III gene.
3-ketoacyl-acyl carrier protein synthase III; KAS III gene; KAS III.
ATNIT213 Y07648 13694bp DNA PLN 27-FEB-1998
A.thaliana nit2 gene, nit1 gene and nit3 gene.
nit1 gene; NIT2 gene; nit3 gene; nitrilase; nit2; nitrilase 2; nit1;
nitrilase 1; nit3; nitrilase 3.
ATZ84202 Z84202 5438bp DNA PLN 26-FEB-1998
A.thaliana ORFb, ORFc and AtPK2324 gene.
serine/threonine protein kinase; ORFb; AtPK2324; ORFc.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
More information about the Arab-gen
mailing list