New Arabidopsis DNA 14-Mar-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sun Mar 15 20:09:50 EST 1998


====================== New DNA Sequences =======================

AB000615    AB000615      903bp    DNA      PLN      07-MAR-1998
    Arabidopsis thaliana erd1 gene, partial cds.
    erd1; ERD1.

AB000875    AB000875     2110bp    mRNA     PLN      07-MAR-1998
    Arabidopsis thaliana mRNA for RD22BP1, complete cds.
    RD22BP1; rd22BP1.

AC004260    AC004260    84200bp    DNA      HTG      12-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     T14N5 genomic sequence; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004261    AC004261    96235bp    DNA      HTG      05-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3K9'
     genomic sequence near marker 'CIC11C08'; HTGS phase 1, 12 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004392    AC004392   116972bp    DNA      HTG      11-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC F8K4
     sequence; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC004393    AC004393    67063bp    DNA      HTG      11-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     T1F15 sequence; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004401    AC004401    96271bp    DNA      HTG      12-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F21P24'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AF007778    AF007778     1739bp    mRNA     PLN      10-MAR-1998
    Arabidopsis thaliana trehalose-6-phosphate phosphatase (AtTPPA) mRNA,
     complete cds.
    AtTPPA; trehalose-6-phosphate phosphatase.

AF007779    AF007779     1436bp    mRNA     PLN      10-MAR-1998
    Arabidopsis thaliana trehalose-6-phosphate phosphatase (AtTPPB) mRNA,
     complete cds.
    AtTPPB; trehalose-6-phosphate phosphatase.

AF033862    AF033862     6848bp    DNA      PLN      06-MAR-1998
    Arabidopsis thaliana Lon protease (LON) gene, complete cds.
    LON; Lon protease.

AF044216    AF044216     4818bp    DNA      PLN      06-MAR-1998
    Arabidopsis thaliana steroid 22-alpha-hydroxylase (DWF4) gene, complete
     cds.
    DWF4; steroid 22-alpha-hydroxylase.

AF044313    AF044313     2800bp    mRNA     PLN      06-MAR-1998
    Arabidopsis thaliana anion channel protein (CLC-a) mRNA, complete cds.
    CLC-a; anion channel protein.

AF051135    AF051135     1665bp    mRNA     PLN      12-MAR-1998
    Arabidopsis thaliana putative ubiquitin activating enzyme E1 (ECR1) mRNA,
     complete cds.
    ECR1; putative ubiquitin activating enzyme E1.

AF051338    AF051338     1016bp    mRNA     PLN      12-MAR-1998
    Arabidopsis thaliana xyloglucan endotransglycosylase related protein
     (TCH4) mRNA, complete cds.
    TCH4; xyloglucan endotransglycosylase related protein.

ATAJ3306    AJ223306      707bp    mRNA     PLN      11-MAR-1998
    Arabidopsis thaliana mRNA for Ycf32-related chloroplast thylakoid
     membrane protein.
    ycf32 gene; Ycf32-related protein; ycf32.

ATANR1      Z97057     1098bp    mRNA     PLN      11-MAR-1998
    Arabidopsis thaliana mRNA for MADS-box transcription factor.
    ANR1 gene; MADS-box; transcription factor; ANR1; ANR1 , MADS-box protein.

ATIMPA1     Y15224     1876bp    mRNA     PLN      11-MAR-1998
    Arabidopsis thaliana mRNA for importin alpha-like protein Impa1.
    Impa1 gene; importin alpha; Impa1; Importin alpha-like protein.

ATIMPA2     Y14615     1741bp    mRNA     PLN      10-MAR-1998
    Arabidopsis thaliana mRNA for importin alpha-like protein 2.
    Impa2 gene; importin alpha; Impa-2; Importin alpha-like protein.

ATIMPA3     Y15225     1887bp    mRNA     PLN      11-MAR-1998
    Arabidopsis thaliana mRNA for importin alpha-like protein Impa3.
    Impa3 gene; importin alpha; Impa3; Importin alpha-like protein.

ATIMPA4     Y14616     1778bp    mRNA     PLN      11-MAR-1998
    Arabidopsis thaliana partial mRNA for importin alpha-like protein 4.
    Impa4 gene; importin alpha; Impa-4; Importin alpha-like protein.

U96101      U96101      649bp    DNA      PLN      12-MAR-1998
    Arabidopsis lyrata internal transcribed spacer 1, 5.8S ribosomal RNA
     gene; and internal transcribed spacer 2, complete sequence.
    internal transcribed spacer 1; 5.8S ribosomal RNA; internal transcribed
     spacer 2.

U96102      U96102      649bp    DNA      PLN      12-MAR-1998
    Arabidopsis lyrata internal transcribed spacer 1, 5.8S ribosomal RNA
     gene; and internal transcribed spacer 2, complete sequence.
    internal transcribed spacer 1; 5.8S ribosomal RNA; internal transcribed
     spacer 2.

==================== Updated DNA Sequences =====================

AC002392    AC002392   113245bp    DNA      HTG      12-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20K24'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004077    AC004077    93107bp    DNA      HTG      09-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T31E10'
     genomic sequence near marker 've016'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC004146    AC004146   101982bp    DNA      HTG      05-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC F5A8
     genomic sequence; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004165    AC004165    84879bp    DNA      HTG      07-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T27E13'
     genomic sequence near marker 'm283'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC004238    AC004238   122763bp    DNA      HTG      06-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19I3'
     genomic sequence near marker 've016'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC004255    AC004255    97772bp    DNA      HTG      06-MAR-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T1F9; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC002521  AC002521    81004bp    DNA      PLN      10-MAR-1998
    Arabidopsis thaliana chromosome II BAC T20F6 genomic sequence, complete
     sequence.
    HTG; T20F6.1; basic blue protein, 5' partial; T20F6.2; T20F6.3; similar
     to retrotransposon polyprotein; T20F6.4; similar to myb transforming
     protein; T20F6.5; putative membrane protein; T20F6.6; putative protein
     kinase; T20F6.7; T20F6.8; putative Ser/Thr protein kinase; T20F6.9;
     T20F6.10; ubiquitin conjugating enzyme; T20F6.11; T20F6.12; T20F6.13;
     T20F6.14; putative pectate lyase; T20F6.15; T20F6.16; T20F6.17;
     T20F6.18.

ATHTRANSPO  L12220     3295bp    DNA      PLN      06-MAR-1998
    Arabidopsis thaliana DNA sequence, complete transposon.

=========== Updated Sequence Features/Annotations  =============

ATABI2      Y11840     1636bp    DNA      PLN      10-MAR-1998
    Arabidopsis thaliana ABI2 gene.
    ABI2 gene; ABI2.

ATBFRUCT4   Y11559     4207bp    DNA      PLN      11-MAR-1998
    A.thaliana bfruct4 gene.
    beta-fructosidase; bfruct4 gene; vacuolar invertase; bfruct4.

ATRADAIE    AJ001100     4844bp    DNA      PLN      10-MAR-1998
    Arabidopsis thaliana RAD51 gene, and Aie insertion element.
    insertion element; RAD51 gene; Rad51-like protein; rad51.

ATU76423    U76423     3471bp    DNA      PLN      06-MAR-1998
    Arabidopsis thaliana phosphoinositol-specific phospholipse C delta
     (ATHATPLC1G) gene, complete cds.
    ATHATPLC1G; phosphoinositol-specific phospholipase C delta.

S67399      S67399 U02555     2560bp    mRNA     PLN      17-FEB-1994
    CAS1=cycloartenol synthase [Arabidopsis thaliana, mRNA, 2560 nt].
    CAS1; cycloartenol synthase.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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