New Arabidopsis DNA 21-Mar-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Mar 21 22:30:57 EST 1998


====================== New DNA Sequences =======================

AB012047    AB012047     6114bp    DNA      PLN      17-MAR-1998
    Arabidopsis thaliana gene for sulfate transporter, complete cds,
     clone:AST56.
    sulfate transporter.

AB012048    AB012048     7012bp    DNA      PLN      17-MAR-1998
    Arabidopsis thaliana gene for sulfate transporter, complete cds,
     clone:AST12.
    sulfate transporter.

AC004411    AC004411   100487bp    DNA      HTG      13-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14M4'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 10 unordered
     pieces.
    HTG; HTGS_PHASE1.

AF037228    AF037228     4224bp    DNA      PLN      16-MAR-1998
    Arabidopsis thaliana transcription factor (MP) gene, complete cds.
    MP; transcription factor.

AF050463    AF050463     1051bp    mRNA     PLN      17-MAR-1998
    Arabidopsis thaliana zinc finger transcription factor (PEI1) mRNA,
     complete cds.
    PEI1; zinc finger transcription factor.

ART223508   AJ223508     3323bp    mRNA     PLN      03-MAR-1998
    Arabidopsis thaliana mRNA for Zwille protein.
    zwille gene; Zwille protein; zwille.

ATDNAMRP4   AJ002584     6923bp    DNA      PLN      03-MAR-1998
    Arabidopsis thaliana DNA for the glutathione-conjugate transporter
     AtMRP4.
    AtMRP4.

ATF1N20     AL022140   103270bp    DNA      PLN      14-MAR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F1N20 (ESSAII project).
    F1N20.10; putative protein (fragment); F1N20.20; hypothetical protein;
     F1N20.30; putative protein; F1N20.40; calcium-dependent protein kinase -
     like protein; F1N20.50; F1N20.60; peroxidase prxr1; F1N20.70; F1N20.80;
     symbiosis-related like protein; F1N20.90; PRH26 protein; F1N20.100;
     F1N20.110; pectinesterase like protein; F1N20.120; glycine-rich protein;
     F1N20.130; F1N20.140; LTR retrotransposon like protein; F1N20.150;
     aspartic proteinase like protein; F1N20.160; F1N20.170; F1N20.180;
     pectate lyase like protein; F1N20.190; F1N20.200; glucosidase like
     protein; F1N20.210; alcohol dehydrogenase like protein; F1N20.220;
     F1N20.230; serine/threonine protein kinase like protein.

ATF23E13    AL022141    94695bp    DNA      PLN      14-MAR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII project).
    F23E13.10; hypothetical protein (fragment); F23E13.20; putative ribosomal
     protein L8; F23E13.30; putative disease resistance protein; F23E13.40;
     F23E13.50; NAM like protein; F23E13.60; hypothetical protein; F23E13.70;
     putative receptor protein kinase; F23E13.80; putative protein;
     F23E13.90; hypothatical protein; F23E13.100; F23E13.110;
     ferulate-5-hydroxylase (FAH1); F23E13.120; putative glycine-rich cell
     wall protein; F23E13.130; F23E13.140; aldehyde dehydrogenase like
     protein; F23E13.150; F23E13.160; F23E13.170; F23E13.180; F23E13.190;
     purple acid phosphatase like protein; F23E13.200; beta-galactosidase
     like protein; F23E13.210; F23E13.220; cytochrome P450 like protein
     (fragment).

ATN16848    Y16848     6896bp    DNA      PLN      13-MAR-1998
    Arabidopsis thaliana LCADa gene and partial LCADb and LG127/30 gene.
    cinnamyl alcohol dehydrogenase-like; alpha subunit; beta subunit;
     LG27/30; LCADa; cinnamyl alcohol dehydrogenase-like protein, subunit a;
     LCADb; cinnamyl alcohol dehydrogenase-like protein, subunit b.

ATY13648    Y13648     1129bp    mRNA     PLN      03-MAR-1998
    Arabidopsis thaliana mRNA for GATA transcription factor 1.
    GATA-1 gene; transcription factor; AtGATA-1; homologous to GATA-binding
     transcription factors.

ATY13649    Y13649     1056bp    mRNA     PLN      03-MAR-1998
    Arabidopsis thaliana mRNA for GATA transcription factor 2.
    GATA-2 gene; transcription factor; AtGATA-2; homologous to GATA-binding
     transcription factors.

ATY13650    Y13650      917bp    mRNA     PLN      03-MAR-1998
    Arabidopsis thaliana mRNA for GATA transcription factor 3.
    GATA-3 gene; transcription factor; AtGATA-3.

ATY13651    Y13651      925bp    mRNA     PLN      03-MAR-1998
    Arabidopsis thaliana mRNA for GATA transcription factor 4.
    GATA-4 gene; transcription factor; AtGATA-4; homologous to GATA-binding
     transcription factors.

D88536      D88536     1178bp    mRNA     PLN      18-MAR-1998
    Arabidopsis thaliana mRNA for delta 9 desaturase, complete cds.
    ADS1; delta 9 desaturase.

D88537      D88537     1156bp    mRNA     PLN      18-MAR-1998
    Arabidopsis thaliana mRNA for delta 9 desaturase, complete cds.
    ADS2; delta 9 desaturase.

==================== Updated DNA Sequences =====================

AC002423    AC002423    99207bp    DNA      HTG      19-MAR-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T23E23; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC003672    AC003672   110257bp    DNA      HTG      17-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16B22'
     genomic sequence near marker 'm336'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC004005    AC004005   112779bp    DNA      HTG      18-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F6E13'
     genomic sequence near marker 'CIC10F02, CIC02E07'; HTGS phase 1, 2
     unordered pieces.
    HTG; HTGS_PHASE1.

AC004077    AC004077    93092bp    DNA      HTG      16-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T31E10'
     genomic sequence near marker 've016'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004138    AC004138   102317bp    DNA      HTG      16-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T17M13'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004165    AC004165    84303bp    DNA      HTG      14-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T27E13'
     genomic sequence near marker 'm283'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC004238    AC004238   110735bp    DNA      HTG      14-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19I3'
     genomic sequence near marker 've016'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

=========== Updated Sequence Features/Annotations  =============

AB010694    AB010694    68889bp    DNA      PLN      18-MAR-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K3K3, complete
     sequence.
    HTG.

AF015923    AF015923     1685bp    DNA      PLN      18-MAR-1998
    Arabidopsis thaliana NAD-dependent isocitrate dehydrogenase subunit II
     (IDH2) gene, partial cds.
    IDH2; NAD-dependent isocitrate dehydrogenase subunit II.

ATH14       D85416     2071bp    mRNA     PLN      17-MAR-1998
    Arabidopsis thaliana mRNA for sulfate transporter, complete cds.
    sulfate transporter.

ATNLM1      Y07625     1011bp    mRNA     PLN      12-MAR-1998
    A.thaliana mRNA for NLM1 protein.
    aquaporin; NLM1 protein; NLM1 protein (NodLikeMip1).

ATU81993    U81993     1417bp    mRNA     PLN      18-MAR-1998
    Arabidopsis thaliana NAD+ dependent isocitrate dehydrogenase subunit 1
     (IDH1) mRNA, complete cds.
    IDH1; NAD+ dependent isocitrate dehydrogenase subunit 1.

ATU81994    U81994     1451bp    mRNA     PLN      18-MAR-1998
    Arabidopsis thaliana NAD+ dependent isocitrate dehydrogenase subunit 2
     (IDH2) mRNA, complete cds.
    IDH2; NAD+ dependent isocitrate dehydrogenase subunit 2.

ATU82203    U82203     1552bp    DNA      PLN      18-MAR-1998
    Arabidopsis thaliana IDH-I gene, promoter region and partial cds.
    IDH-I.

ATU95142    U95142     2283bp    DNA      PLN      17-MAR-1998
    Arabidopsis thaliana putative G-protein-coupled receptor (GCR1) gene,
     complete cds.
    GCR1; putative G-protein-coupled receptor.

ATU95143    U95143     1470bp    mRNA     PLN      17-MAR-1998
    Arabidopsis thaliana putative G-protein-coupled receptor (GCR1) mRNA,
     complete cds.
    GCR1; putative G-protein-coupled receptor.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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