New Arabidopsis DNA 28-Mar-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Mar 28 16:38:21 EST 1998


====================== New DNA Sequences =======================

AB008854    AB008854     1765bp    mRNA     PLN      24-MAR-1998
    Arabidopsis thaliana mRNA for 3-ketoacyl-CoA thiolase, complete cds.
    3-ketoacyl-CoA thiolase.

AB008855    AB008855     3156bp    DNA      PLN      24-MAR-1998
    Arabidopsis thaliana PED1 gene for 3-ketoacyl-CoA thiolase, complete cds.
    3-ketoacyl-CoA thiolase; PED1.

AB008856    AB008856     3157bp    DNA      PLN      24-MAR-1998
    Arabidopsis thaliana gene for mutated 3-ketoacyl-CoA thiolase, complete
     cds.
    mutated 3-ketoacyl-CoA thiolase; ped1.

AC004450    AC004450    98183bp    DNA      HTG      20-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14B2'
     genomic sequence near marker 'CIC10F02'; HTGS phase 1, 9 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004473    AC004473   119391bp    DNA      HTG      25-MAR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     T13D8 sequence; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AF037229    AF037229     3106bp    mRNA     PLN      25-MAR-1998
    Arabidopsis thaliana transcription factor (MP) mRNA, complete cds.
    MP; transcription factor.

AF051853    AF051853     1011bp    mRNA     PLN      24-MAR-1998
    Arabidopsis thaliana t-SNARE SED5 (AtSED5) mRNA, complete cds.
    AtSED5; t-SNARE SED5.

AF053365    AF053365     1601bp    mRNA     PLN      26-MAR-1998
    Arabidopsis thaliana type II CPD photolyase PHR1 (PHR1) mRNA, complete
     cds.
    PHR1; type II CPD photolyase PHR1.

ATAJ3135    AJ003135     2556bp    DNA      PLN      23-MAR-1998
    Arabidopsis thaliana PGA5 gene, complete CDS.
    PGA5 gene; polygalacturonase; PGA5.

ATF1C12     AL022224   111945bp    DNA      PLN      20-MAR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F1C12 (ESSAII project).
    F1C12.10; hypothetical protein; F1C12.20; F1C12.30; vacuolar sorting
     receptor-like protein; F1C12.40; F1C12.50; F1C12.60; leucine rich
     repeat-like protein; F1C12.70; putative protein; F1C12.80; Glu-rich
     protein; F1C12.90; F1C12.100; retrotransposon like protein (fragment);
     F1C12.110; F1C12.120; terpene cyclase like protein; F1C12.130; cadinene
     synthase like protein; F1C12.140; F1C12.150; F1C12.160; cytochrome p450
     like protein; F1C12.170; F1C12.180; endomembrane-associated protein;
     F1C12.190; CLV1 receptor kinase like protein; F1C12.195; F1C12.200;
     F1C12.210; F1C12.220.

ATF6I18     AL022198   122322bp    DNA      PLN      18-MAR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSAII project).
    F6I18.10; putative protein; F6I18.20; F6I18.30; F6I18.40; F6I18.50;
     hypothetical protein; F6I18.60; F6I18.70; F6I18.80; F6I18.90; putative
     calmodulin-binding protein; F6I18.100; F6I18.110; F6I18.120; F6I18.130;
     putative protein kinase; F6I18.140; chloroplast omega-6 fatty acid
     desaturase (fad6); F6I18.150; F6I18.160; F6I18.170; leucyl
     aminopeptidase - like protein; F6I18.180; leucyl aminopeptidase - like
     protein (partial); F6I18.190; F6I18.200; F6I18.210; F6I18.220;
     F6I18.230; F6I18.240; F6I18.250; F6I18.260; F6I18.270; puative protein;
     F6I18.280; SERINE CARBOXYPEPTIDASE II - like protein.

ATM3E9      AL022223    80679bp    DNA      PLN      20-MAR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone M3E9 (ESSAII project).
    M3E9.10; putative protein; M3E9.20; M3E9.30; receptor protein kinase -
     like protein; M3E9.40; fructose-bisphosphate aldolase - like protein;
     M3E9.50; fructose-bisphosphate aldolase; M3E9.60; putative uracil
     phosphoribosyl transferase; M3E9.70; M3E9.80; hypothetical protein;
     M3E9.90; M3E9.100; M3E9.110; M3E9.120; M3E9.130; M3E9.140; M3E9.150;
     M3E9.160; M3E9.170; M3E9.180; pyruvate kinase like protein; M3E9.190;
     M3E9.200.

ATM7J2      AL022197    80387bp    DNA      PLN      18-MAR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone M7J2 (ESSAII project).
    M7J2.10; putative protein; M7J2.20; hypothetical protein; M7J2.30;
     M7J2.40; actin depolymerizing factor - like protein; M7J2.50; M7J2.60;
     M7J2.70; myb - like protein; M7J2.80; M7J2.90; putative DNA mismatch
     repair protein; M7J2.100; putative homeodomain-protein; M7J2.110;
     M7J2.120; M7J2.130; splicing factor At-SRp40; M7J2.140; transcriptional
     activator CBF1; M7J2.150; transcriptional activator CBF1 - like protein;
     M7J2.160; M7J2.170; M7J2.180; M7J2.190; M7J2.200.

ATMRPPROT   Y11250     4992bp    mRNA     PLN      19-MAR-1998
    Arabidopsis thaliana mRNA for putative MRP protein.
    mrp gene; MRP protein; mrp; multi resistance protein.

==================== Updated DNA Sequences =====================

AC004255    AC004255    97788bp    DNA      PLN      24-MAR-1998
    Genomic sequence for Arabidopsis thaliana BAC T1F9, complete sequence.
    HTG.

ATAC003680  AC003680    91854bp    DNA      PLN      20-MAR-1998
    Arabidopsis thaliana chromosome II BAC F17K2 genomic sequence, complete
     sequence.
    HTG; F17K2.1; F17K2.2; putative Ser/Thr kinase; F17K2.3; F17K2.4;
     putative cytochrome P-450; F17K2.5; F17K2.6; F17K2.7; CDC4 like protein;
     F17K2.8; putative 7-ethoxycoumarin O-deethylase; F17K2.9; F17K2.10;
     F17K2.11; F17K2.12; putative receptor protein kinase; F17K2.13;
     F17K2.14; F17K2.15; F17K2.16; F17K2.17; putative sin3 associated
     polypeptide (SAP18); F17K2.18; MADS box protein AGL6; F17K2.19; MADS box
     protein AGL20; F17K2.20; F17K2.21; putative DNA binding protein;
     F17K2.22; F17K2.23; F17K2.24; putative ribosomal protein S27; F17K2.25;
     F17K2.26.

=========== Updated Sequence Features/Annotations  =============

AT12089     Y12089     2135bp    DNA      PLN      19-MAR-1998
    A.thaliana Per1 gene.
    Per1 gene; peroxiredoxin; thiol-specific antioxidant; Per1.

ATF21O9     AL021749    93695bp    DNA      PLN      20-MAR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F21O9 (ESSAII project).
    F21O9.10; hypothetical protein; F21O9.20; F21O9.40; receptor protein
     kinase like protein; F21O9.30; copper-binding protein-like; F21O9.50;
     F21O9.70; extensin-like protein; F21O9.60; ADP, ATP carrier-like
     protein; F21O9.80; protein phosphatase 2C-like protein; F21O9.90;
     F21O9.100; tyrosine transaminase-like protein; F21O9.110; F21O9.120;
     putative protein; F21O9.130; SOF1 protein-like protein; F21O9.140;
     F21O9.150; F21O9.160; heat-shock protein; F21O9.170; F21O9.180;
     receptor-like protein kinase 5 precursor (RLK5); F21O9.190; predicted
     protein; F21O9.200; prohibitin-like protein; F21O9.210; 12S cruciferin
     seed storage protein; F21O9.220; NAM / CUC2 -like protein; F21O9.230.

ATU67679    U67679      379bp    DNA      PLN      25-MAR-1998
    Arabidopsis thaliana transfer RNA-Lys gene, complete sequence.
    transfer RNA-Lys.

ATU67680    U67680      236bp    DNA      PLN      25-MAR-1998
    Arabidopsis thaliana transfer RNA-Lys gene, complete sequence.
    transfer RNA-Lys.

ATU67681    U67681      278bp    DNA      PLN      25-MAR-1998
    Arabidopsis thaliana transfer RNA-Lys gene, complete sequence.
    transfer RNA-Lys.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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