New Arabidopsis DNA 02-May-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat May 2 12:32:22 EST 1998


====================== New DNA Sequences =======================

AC004625    AC004625    52117bp    DNA      HTG      30-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T26J13'
     genomic sequence near marker 'CIC11C08'; HTGS phase 1, 6 unordered
     pieces.
    HTG; HTGS_PHASE1.

AF017640    AF017640      909bp    mRNA     PLN      30-APR-1998
    Arabidopsis thaliana nucleoside diphosphate kinase type 2 (NDPK2) gene,
     complete cds.
    NDPK2; nucleoside diphosphate kinase type 2.

AF059579    AF059579      348bp    DNA      PLN      30-APR-1998
    Arabidopsis thaliana ecs1 pseudogene, ecs1-2 allele, partial sequence.
    ecs1.

AF059581    AF059581     1802bp    mRNA     PLN      26-APR-1998
    Arabidopsis thaliana S-adenosyl-L-homocysteine hydrolase (SAHH) mRNA,
     complete cds.
    SAHH; S-adenosyl-L-homocysteine hydrolase.

AF060094    AF060094      200bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana glutamate decarboxylase (GAD1) gene, 3' UTR.
    GAD1.

AF060485    AF060485     2309bp    mRNA     PLN      28-APR-1998
    Arabidopsis thaliana MEDEA (MEA) mRNA, complete cds.
    MEA; MEDEA.

ATGELSOLI   Y12782     3749bp    mRNA     PLN      27-APR-1998
    Arabidopsis thaliana mRNA for putative villin.
    actin binding protein; villin; putative villin.

ATH5671     AJ005671      565bp    mRNA     PLN      24-APR-1998
    Arabidopsis thaliana mRNA for cytochrome b6f complex subunit.
    cytochrome b6/f complex; pepM gene; subunit; petM; cytochrome b6f complex
     subunit.

ATH5687     AJ005687     3641bp    DNA      PLN      27-APR-1998
    Arabidopsis thaliana cda1 gene.
    cda1 gene; cytidine deaminase; cda1.

ATH5811     AJ005811     1234bp    mRNA     PLN      29-APR-1998
    Arabidopsis thaliana mRNA for cytidine deaminase.
    cda2 gene; cytidine deaminase; cda2.

ATH5813     AJ005813     1846bp    mRNA     PLN      29-APR-1998
    Arabidopsis thaliana mRNA for neoxanthin cleavage enzyme.
    nc1 gene; neoxanthin cleavage enzyme; nc1.

ATT4L20     AL023094   124679bp    DNA      PLN      29-APR-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone T4L20 (ESSAII project).
    T4L20.10; putative protein; T4L20.20; putative serine/threonine protein
     kinase; T4L20.30; Nonclathrin coat protein gamma - like protein;
     T4L20.40; GTP binding protein beta subunit; T4L20.50; Skp1p - like
     protein; T4L20.60; T4L20.70; putative cyclase associated protein CAP;
     T4L20.80; T4L20.90; putative ketoacyl-CoA synthase; T4L20.100; fatty
     acid elongase 1; T4L20.110; T4L20.120; isoflavone reductase - like
     protein; T4L20.130; hypothetical protein; T4L20.140; T4L20.150;
     dihydrofolate reductase-thymidylate synthase; T4L20.160; T4L20.170; bZIP
     transcription factor ATB2; T4L20.180; T4L20.190; Homeodomain - like
     protein; T4L20.200; putative ribosomal protein S16; T4L20.210;
     T4L20.220; farnesyl-diphosphate farnesyltransferase; T4L20.230; putative
     squalene synthase; T4L20.240; T4L20.250; Putative S-phase-specific
     ribosomal protein; T4L20.260; GATA transcription factor 3; T4L20.270;
     T4L20.280; T4L20.290; arginine decarboxylase SPE2; T4L20.300; vacuolar
     H+-transporting ATPase 16K chain; T4L20.310; T4L20.320;
     amidophosphoribosyltransferase 2 precursor; T4L20.330; T4L20.340;
     putative auxin-regulated protein.

ATY16327    Y16327     2547bp    mRNA     PLN      29-APR-1998
    Arabidopsis thaliana mRNA for putative cyclic nucleotide-regulated ion
     channel, cngc1.
    cngc1 gene; cyclic nucleotide-regulated ion channel; cngc1; putative
     cyclic nucleotide-regulated ion channel.

ATY16328    Y16328     2398bp    DNA      PLN      29-APR-1998
    Arabidopsis thaliana mRNA for putative cyclic nucleotide-regulated ion
     channel, cngc2.
    cngc2 gene; cyclic nucleotide-regulated ion channel; cngc2; putative
     cyclic nucleotide-regulated ion channel.

==================== Updated DNA Sequences =====================

AC004165    AC004165    83775bp    DNA      HTG      28-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T27E13'
     genomic sequence near marker 'm283'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004401    AC004401    96421bp    DNA      HTG      28-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F21P24'
     genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004411    AC004411   108982bp    DNA      HTG      30-APR-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14M4'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 5 unordered
     pieces.
    HTG; HTGS_PHASE1.

=========== Updated Sequence Features/Annotations  =============

AB006054    AB006054     1800bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Aa-0.
    acidic endochitinase.

AB006055    AB006055     1800bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Bs-1.
    acidic endochitinase.

AB006056    AB006056     1800bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Gr-1.
    acidic endochitinase.

AB006057    AB006057     1800bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Hiroshima.
    acidic endochitinase.

AB006058    AB006058     1800bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochiotinase, complete cds,
     isolate:Es-0.
    acidic endochitinase.

AB006059    AB006059     1800bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Al-0.
    acidic endochitinase.

AB006060    AB006060     1801bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Chi-0.
    acidic endochitinase.

AB006061    AB006061     1779bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Bl-1.
    acidic endochitinase.

AB006062    AB006062     1800bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Mt-0.
    acidic endochitinase.

AB006063    AB006063     1799bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Shokei.
    acidic endochitinase.

AB006064    AB006064     1801bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Yo-0.
    acidic endochitinase.

AB006065    AB006065     1792bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Bla-10.
    acidic endochitinase.

AB006066    AB006066     1791bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Kn-0.
    acidic endochitinase.

AB006067    AB006067     1790bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Ci-0.
    acidic endochitinase.

AB006068    AB006068     1782bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Ita-0.
    acidic endochiotinase; acidic endochitinase.

AB006069    AB006069     1781bp    DNA      PLN      28-APR-1998
    Arabidopsis thaliana gene for acidic endochitinase, complete cds,
     isolate:Pog-0.
    acidic endochitinase.

ATAATP2     X94626     2139bp    mRNA     PLN      29-APR-1998
    A.thaliana mRNA for AATP2.
    AATP2 protein; adenylate translocator; AATP2.

ATHERD1     D17582     3125bp    mRNA     PLN      29-APR-1998
    Arabidopsis thaliana mRNA for ERD1 protein, complete cds.
    ATP-binding protein; ATP-dependent Clp protease regulatory subunit; ERD1
     protein; erd1; ERD1 protein.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/






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