New Arabidopsis DNA 16-May-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon May 18 11:18:00 EST 1998


====================== New DNA Sequences =======================

AB013387    AB013387    31309bp    DNA      PLN      12-MAY-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K18G13,
     complete sequence.
    HTG.

AB013388    AB013388    73428bp    DNA      PLN      12-MAY-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19E1,
     complete sequence.
    HTG.

AB013389    AB013389    83511bp    DNA      PLN      12-MAY-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K1F13,
     complete sequence.
    HTG.

AB013390    AB013390    51860bp    DNA      PLN      12-MAY-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K9I9, complete
     sequence.
    HTG.

AB013391    AB013391    51737bp    DNA      PLN      12-MAY-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MFO20, complete
     sequence.
    HTG.

AB013392    AB013392    84129bp    DNA      PLN      12-MAY-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MIK19, complete
     sequence.
    HTG.

AB013393    AB013393    65325bp    DNA      PLN      12-MAY-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MJE4, complete
     sequence.
    HTG.

AB013394    AB013394    85661bp    DNA      PLN      12-MAY-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MQD22, complete
     sequence.
    HTG.

AB013395    AB013395    86064bp    DNA      PLN      12-MAY-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MQN23, complete
     sequence.
    HTG.

AB013396    AB013396    79676bp    DNA      PLN      12-MAY-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MTI20, complete
     sequence.
    HTG.

AC004680    AC004680    98004bp    DNA      HTG      15-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F23F1'
     genomic sequence near marker 'm283'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC004681    AC004681    79765bp    DNA      HTG      12-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T26B15'
     genomic sequence near marker 'TEn5'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC004683    AC004683    96200bp    DNA      HTG      13-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T19C21'
     genomic sequence near marker 've018'; HTGS phase 1, 11 unordered pieces.
    HTG; HTGS_PHASE1.

AC004684    AC004684   102902bp    DNA      HTG      14-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13M22'
     genomic sequence near marker 've018'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AF034573    AF034573     1748bp    mRNA     PLN      15-MAY-1998
    Arabidopsis thaliana endo-1,4-beta glucanase (CEL2) mRNA, complete cds.
    CEL2; endo-1,4-beta glucanase.

AF061570    AF061570     1320bp    mRNA     PLN      10-MAY-1998
    Arabidopsis thaliana potassium channel beta subunit homolog (KV-beta1)
     mRNA, complete cds.
    KV-beta1; potassium channel beta subunit homolog.

AF062640    AF062640     1212bp    mRNA     PLN      13-MAY-1998
    Arabidopsis thaliana metalloproteinase mRNA, complete cds.
    metalloproteinase.

==================== Updated DNA Sequences =====================

AC003058    AC003058    97495bp    DNA      HTG      12-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27F23'
     genomic sequence near marker 'CIC06E08'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC003096  AC003096    69817bp    DNA      PLN      13-MAY-1998
    Arabidopsis thaliana chromosome II BAC T29F13 genomic sequence, complete
     sequence.
    HTG; T29F13.1; T29F13.2; fatty acid hydroxylase, FAH1; T29F13.3;
     T29F13.4; T29F13.5; putative protein phosphatase 2C; T29F13.6; T29F13.7;
     similar to rapb transcription factor; T29F13.8; homeobox protein,
     ATHB-14; T29F13.9; similar to proline-rich protein; T29F13.10;
     T29F13.11; T29F13.12; bZIP-like protein; T29F13.13; multidrug
     resistance-associated protein, AtMRP2.

AC003672    AC003672   111575bp    DNA      HTG      13-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16B22'
     genomic sequence near marker 'm336'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC004135    AC004135    73805bp    DNA      PLN      15-MAY-1998
    Genomic sequence for Arabidopsis thaliana BAC T17H7, complete sequence.
    HTG.

AC004136    AC004136   107881bp    DNA      HTG      11-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T8K22'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004482    AC004482    92049bp    DNA      HTG      15-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27L4'
     genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004669    AC004669    96375bp    DNA      HTG      15-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F7F1'
     genomic sequence near marker 'm283'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC003096  AC003096    69817bp    DNA      PLN      13-MAY-1998
    Arabidopsis thaliana chromosome II BAC T29F13 genomic sequence, complete
     sequence.
    HTG; T29F13.1; T29F13.2; fatty acid hydroxylase, FAH1; T29F13.3;
     T29F13.4; T29F13.5; putative protein phosphatase 2C; T29F13.6; T29F13.7;
     similar to rapb transcription factor; T29F13.8; homeobox protein,
     ATHB-14; T29F13.9; similar to proline-rich protein; T29F13.10;
     T29F13.11; T29F13.12; bZIP-like protein; T29F13.13; multidrug
     resistance-associated protein, AtMRP2.

ATAC004077  AC004077    93060bp    DNA      PLN      12-MAY-1998
    Arabidopsis thaliana chromosome II BAC T31E10 genomic sequence, complete
     sequence.
    HTG; T31E10.30; multidrug resistance-associated protein, 3' partial;
     T31E10.1; putative protein serine/threonine kinase; T31E10.2; T31E10.3;
     T31E10.4; T31E10.5; T31E10.6; T31E10.7; putative pyruvate dehydrogenase
     complex E1 beta subunit; T31E10.8; T31E10.9; T31E10.10; putative end13
     protein; T31E10.11; putative GA4 protein; T31E10.12; T31E10.13;
     T31E10.14; mitochondrial ribosomal protein S14; T31E10.15; T31E10.16;
     putative cytochrome P450 protein; T31E10.17; putative cytochrome p450
     protein; T31E10.18; putative ribosomal protein L18A; T31E10.19; putative
     urease accessory protein; T31E10.20; T31E10.21; putative HMG protein;
     T31E10.22; MADS Box protein AGL29; T31E10.23; putative photosystem II
     type I chlorophyll a/b binding protein.; T31E10.24; photosystem II type
     I chlorophyll a/b binding protein; T31E10.25; T31E10.26; T31E10.27;
     nodulin-26-like protein; T31E10.28; T31E10.29; putative selenium-binding
     protein.

ATAC004521  AC004521   118327bp    DNA      PLN      12-MAY-1998
    Arabidopsis thaliana chromosome II BAC F4I1 genomic sequence, complete
     sequence.
    HTG; F4I1.1; F4I1.2; putative carboxyl-terminal peptidase; F4I1.3;
     F4I1.4; F4I1.5; putative proteinase; F4I1.6; F4I1.7; F4I1.8; F4I1.9;
     F4I1.10; F4I1.11; F4I1.12; F4I1.13; tRNA-Ser; F4I1.14; F4I1.15; F4I1.16;
     citrate synthetase; F4I1.17; F4I1.18; F4I1.19; F4I1.20; F4I1.21;
     F4I1.22; F4I1.23; F4I1.24; F4I1.25; F4I1.26; putative beta-glucosidase;
     F4I1.27; F4I1.28; F4I1.29; F4I1.30; F4I1.31; axi 1-like protein;
     F4I1.32; F4I1.33; putative heme A:farnesyltransferase; F4I1.34; F4I1.35;
     putative phosphoribosyl pyrophosphate synthetase; F4I1.36; putative
     cellulase; F4I1.37; F4I1.38; putative cellulase, 5' partial.

=========== Updated Sequence Features/Annotations  =============

ART223508   AJ223508     3323bp    mRNA     PLN      11-MAY-1998
    Arabidopsis thaliana mRNA for Zwille protein.
    zwille gene; Zwille protein; zwille.

ATHERD1     D17582     3125bp    mRNA     PLN      12-MAY-1998
    Arabidopsis thaliana mRNA for ERD1 protein, complete cds.
    ATP-binding protein; ATP-dependent Clp protease regulatory subunit; ERD1
     protein; erd1; ERD1 protein.

ATY16327    Y16327     2547bp    mRNA     PLN      08-MAY-1998
    Arabidopsis thaliana mRNA for putative cyclic nucleotide-regulated ion
     channel, cngc1.
    cngc1 gene; cyclic nucleotide-regulated ion channel; cngc1; putative
     cyclic nucleotide-regulated ion channel.

ATY16328    Y16328     2398bp    DNA      PLN      08-MAY-1998
    Arabidopsis thaliana mRNA for putative cyclic nucleotide-regulated ion
     channel, cngc2.
    cngc2 gene; cyclic nucleotide-regulated ion channel; cngc2; putative
     cyclic nucleotide-regulated ion channel.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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