New Arabidopsis DNA 23-May-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon May 25 11:10:46 EST 1998


====================== New DNA Sequences =======================

AB010259    AB010259     1924bp    mRNA     PLN      21-MAY-1998
    Arabidopsis thaliana mRNA for DRH1, complete cds.
    DRH1.

AC004697    AC004697   125439bp    DNA      HTG      20-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16B24'
     genomic sequence near marker 'CIC10A06'; HTGS phase 1, 9 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004705    AC004705    97712bp    DNA      HTG      20-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F26C24'
     genomic sequence near marker 'mi398'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC004708    AC004708   167234bp    DNA      PLN      21-MAY-1998
    CIC5B11.1  check: 4870  from: 1  to: 167234, complete sequence.
    HTG.

AF038505    AF038505     1618bp    mRNA     PLN      20-MAY-1998
    Arabidopsis thaliana dihydrolipoylacyltransferase subunit of the
     branched-chain alpha-keto acid dehydrogenase complex (LTA1) mRNA,
     complete cds.
    LTA1; dihydrolipoylacyltransferase subunit of the branched-chain
     alpha-keto acid dehydrogenase complex.

AF060248    AF060248     7895bp    DNA      PLN      18-MAY-1998
    Arabidopsis thaliana 178 product (178) gene, complete cds; beta-9 tubulin
     (TUB9) gene, partial cds; and unknown gene.
    178; 178 product; TUB9; beta-9 tubulin.

AF062485    AF062485     3444bp    mRNA     PLN      18-MAY-1998
    Arabidopsis thaliana cellulose synthase mRNA, partial cds.
    cellulose synthase.

AF063306    AF063306     1828bp    DNA      PLN      20-MAY-1998
    Arabidopsis thaliana putative G-protein-coupled receptor (GCR1) gene,
     promoter and exon 1 sequence, partial cds.
    GCR1; putative G-protein-coupled receptor.

AF064542    AF064542     1143bp    mRNA     PLN      21-MAY-1998
    Arabidopsis thaliana protein farnesyltransferase subunit A (FTA) mRNA,
     complete cds.
    FTA; protein farnesyltransferase subunit A.

ATU66462    U66462     6815bp    DNA      PLN      22-MAY-1998
    Arabidopsis thaliana Myb transcription factor homolog (ATR1) gene,
     complete cds, receptor-like protein kinase (RLK1) gene, partial cds.
    ATR1; RLK1; receptor-like protein kinase.

ATY12497    Y12497     3247bp    DNA      PLN      19-MAY-1998
    A.thaliana regulatory DNA sequence, promoter trapped pGOM553#25.1.
    beta-glucuronidase; GUS gene; promoter; GUS.

==================== Updated DNA Sequences =====================

AC004005    AC004005   112779bp    DNA      HTG      19-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F6E13'
     genomic sequence near marker 'CIC10F02, CIC02E07'; HTGS phase 1, 2
     unordered pieces.
    HTG; HTGS_PHASE1.

AC004165    AC004165    83796bp    DNA      HTG      19-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T27E13'
     genomic sequence near marker 'm283'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004401    AC004401    94038bp    DNA      HTG      20-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F21P24'
     genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004483    AC004483    85508bp    DNA      HTG      18-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T12J2'
     genomic sequence near marker 'mi421'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004625    AC004625    49760bp    DNA      HTG      21-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T26J13'
     genomic sequence near marker 'CIC11C08'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004681    AC004681    78500bp    DNA      HTG      21-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T26B15'
     genomic sequence near marker 'TEn5'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC004684    AC004684   102090bp    DNA      HTG      20-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13M22'
     genomic sequence near marker 've018'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC003058  AC003058    97495bp    DNA      PLN      16-MAY-1998
    Arabidopsis thaliana chromosome II BAC F27F23 genomic sequence, complete
     sequence.
    HTG; F27F23.1; putative receptor protein kinase; F27F23.2; F27F23.3;
     F27F23.4; F27F23.5; Mg-chelatase subunit D-like protein; F27F23.6;
     F27F23.7; F27F23.8; salt inducible protein-like; F27F23.9; F27F23.10;
     F27F23.11; putative 18.5 KDa class I heat shock protein; F27F23.12;
     F27F23.13; F27F23.14; F27F23.15; F27F23.16; F27F23.17; F27F23.18;
     putative RNA-binding protein; F27F23.19; F27F23.20; putative protein
     kinase; F27F23.21; putative receptor-like protein kinase; F27F23.22;
     F27F23.23; F27F23.24; putative beta-1,3-endoglucanase; F27F23.25;
     F27F23.26; putative acyl-CoA:cholesterol acyltransferase; F27F23.27.

=========== Updated Sequence Features/Annotations  =============

ATA224957   AJ224957     4081bp    DNA      PLN      19-MAY-1998
    Arabidopsis thaliana RGAL gene.
    RGAL gene; SCR2; RGA-like.

ATDNALIG    X97924     2644bp    mRNA     PLN      19-MAY-1998
    A.thaliana mRNA for DNA ligase.
    DNA ligase.

ATDNAMRP4   AJ002584     6923bp    DNA      PLN      19-MAY-1998
    Arabidopsis thaliana DNA for the glutathione-conjugate transporter
     AtMRP4.
    AtMRP4.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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