New Arabidopsis DNA 31-Oct-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sun Nov 1 18:07:58 EST 1998


====================== New DNA Sequences =======================

AB003139    AB003139     1695bp    DNA      PLN      28-OCT-1998
    Arabidopsis thaliana transgenic line A DNA, 5'-junction region.
    phosphinothricin acetyltransferase; bar.

AB003140    AB003140     2256bp    DNA      PLN      28-OCT-1998
    Arabidopsis thaliana transgenic line A DNA, 3'-junction region.

AB003141    AB003141     4475bp    DNA      PLN      28-OCT-1998
    Arabidopsis thaliana transgenic line B DNA.

AB003142    AB003142     5984bp    DNA      PLN      28-OCT-1998
    Arabidopsis thaliana transgenic line C DNA.
    hygromycin phosphotransferase; hpt.

AC005861    AC005861   106510bp    DNA      HTG      24-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F23B24'
     genomic sequence near marker 'mi473'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC005882    AC005882    87556bp    DNA      HTG      28-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     T13M11 genomic sequence; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AF061401    AF061401     2195bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar Blanes/Gerona/N970 CAULIFLOWER (CAL) gene,
     partial cds.
    CAL; CAULIFLOWER.

AF061402    AF061402     2194bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar Col-0 CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF061403    AF061403     2194bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar FIR CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF061404    AF061404     2193bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar Kas-0 CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF061405    AF061405     2196bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar NL2 CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF061406    AF061406     2199bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar Co-1 CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF061407    AF061407     2194bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar Ch-0 CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF061408    AF061408     2196bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar Bu-0 CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF061409    AF061409     2196bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar Bs-0 CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF061410    AF061410     2198bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar Bu-2 CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF061411    AF061411     2196bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar Nd-0 CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF061412    AF061412     2195bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar Li-3 CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF061413    AF061413     2194bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar Kent-2 CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF061414    AF061414     2196bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar Li-8 CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF061415    AF061415     2195bp    DNA      PLN      25-OCT-1998
    Arabidopsis thaliana cultivar BR1 CAULIFLOWER (CAL) gene, partial cds.
    CAL; CAULIFLOWER.

AF064064    AF064064     2240bp    DNA      PLN      27-OCT-1998
    Arabidopsis thaliana cultivar Columbia flavanone 3-hydroxylase (F3H)
     gene, complete cds.
    F3H; flavanone 3-hydroxylase.

AF064065    AF064065     2240bp    DNA      PLN      27-OCT-1998
    Arabidopsis thaliana cultivar Landsberg erecta mutant flavanone
     3-hydroxylase (f3h) gene, f3h-1(tt6) allele, complete cds.
    f3h; flavanone 3-hydroxylase; mutant flavanone 3-hydroxylase.

AF078683    AF078683      673bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHA1a mRNA, complete cds.
    RING-H2 finger protein RHA1a.

AF078821    AF078821      741bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHA1b mRNA, complete cds.
    RING-H2 finger protein RHA1b.

AF078822    AF078822      781bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHA2a mRNA, complete cds.
    RING-H2 finger protein RHA2a.

AF078823    AF078823      783bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHA2b mRNA, complete cds.
    RING-H2 finger protein RHA2b.

AF078824    AF078824      826bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHA3a mRNA, complete cds.
    RING-H2 finger protein RHA3a.

AF078825    AF078825      864bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHA3b mRNA, complete cds.
    RING-H2 finger protein RHA3b.

AF079100    AF079100     2111bp    mRNA     PLN      29-OCT-1998
    Arabidopsis thaliana arginine-tRNA-protein transferase 1 (Ate1) mRNA,
     complete cds.
    Ate1; arginine-tRNA-protein transferase 1.

AF079178    AF079178      348bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHA4a mRNA, partial cds.
    RING-H2 finger protein RHA4a.

AF079179    AF079179      998bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHB1a mRNA, complete cds.
    RING-H2 finger protein RHB1a.

AF079180    AF079180     1422bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHC1a mRNA, complete cds.
    RING-H2 finger protein RHC1a.

AF079181    AF079181     1278bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHF1a mRNA, partial cds.
    RING-H2 finger protein RHF1a.

AF079182    AF079182     1705bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHF2a mRNA, complete cds.
    RING-H2 finger protein RHF2a.

AF079183    AF079183      897bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHG1a mRNA, partial cds.
    RING-H2 finger protein RHG1a.

AF079184    AF079184     1034bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHX1a mRNA, partial cds.
    RING-H2 finger protein RHX1a.

AF079185    AF079185      605bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHY1a mRNA, partial cds.
    RING-H2 finger protein RHY1a.

AF079186    AF079186     1449bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana RING-H2 finger protein RHC2a mRNA, complete cds.
    RING-H2 finger protein RHC2a.

AF096281    AF096281     1779bp    mRNA     PLN      28-OCT-1998
    Arabidopsis thaliana threonine dehydratase/deaminase (OMR1) mRNA,
     complete cds.
    OMR1; threonine dehydratase/deaminase.

ATF4B14     AL031986    99461bp    DNA      PLN      27-OCT-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F4B14 (ESSAII project).
    F4B14.10; putative protein (fragment); F4B14.20; putative protein;
     F4B14.30; F4B14.40; senescence-associated protein sen1; F4B14.50;
     putative protein kinase; F4B14.60; F4B14.70; DNA-directed RNA polymerase
     (EC 2.7.7.6) II largest chain; F4B14.80; F4B14.90; F4B14.100;
     cytoplasmatic aconitate hydratase (citrate hydro-lyase)(aconitase)(EC
     4.2.1.3); F4B14.110; F4B14.120; F4B14.130; GTP-binding protein GB2;
     F4B14.140; F4B14.150; F4B14.160; F4B14.170; putative bZIP transcription
     factor; F4B14.180; F4B14.190; F4B14.200; hypothetical protein;
     F4B14.210; F4B14.220; ras-related small GTP-binding protein; F4B14.230;
     F4B14.240; putative ascorbate peroxidase; F4B14.250.

ATH012212   AJ012212       72bp    DNA      PLN      22-OCT-1998
    Arabidopsis thaliana tRNA-Gly (UCC) gene.
    transfer-RNA Gly; tRNA-Gly gene; tRNA-Gly (UCC); tRNA-Gly.

==================== Updated DNA Sequences =====================

AC005278    AC005278    71097bp    DNA      PLN      24-OCT-1998
    Arabidopsis thaliana chromosome 1 BAC F15K9 sequence, complete sequence.
    HTG.

AC005322    AC005322   113891bp    DNA      HTG      28-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 T7A14
     sequence; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005561    AC005561    98020bp    DNA      HTG      25-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9F8'
     genomic sequence near marker 'mi310'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC005724    AC005724   105444bp    DNA      HTG      23-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'MITSUI' BAC 'MSF3'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005727    AC005727   115722bp    DNA      HTG      23-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F8N16'
     genomic sequence near marker 'mi54'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC005770    AC005770   103874bp    DNA      HTG      27-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T7F6'
     genomic sequence near marker 'CIC10A06'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005819    AC005819    55870bp    DNA      HTG      24-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3A4'
     genomic sequence near marker 'CIC06C03'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AF055635    AF055635     1260bp    mRNA     PLN      28-OCT-1998
    Arabidopsis thaliana protein tyrosine phosphatase 1 (PTP1) mRNA, complete
     cds.
    PTP1; protein tyrosine phosphatase 1.

ATAC005499  AC005499   107541bp    DNA      PLN      23-OCT-1998
    Arabidopsis thaliana chromosome II BAC T6A23 genomic sequence, complete
     sequence.
    HTG; T6A23.1; T6A23.2; T6A23.3; T6A23.4; putative annexin; T6A23.5;
     T6A23.6; T6A23.7; putative peptidyl-prolyl cis-trans isomerase; T6A23.8;
     T6A23.9; T6A23.10; mevalonate diphosphate decarboxylase; T6A23.11;
     putative luminal protein; T6A23.12; T6A23.13; putative
     phosphoethanolamine cytidylyltransferase; T6A23.14; T6A23.15; T6A23.16;
     T6A23.17; T6A23.18; putative serine/threonine protein kinase; T6A23.19;
     putative elongation factor; T6A23.20; putative acid phosphatase;
     T6A23.21; T6A23.22; T6A23.23; T6A23.24; T6A23.25; putative non-green
     plastid inner envelope membrane protein; T6A23.26; T6A23.27; T6A23.28;
     T6A23.29; T6A23.30; T6A23.31; putative protein kinase; T6A23.32;
     T6A23.33; putative DNA-binding protein, 5' partial.

ATAC005560  AC005560   103125bp    DNA      PLN      23-OCT-1998
    Arabidopsis thaliana chromosome II BAC F2I9 genomic sequence, complete
     sequence.
    HTG; F2I9.1; F2I9.2; F2I9.3; F2I9.4; putative auxin transport protein;
     F2I9.5; putative homeobox protein; F2I9.6; putative DNA recombinase;
     F2I9.7; putative MAP kinase; F2I9.8; F2I9.9; Sec12p-like protein;
     F2I9.10; putative growth regulator protein; F2I9.11; F2I9.12; putative
     serine protease; F2I9.13; F2I9.14; putative major latex protein;
     F2I9.15; F2I9.16; F2I9.17; putative reverse transcriptase; F2I9.18;
     F2I9.19; RGA1 protein; F2I9.20; F2I9.21; F2I9.22; F2I9.23.

ATAC005693  AC005693    80891bp    DNA      PLN      28-OCT-1998
    Arabidopsis thaliana chromosome II BAC T25N22 genomic sequence, complete
     sequence.
    HTG; T25N22.1; cycloartenol synthase; T25N22.2; putative reverse
     transcriptase; T25N22.3; T25N22.4; putative gag-protease polyprotein;
     T25N22.5; T25N22.6; T25N22.7; T25N22.8; T25N22.9; T25N22.10; T25N22.11;
     T25N22.12; T25N22.13; T25N22.14; putative protein kinase; T25N22.15;
     T25N22.16; T25N22.17; T25N22.18; T25N22.19; putative mudR-like
     transposon; T25N22.20.

=========== Updated Sequence Features/Annotations  =============

AF045674    AF045674     1223bp    DNA      PLN      27-OCT-1998
    Arabidopsis arenosa isolate ADC-N arginine decarboxylase (spe2) gene,
     partial cds.
    spe2; arginine decarboxylase.

AF045685    AF045685     1217bp    DNA      PLN      27-OCT-1998
    Arabidopsis arenosa isolate ADC-O arginine decarboxylase (spe2) gene,
     partial cds.
    spe2; arginine decarboxylase.

AF064654    AF064654      780bp    DNA      PLN      27-OCT-1998
    Arabidopsis thaliana NADH dehydrogenase subunit F (ndhF) gene,
     chloroplast gene encoding chloroplast protein, partial cds.
    ndhF; NADH dehydrogenase subunit F.

ATF13D4     AL031369    88098bp    DNA      PLN      27-OCT-1998
    Arabidopsis thaliana DNA, BAC clone F13D4 (ESSAII project), probably
     chr.5.
    F13D4.10; putative protein; F13D4.20; F13D4.30; Protein phosphatase 2C -
     like protein; F13D4.40; glutathione peroxidase precursor; F13D4.50;
     hypothetical protein; F13D4.60; F13D4.70; F13D4.80; F13D4.90; F13D4.100;
     ATP-dependent Clp proteinase - like protein; F13D4.110; F13D4.120;
     cytochrome P450 - like protein; F13D4.130; F13D4.140; F13D4.150;
     F13D4.160; F13D4.170.

ATF20O9     AL021749    93695bp    DNA      PLN      27-OCT-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F20O9 (ESSAII project).
    F20O9.10; hypothetical protein; F20O9.20; F20O9.40; receptor protein
     kinase like protein; F20O9.30; copper-binding protein-like; F20O9.50;
     F20O9.70; extensin-like protein; F20O9.60; ADP, ATP carrier-like
     protein; F20O9.80; protein phosphatase 2C-like protein; F20O9.90;
     F20O9.100; tyrosine transaminase-like protein; F20O9.110; F20O9.120;
     putative protein; F20O9.130; SOF1 protein-like protein; F20O9.140;
     F20O9.150; F20O9.160; heat-shock protein; F20O9.170; F20O9.180;
     receptor-like protein kinase 5 precursor (RLK5); F20O9.190; predicted
     protein; F20O9.200; prohibitin-like protein; F20O9.210; 12S cruciferin
     seed storage protein; F20O9.220; NAM / CUC2 -like protein; F20O9.230;
     F20O9.240; protein kinase ADK1-like protein.

ATU78721    U78721   114144bp    DNA      PLN      28-OCT-1998
    Arabidopsis thaliana chromosome II BAC T1B8 genomic sequence, complete
     sequence.
    HTG; T1B8.26; Barley Mlo protein isolog, 5' partial; T1B8.1; T1B8.27;
     T1B8.2; protein phosphatase 2C isolog; T1B8.3; cadmium-induced protein
     isolog; T1B8.29; T1B8.4; RNA helicase isolog; T1B8.5; CutA isolog;
     T1B8.6; T1B8.7; T1B8.8; Ubiquitin-conjugating enzyme, E2-16kD isolog;
     T1B8.28; T1B8.9; proline-rich protein isolog; T1B8.10; 30S ribosomal
     protein S5 isolog; T1B8.11; Squamosa-promoter binding protein 1 isolog;
     T1B8.12; mitochondrial carrier protein isolog; T1B8.13; auxin-repressed
     protein isolog; T1B8.14; tyrosyl-tRNA synthetase isolog; T1B8.15;
     T1B8.30; ETTIN protein; T1B8.16; GTP binding protein isolog; T1B8.31;
     Serine proteinase (stubble) isolog; T1B8.17; tRNA-Pro; T1B8.18; T1B8.19;
     T1B8.20; T1B8.21; T1B8.22; T1B8.23; T1B8.24; T1B8.25; T1B8.32.

ATU84258    U84258     3735bp    DNA      PLN      29-OCT-1998
    Arabidopsis thaliana flavonol synthase gene, complete cds.
    flavonol synthase.

ATU84259    U84259     1234bp    mRNA     PLN      29-OCT-1998
    Arabidopsis thaliana flavonol synthase mRNA, complete cds.
    flavonol synthase.

ATU96455    U96455     3475bp    mRNA     PLN      27-OCT-1998
    Arabidopsis thaliana ER-type Ca2+-pumping ATPase (ECA1) mRNA, complete
     cds.
    ECA1; ER-type Ca2+-pumping ATPase.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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