New Arabidopsis DNA 07-Nov-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sun Nov 8 19:51:48 EST 1998


====================== New DNA Sequences =======================

AC005896    AC005896   127034bp    DNA      HTG      31-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F3G5'
     genomic sequence near marker 've018'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC005897    AC005897    93564bp    DNA      HTG      31-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T10J7'
     genomic sequence near marker 'mi398'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC005898    AC005898    48836bp    DNA      HTG      31-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6C20'
     genomic sequence near marker 'g4532'; HTGS phase 1, 9 unordered pieces.
    HTG; HTGS_PHASE1.

AC005916    AC005916    81697bp    DNA      HTG      03-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     T17H3 sequence; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC005917    AC005917   104321bp    DNA      HTG      03-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F3P11'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 8 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005936    AC005936   100750bp    DNA      HTG      05-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F5O4'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AF062372    AF062372     5232bp    DNA      PLN      31-OCT-1998
    Arabidopsis thaliana ROOT HAIRLESS 1 (RHL1) gene, complete cds.
    RHL1; ROOT HAIRLESS 1.

AF074948    AF074948      690bp    mRNA     PLN      03-NOV-1998
    Arabidopsis thaliana FIL mRNA, complete cds.
    FIL.

AF077955    AF077955     1587bp    mRNA     PLN      03-NOV-1998
    Arabidopsis thaliana branched-chain alpha keto-acid dehydrogenase E1
     alpha subunit mRNA, partial cds.
    branched-chain alpha keto-acid dehydrogenase E1 alpha subunit.

AF080676    AF080676    15774bp    DNA      PLN      01-NOV-1998
    Arabidopsis thaliana cytidine deaminase 7 (CDA7), cytidine deaminase 6
     (CDA6), cytidine deaminase 2 (CDA2), cytidine deaminase 3 (CDA3),
     cytidine deaminase 5 (CDA5), and cytidine deaminase 4 (CDA4) genes,
     complete cds.
    CDA7; cytidine deaminase 7; CDA6; cytidine deaminase 6; CDA2; cytidine
     deaminase 2; CDA3; cytidine deaminase 3; CDA5; cytidine deaminase 5;
     CDA4; cytidine deaminase 4.

AF087932    AF087932     1711bp    mRNA     PLN      03-NOV-1998
    Arabidopsis thaliana hydroperoxide lyase (HPL1) mRNA, complete cds.
    HPL1; hydroperoxide lyase.

AF095912    AF095912     3971bp    DNA      PLN      01-NOV-1998
    Arabidopsis thaliana actin related protein 2 (ARP2) gene, complete cds.
    ARP2; actin related protein 2.

AF099970    AF099970     1481bp    mRNA     PLN      02-NOV-1998
    Arabidopsis thaliana putative formamidopyrimidine-DNA glycosylase 1
     (fpg1) mRNA, complete cds.
    fpg1; putative formamidopyrimidine-DNA glycosylase 1.

AF099971    AF099971     1294bp    mRNA     PLN      02-NOV-1998
    Arabidopsis thaliana putative formamidopyrimidine-DNA glycosylase 2
     (fpg2) mRNA, complete cds.
    fpg2; putative formamidopyrimidine-DNA glycosylase 2.

ATAJ4161    AJ224161     1705bp    mRNA     PLN      31-OCT-1998
    Arabidopsis thaliana mRNA for delta-8 sphingolipid desaturase.
    delta-8 sphingolipid desaturase; fusion protein; sld1 gene; sld1.

ATY12636    Y12636     4188bp    DNA      PLN      02-NOV-1998
    Arabidopsis thaliana aos gene.
    allene oxide synthase; CYP74; aos.

==================== Updated DNA Sequences =====================

AC004561    AC004561   131744bp    DNA      HTG      31-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16P2'
     genomic sequence near marker 'mi54'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005292    AC005292    95658bp    DNA      HTG      05-NOV-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F26F24; HTGS phase 1, 8 unordered pieces.
    HTG; HTGS_PHASE1.

AC005561    AC005561    90859bp    DNA      HTG      31-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9F8'
     genomic sequence near marker 'mi310'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005724    AC005724    92849bp    DNA      HTG      05-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'MITSUI' P1 'MSF3'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005727    AC005727   107097bp    DNA      HTG      31-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F8N16'
     genomic sequence near marker 'mi54'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005770    AC005770   103874bp    DNA      HTG      04-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T7F6'
     genomic sequence near marker 'CIC10A06'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005824    AC005824   118196bp    DNA      HTG      31-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F15K20'
     genomic sequence near marker 'B68'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005851    AC005851    99579bp    DNA      HTG      31-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F24D13'
     genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC005861    AC005861   112340bp    DNA      HTG      31-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F23B24'
     genomic sequence near marker 'mi473'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AF079183    AF079183      896bp    mRNA     PLN      03-NOV-1998
    Arabidopsis thaliana RING-H2 finger protein RHG1a mRNA, partial cds.
    RING-H2 finger protein RHG1a.

ATAC005398  AC005398    92524bp    DNA      PLN      30-OCT-1998
    Arabidopsis thaliana chromosome II BAC T6B13 genomic sequence, complete
     sequence.
    HTG; T6B13.1; APS kinase, 3' partial; T6B13.2; vacuolar sorting
     receptor-like protein; T6B13.3; T6B13.4; T6B13.5; T6B13.6; T6B13.7;
     T6B13.8; T6B13.9; putative sucrose-proton symporter; T6B13.10; T6B13.11;
     putative reverse-transcriptase; T6B13.12; reverse-transcriptase-like
     protein; T6B13.13; T6B13.14; putative endo-xyloglucan transferase;
     T6B13.15; PR-1-like protein; T6B13.16; T6B13.17; T6B13.18.

ATAC005700  AC005700   100424bp    DNA      PLN      03-NOV-1998
    Arabidopsis thaliana chromosome II BAC T32F6 genomic sequence, complete
     sequence.
    HTG; T32F6.1; T32F6.2; myb-related protein; T32F6.3; putative O-GlcNAc
     transferase; T32F6.4; putative cytochrome P450; T32F6.5; T32F6.6;
     T32F6.7; putative ubiquitin activating enzyme; T32F6.8; putative ion
     channel protein; T32F6.9; T32F6.10; T32F6.11; putative homeobox protein;
     T32F6.12; T32F6.13; T32F6.14; T32F6.15; T32F6.16; T32F6.17; T32F6.18;
     uclacyanin I; T32F6.19; putative beta-amylase; T32F6.20; T32F6.21;
     putative zinc transporter; T32F6.22; putative phosphocholine
     cytidylyltransferase; T32F6.23; T32F6.24.

ATAC005819  AC005819    55870bp    DNA      PLN      03-NOV-1998
    Arabidopsis thaliana chromosome II BAC T3A4 genomic sequence, complete
     sequence.
    HTG; T3A4.1; putative extensin; T3A4.2; T3A4.3; putative cytochrome b5;
     T3A4.4; putative cytochrome P450; T3A4.5; T3A4.6; homeobox-leucine
     zipper protein; T3A4.7; putative auxin-regulated protein; T3A4.8;
     putative protein kinase; T3A4.9; T3A4.10; putative beta-ketoacyl-CoA
     synthase.

=========== Updated Sequence Features/Annotations  =============

AF079178    AF079178      348bp    mRNA     PLN      03-NOV-1998
    Arabidopsis thaliana RING-H2 finger protein RHA4a mRNA, partial cds.
    RING-H2 finger protein RHA4a.

AF079179    AF079179      998bp    mRNA     PLN      03-NOV-1998
    Arabidopsis thaliana RING-H2 finger protein RHB1a mRNA, complete cds.
    RING-H2 finger protein RHB1a.

AF079180    AF079180     1422bp    mRNA     PLN      03-NOV-1998
    Arabidopsis thaliana RING-H2 finger protein RHC1a mRNA, complete cds.
    RING-H2 finger protein RHC1a.

AF079181    AF079181     1278bp    mRNA     PLN      03-NOV-1998
    Arabidopsis thaliana RING-H2 finger protein RHF1a mRNA, partial cds.
    RING-H2 finger protein RHF1a.

AF079182    AF079182     1705bp    mRNA     PLN      03-NOV-1998
    Arabidopsis thaliana RING-H2 finger protein RHF2a mRNA, complete cds.
    RING-H2 finger protein RHF2a.

AF079184    AF079184     1034bp    mRNA     PLN      03-NOV-1998
    Arabidopsis thaliana RING-H2 finger protein RHX1a mRNA, partial cds.
    RING-H2 finger protein RHX1a.

AF079185    AF079185      605bp    mRNA     PLN      03-NOV-1998
    Arabidopsis thaliana RING-H2 finger protein RHY1a mRNA, partial cds.
    RING-H2 finger protein RHY1a.

AF079186    AF079186     1449bp    mRNA     PLN      03-NOV-1998
    Arabidopsis thaliana RING-H2 finger protein RHC2a mRNA, complete cds.
    RING-H2 finger protein RHC2a.

AF096281    AF096281     1779bp    mRNA     PLN      04-NOV-1998
    Arabidopsis thaliana threonine dehydratase/deaminase (OMR1) mRNA,
     complete cds.
    OMR1; threonine dehydratase/deaminase.

ATAJ3357    AJ223357     4029bp    DNA      PLN      29-OCT-1998
    Arabidopsis thaliana SKOR gene.
    potassium channel; SKOR gene; SKOR.

ATH9671     AJ009671     4191bp    DNA      PLN      02-NOV-1998
    Arabidopsis thaliana gene encoding putative kinase, partial.
    kinase; putative; putative kinase.

ATH9672     AJ009672      719bp    mRNA     PLN      02-NOV-1998
    Arabidopsis thaliana mRNA for centrin.
    caltractin; centrin.

ATU84258    U84258     3735bp    DNA      PLN      30-OCT-1998
    Arabidopsis thaliana cultivar Columbia flavonol synthase gene, complete
     cds.
    flavonol synthase.

ATU84259    U84259     1234bp    mRNA     PLN      30-OCT-1998
    Arabidopsis thaliana cultivar Columbia flavonol synthase mRNA, complete
     cds.
    flavonol synthase.

F9K20       AC005679    90425bp    DNA      PLN      04-NOV-1998
    Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence.
    HTG; F9K20.1; F9K20.2; F9K20.3; F9K20.4; F9K20.5; F9K20.6; F9K20.7;
     F9K20.8; F9K20.9; F9K20.10; F9K20.11; F9K20.12; F9K20.13; F9K20.14;
     F9K20.15; F9K20.16; F9K20.17; F9K20.18; F9K20.19; F9K20.20; F9K20.21;
     F9K20.22; F9K20.23; F9K20.24; F9K20.25; F9K20.26; F9K20.27; F9K20.28;
     F9K20.29; F9K20.30.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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