New Arabidopsis DNA 07-Nov-1998
AtDB Project
arabidopsis-seq at genome.stanford.edu
Sun Nov 8 19:51:48 EST 1998
====================== New DNA Sequences =======================
AC005896 AC005896 127034bp DNA HTG 31-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F3G5'
genomic sequence near marker 've018'; HTGS phase 1, 6 unordered pieces.
HTG; HTGS_PHASE1.
AC005897 AC005897 93564bp DNA HTG 31-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T10J7'
genomic sequence near marker 'mi398'; HTGS phase 1, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC005898 AC005898 48836bp DNA HTG 31-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6C20'
genomic sequence near marker 'g4532'; HTGS phase 1, 9 unordered pieces.
HTG; HTGS_PHASE1.
AC005916 AC005916 81697bp DNA HTG 03-NOV-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
T17H3 sequence; HTGS phase 1, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC005917 AC005917 104321bp DNA HTG 03-NOV-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F3P11'
genomic sequence near marker 'CIC06E08'; HTGS phase 1, 8 unordered
pieces.
HTG; HTGS_PHASE1.
AC005936 AC005936 100750bp DNA HTG 05-NOV-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F5O4'
genomic sequence near marker 'CIC11A04'; HTGS phase 1, 3 unordered
pieces.
HTG; HTGS_PHASE1.
AF062372 AF062372 5232bp DNA PLN 31-OCT-1998
Arabidopsis thaliana ROOT HAIRLESS 1 (RHL1) gene, complete cds.
RHL1; ROOT HAIRLESS 1.
AF074948 AF074948 690bp mRNA PLN 03-NOV-1998
Arabidopsis thaliana FIL mRNA, complete cds.
FIL.
AF077955 AF077955 1587bp mRNA PLN 03-NOV-1998
Arabidopsis thaliana branched-chain alpha keto-acid dehydrogenase E1
alpha subunit mRNA, partial cds.
branched-chain alpha keto-acid dehydrogenase E1 alpha subunit.
AF080676 AF080676 15774bp DNA PLN 01-NOV-1998
Arabidopsis thaliana cytidine deaminase 7 (CDA7), cytidine deaminase 6
(CDA6), cytidine deaminase 2 (CDA2), cytidine deaminase 3 (CDA3),
cytidine deaminase 5 (CDA5), and cytidine deaminase 4 (CDA4) genes,
complete cds.
CDA7; cytidine deaminase 7; CDA6; cytidine deaminase 6; CDA2; cytidine
deaminase 2; CDA3; cytidine deaminase 3; CDA5; cytidine deaminase 5;
CDA4; cytidine deaminase 4.
AF087932 AF087932 1711bp mRNA PLN 03-NOV-1998
Arabidopsis thaliana hydroperoxide lyase (HPL1) mRNA, complete cds.
HPL1; hydroperoxide lyase.
AF095912 AF095912 3971bp DNA PLN 01-NOV-1998
Arabidopsis thaliana actin related protein 2 (ARP2) gene, complete cds.
ARP2; actin related protein 2.
AF099970 AF099970 1481bp mRNA PLN 02-NOV-1998
Arabidopsis thaliana putative formamidopyrimidine-DNA glycosylase 1
(fpg1) mRNA, complete cds.
fpg1; putative formamidopyrimidine-DNA glycosylase 1.
AF099971 AF099971 1294bp mRNA PLN 02-NOV-1998
Arabidopsis thaliana putative formamidopyrimidine-DNA glycosylase 2
(fpg2) mRNA, complete cds.
fpg2; putative formamidopyrimidine-DNA glycosylase 2.
ATAJ4161 AJ224161 1705bp mRNA PLN 31-OCT-1998
Arabidopsis thaliana mRNA for delta-8 sphingolipid desaturase.
delta-8 sphingolipid desaturase; fusion protein; sld1 gene; sld1.
ATY12636 Y12636 4188bp DNA PLN 02-NOV-1998
Arabidopsis thaliana aos gene.
allene oxide synthase; CYP74; aos.
==================== Updated DNA Sequences =====================
AC004561 AC004561 131744bp DNA HTG 31-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16P2'
genomic sequence near marker 'mi54'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005292 AC005292 95658bp DNA HTG 05-NOV-1998
*** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
BAC F26F24; HTGS phase 1, 8 unordered pieces.
HTG; HTGS_PHASE1.
AC005561 AC005561 90859bp DNA HTG 31-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9F8'
genomic sequence near marker 'mi310'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005724 AC005724 92849bp DNA HTG 05-NOV-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'MITSUI' P1 'MSF3'
genomic sequence near marker 'CIC06E08'; HTGS phase 1, 2 unordered
pieces.
HTG; HTGS_PHASE1.
AC005727 AC005727 107097bp DNA HTG 31-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F8N16'
genomic sequence near marker 'mi54'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005770 AC005770 103874bp DNA HTG 04-NOV-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T7F6'
genomic sequence near marker 'CIC10A06'; HTGS phase 1, 2 unordered
pieces.
HTG; HTGS_PHASE1.
AC005824 AC005824 118196bp DNA HTG 31-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F15K20'
genomic sequence near marker 'B68'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005851 AC005851 99579bp DNA HTG 31-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F24D13'
genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC005861 AC005861 112340bp DNA HTG 31-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F23B24'
genomic sequence near marker 'mi473'; HTGS phase 1, 6 unordered pieces.
HTG; HTGS_PHASE1.
AF079183 AF079183 896bp mRNA PLN 03-NOV-1998
Arabidopsis thaliana RING-H2 finger protein RHG1a mRNA, partial cds.
RING-H2 finger protein RHG1a.
ATAC005398 AC005398 92524bp DNA PLN 30-OCT-1998
Arabidopsis thaliana chromosome II BAC T6B13 genomic sequence, complete
sequence.
HTG; T6B13.1; APS kinase, 3' partial; T6B13.2; vacuolar sorting
receptor-like protein; T6B13.3; T6B13.4; T6B13.5; T6B13.6; T6B13.7;
T6B13.8; T6B13.9; putative sucrose-proton symporter; T6B13.10; T6B13.11;
putative reverse-transcriptase; T6B13.12; reverse-transcriptase-like
protein; T6B13.13; T6B13.14; putative endo-xyloglucan transferase;
T6B13.15; PR-1-like protein; T6B13.16; T6B13.17; T6B13.18.
ATAC005700 AC005700 100424bp DNA PLN 03-NOV-1998
Arabidopsis thaliana chromosome II BAC T32F6 genomic sequence, complete
sequence.
HTG; T32F6.1; T32F6.2; myb-related protein; T32F6.3; putative O-GlcNAc
transferase; T32F6.4; putative cytochrome P450; T32F6.5; T32F6.6;
T32F6.7; putative ubiquitin activating enzyme; T32F6.8; putative ion
channel protein; T32F6.9; T32F6.10; T32F6.11; putative homeobox protein;
T32F6.12; T32F6.13; T32F6.14; T32F6.15; T32F6.16; T32F6.17; T32F6.18;
uclacyanin I; T32F6.19; putative beta-amylase; T32F6.20; T32F6.21;
putative zinc transporter; T32F6.22; putative phosphocholine
cytidylyltransferase; T32F6.23; T32F6.24.
ATAC005819 AC005819 55870bp DNA PLN 03-NOV-1998
Arabidopsis thaliana chromosome II BAC T3A4 genomic sequence, complete
sequence.
HTG; T3A4.1; putative extensin; T3A4.2; T3A4.3; putative cytochrome b5;
T3A4.4; putative cytochrome P450; T3A4.5; T3A4.6; homeobox-leucine
zipper protein; T3A4.7; putative auxin-regulated protein; T3A4.8;
putative protein kinase; T3A4.9; T3A4.10; putative beta-ketoacyl-CoA
synthase.
=========== Updated Sequence Features/Annotations =============
AF079178 AF079178 348bp mRNA PLN 03-NOV-1998
Arabidopsis thaliana RING-H2 finger protein RHA4a mRNA, partial cds.
RING-H2 finger protein RHA4a.
AF079179 AF079179 998bp mRNA PLN 03-NOV-1998
Arabidopsis thaliana RING-H2 finger protein RHB1a mRNA, complete cds.
RING-H2 finger protein RHB1a.
AF079180 AF079180 1422bp mRNA PLN 03-NOV-1998
Arabidopsis thaliana RING-H2 finger protein RHC1a mRNA, complete cds.
RING-H2 finger protein RHC1a.
AF079181 AF079181 1278bp mRNA PLN 03-NOV-1998
Arabidopsis thaliana RING-H2 finger protein RHF1a mRNA, partial cds.
RING-H2 finger protein RHF1a.
AF079182 AF079182 1705bp mRNA PLN 03-NOV-1998
Arabidopsis thaliana RING-H2 finger protein RHF2a mRNA, complete cds.
RING-H2 finger protein RHF2a.
AF079184 AF079184 1034bp mRNA PLN 03-NOV-1998
Arabidopsis thaliana RING-H2 finger protein RHX1a mRNA, partial cds.
RING-H2 finger protein RHX1a.
AF079185 AF079185 605bp mRNA PLN 03-NOV-1998
Arabidopsis thaliana RING-H2 finger protein RHY1a mRNA, partial cds.
RING-H2 finger protein RHY1a.
AF079186 AF079186 1449bp mRNA PLN 03-NOV-1998
Arabidopsis thaliana RING-H2 finger protein RHC2a mRNA, complete cds.
RING-H2 finger protein RHC2a.
AF096281 AF096281 1779bp mRNA PLN 04-NOV-1998
Arabidopsis thaliana threonine dehydratase/deaminase (OMR1) mRNA,
complete cds.
OMR1; threonine dehydratase/deaminase.
ATAJ3357 AJ223357 4029bp DNA PLN 29-OCT-1998
Arabidopsis thaliana SKOR gene.
potassium channel; SKOR gene; SKOR.
ATH9671 AJ009671 4191bp DNA PLN 02-NOV-1998
Arabidopsis thaliana gene encoding putative kinase, partial.
kinase; putative; putative kinase.
ATH9672 AJ009672 719bp mRNA PLN 02-NOV-1998
Arabidopsis thaliana mRNA for centrin.
caltractin; centrin.
ATU84258 U84258 3735bp DNA PLN 30-OCT-1998
Arabidopsis thaliana cultivar Columbia flavonol synthase gene, complete
cds.
flavonol synthase.
ATU84259 U84259 1234bp mRNA PLN 30-OCT-1998
Arabidopsis thaliana cultivar Columbia flavonol synthase mRNA, complete
cds.
flavonol synthase.
F9K20 AC005679 90425bp DNA PLN 04-NOV-1998
Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence.
HTG; F9K20.1; F9K20.2; F9K20.3; F9K20.4; F9K20.5; F9K20.6; F9K20.7;
F9K20.8; F9K20.9; F9K20.10; F9K20.11; F9K20.12; F9K20.13; F9K20.14;
F9K20.15; F9K20.16; F9K20.17; F9K20.18; F9K20.19; F9K20.20; F9K20.21;
F9K20.22; F9K20.23; F9K20.24; F9K20.25; F9K20.26; F9K20.27; F9K20.28;
F9K20.29; F9K20.30.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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