New Arabidopsis DNA 14-Nov-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sun Nov 15 16:38:03 EST 1998


====================== New DNA Sequences =======================

AC005956    AC005956   100433bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'MITSUI' P1 'MHK10'
     genomic sequence near marker 'EG05C12'; HTGS phase 1, 6 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005957    AC005957   124929bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T15J14'
     genomic sequence near marker 'mi398'; HTGS phase 1, 8 unordered pieces.
    HTG; HTGS_PHASE1.

AF031607    AF031607     4433bp    DNA      PLN      11-NOV-1998
    Arabidopsis thaliana male sterility MS5 gene, complete cds.
    MS5; male sterility MS5.

AF031608    AF031608     1090bp    mRNA     PLN      11-NOV-1998
    Arabidopsis thaliana MS5-like protein mRNA, partial cds.
    MS5-like protein.

AF067792    AF067792     1356bp    mRNA     PLN      11-NOV-1998
    Arabidopsis thaliana MAP kinase kinase 1 (MK1) mRNA, complete cds.
    MK1; MAP kinase kinase 1.

AF084570    AF084570     1160bp    mRNA     PLN      12-NOV-1998
    Arabidopsis thaliana FKBP12 interacting protein (FIP37) mRNA, complete
     cds.
    FIP37; FKBP12 interacting protein.

AF095452    AF095452     1986bp    mRNA     PLN      11-NOV-1998
    Arabidopsis thaliana asparagine synthetase (ASN3) mRNA, complete cds.
    ASN3; asparagine synthetase.

AF095453    AF095453     1960bp    mRNA     PLN      11-NOV-1998
    Arabidopsis thaliana asparagine synthetase (ASN2) mRNA, complete cds.
    ASN2; asparagine synthetase.

AF098962    AF098962     4053bp    DNA      PLN      12-NOV-1998
    Arabidopsis thaliana disease resistance protein RPP1-WsA gene, complete
     cds.
    disease resistance protein RPP1-WsA.

AF098963    AF098963     4187bp    DNA      PLN      12-NOV-1998
    Arabidopsis thaliana disease resistance protein RPP1-WsB gene, partial
     cds.
    disease resistance protein RPP1-WsB.

AF098964    AF098964     4187bp    DNA      PLN      12-NOV-1998
    Arabidopsis thaliana disease resistance protein RPP1-WsC gene, partial
     cds.
    disease resistance protein RPP1-WsC.

AF099906    AF099906      570bp    mRNA     PLN      10-NOV-1998
    Arabidopsis thaliana J8 mRNA, nuclear gene encoding plastid protein,
     complete cds.
    J8.

AF102173    AF102173     5543bp    DNA      PLN      10-NOV-1998
    Arabidopsis thaliana actin depolymerizing factor 1 (ADF1) gene, complete
     cds.
    ADF1; actin depolymerizing factor 1.

ATRNABIND   Y15382     1291bp    mRNA     PLN      06-NOV-1998
    Arabidopsis thaliana mRNA for putative RNA binding protein.
    RNA binding protein; putative RNA binding protein.

T15B16      AF104919    90596bp    DNA      PLN      11-NOV-1998
    Arabidopsis thaliana BAC T15B16.
    T15B16.7; T15B16.8; T15B16.6; T15B16.9; T15B16.10; T15B16.11; T15B16.12;
     T15B16.5; T15B16.13; T15B16.4; T15B16.14; T15B16.3; T15B16.15;
     T15B16.16; T15B16.17a; T15B16.17b; T15B16.2; T15B16.1; T15B16.18.

T9E19       AF104920    18813bp    DNA      PLN      11-NOV-1998
    Arabidopsis thaliana BAC T9E19.
    T9E19.2; T9E19.1.

==================== Updated DNA Sequences =====================

AC005312    AC005312    74903bp    DNA      HTG      06-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16F16'
     genomic sequence near marker 'CIC11A04'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005508    AC005508    85372bp    DNA      PLN      06-NOV-1998
    Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete
     sequence.
    HTG.

AC005698    AC005698    94540bp    DNA      HTG      07-NOV-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T3P18; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC005770    AC005770    96827bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T7F6'
     genomic sequence near marker 'CIC10A06'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005825    AC005825   115609bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T24I21'
     genomic sequence near marker 'mi398'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC005882    AC005882    87394bp    DNA      PLN      12-NOV-1998
    Arabidopsis thaliana chromosome I BAC T13M11 genomic sequence, complete
     sequence.
    HTG.

AC005897    AC005897    94176bp    DNA      HTG      11-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T10J7'
     genomic sequence near marker 'mi398'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC005898    AC005898    69935bp    DNA      HTG      06-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6C20'
     genomic sequence near marker 'g4532'; HTGS phase 1, 13 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC005824  AC005824   118196bp    DNA      PLN      12-NOV-1998
    Arabidopsis thaliana chromosome II BAC F15K20 genomic sequence, complete
     sequence.
    HTG; F15K20.1; F15K20.2; putative argonaute protein; F15K20.3; putative
     reverse-transcriptase protein; F15K20.4; F15K20.5; tRNA-Gly; F15K20.6;
     F15K20.7; F15K20.8; putative chloroplast prephenate dehydratase;
     F15K20.9; putative permease; F15K20.10; F15K20.11; F15K20.12; F15K20.13;
     F15K20.14; putative tRNA isopentenylpyrophosphate transferase;
     F15K20.15; F15K20.16; F15K20.17; F15K20.18; putative acidic ribosomal
     protein; F15K20.19; F15K20.20; F15K20.21; putative cytochrome p450
     protein; F15K20.22; F15K20.23; F15K20.24; F15K20.25; F15K20.26;
     F15K20.27; F15K20.28; F15K20.29; putative selenium-binding protein;
     F15K20.30; putative suppressor protein; F15K20.31; F15K20.32; F15K20.33;
     F15K20.34; tRNA-Lys; F15K20.35; putative GTP-binding protein; F15K20.36;
     F15K20.37; putative ribosomal protein L10; F15K20.38.

ATF10N7     AL021636    96583bp    DNA      PLN      09-NOV-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F10N7 (ESSAII project).
    F10N7.10; hypothetical protein; F10N7.20; cytochrome P450-like protein;
     F10N7.30; putative protein; F10N7.40; synaptobrevin-like protein;
     F10N7.50; F10N7.60; F10N7.70; F10N7.80; F10N7.90; F10N7.100; F10N7.110;
     F10N7.120; F10N7.140; F10N7.130; F10N7.150; homeodomain containing
     protein 1; F10N7.160; F10N7.170; F10N7.180; predicted protein;
     F10N7.190; serine/threonine protein kinase like protein; F10N7.200;
     aspartate aminotransferase; F10N7.210; F10N7.220; Cytochrome P450-like
     protein; F10N7.230; F10N7.240; F10N7.250; F10N7.260; F10N7.270;
     F10N7.280.

ATT16L1     AL031394    98124bp    DNA      PLN      10-NOV-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone T16L1 (ESSAII project).
    T16L1.10; metal-transporting P-type ATPase (fragment); T16L1.20; putative
     potassium transporter AtKT5p (AtKT5); T16L1.30; putative protein;
     T16L1.40; T16L1.50; T16L1.60; T16L1.70; carbonate dehydratase - like
     protein; T16L1.80; hypothetical protein; T16L1.90; T16L1.100; T16L1.110;
     T16L1.120; T16L1.130; T16L1.140; Arabidopsis dynamin-like protein ADL2;
     T16L1.150; T16L1.160; T16L1.170; T16L1.180; T16L1.190; T16L1.200;
     pathogenesis-related protein 1 precursor, 18.9K; T16L1.210;
     pathogenesis-related protein 1 precursor, 19.3K; T16L1.220;
     pathogenesis-related protein - like; T16L1.230; T16L1.240; T16L1.250;
     putative aspartate--tRNA ligase; T16L1.260; T16L1.270; T16L1.280; male
     sterility 2-like protein; T16L1.290; T16L1.300; beta-xylan endohydrolase
     -like protein.

=========== Updated Sequence Features/Annotations  =============

AF033204    AF033204     4065bp    DNA      PLN      10-NOV-1998
    Arabidopsis thaliana putative pectin methylesterase (PME3) gene, complete
     cds.
    PME3; putative pectin methylesterase.

ATATPGP1    X61370     6300bp    DNA      PLN      09-NOV-1998
    A.thaliana atpgp1 gene for P-glycoprotein, homologous to mammalian mdr
     genes.
    atpgp1; P-glycoprotein.

ATF28M20    AL031004    90902bp    DNA      PLN      04-NOV-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F28M20 (ESSAII project).
    F28M20.10; putative protein; F28M20.20; methyltransferase - like protein;
     F28M20.30; monogalactosyldiacylglycerol synthase - like protein;
     F28M20.40; RNA lariat debranching enzyme - like protein; F28M20.50;
     peroxidase - like protein; F28M20.60; F28M20.70; F28M20.80; hypothetical
     protein; F28M20.90; Transcription factor II homolog; F28M20.100;
     F28M20.110; ribosomal protein S6 - like; F28M20.120; F28M20.130;
     F28M20.140; F28M20.150; F28M20.160; F28M20.170; F28M20.180; F28M20.190;
     F28M20.200; F28M20.210; F28M20.220; F28M20.230; RSZp22 splicing factor;
     F28M20.240.

ATMDH       Y13987     1420bp    mRNA     PLN      04-NOV-1998
    Arabidopsis thaliana mRNA for chloroplast NAD-dependent malate
     dehydrogenase.
    NAD-dependent malate dehydrogenase; mdh; Subcellular localisation is
     confirmed by import of in vitro translated product in chloroplasts.;
     chloroplast NAD-MDH.

F15K9       AC005278    71097bp    DNA      PLN      07-NOV-1998
    Arabidopsis thaliana chromosome 1 BAC F15K9 sequence, complete sequence.
    HTG; F15K9.1; F15K9.2; F15K9.3; F15K9.4; F15K9.5; F15K9.6; F15K9.7;
     F15K9.8; F15K9.9; F15K9.10; F15K9.11; F15K9.12; F15K9.13; F15K9.14;
     F15K9.15; F15K9.16; F15K9.17; F15K9.18; F15K9.19; F15K9.20; F15K9.21;
     F15k9.21; F15K9.22; F15K9.23.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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