New Arabidopsis DNA 21-Nov-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Nov 21 14:35:24 EST 1998


====================== New DNA Sequences =======================

AB005746    AB005746     7299bp    DNA      PLN      12-NOV-1998
    Arabidopsis thaliana DNA for inorganic phosphate transporter, complete
     cds.
    inorganic phosphate transporter.

AB013886    AB013886     1276bp    mRNA     PLN      10-NOV-1998
    Arabidopsis thaliana mRNA for RAV1, complete cds.
    RAV1.

AB013887    AB013887     1315bp    mRNA     PLN      10-NOV-1998
    Arabidopsis thaliana mRNA for RAV2, complete cds.
    RAV2.

AB016166    AB016166     8630bp    DNA      PLN      14-NOV-1998
    Arabidopsis thaliana gene for Phosphate Transporter 4, complete cds.
    Phosphate Transporter 4; PHT4.

AB017193    AB017193     4694bp    DNA      PLN      12-NOV-1998
    Arabidopsis thaliana phosphate transporter pseudogene.
    phosphate transporter.

AB019223    AB019223    51529bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, TAC clone: K11I1; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB019224    AB019224    67720bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, TAC clone: K17O22; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB019225    AB019225    25275bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, TAC clone: K1O13; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB019226    AB019226    73999bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, TAC clone: K24M7; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB019227    AB019227    52717bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MBM17; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB019228    AB019228    87090bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MCK7; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB019229    AB019229    84294bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 3, P1 clone: MDC16; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB019230    AB019230    74968bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 3, P1 clone: MEB5; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB019231    AB019231    43570bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MGO3; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB019232    AB019232    80818bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 3, P1 clone: MIL23; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB019233    AB019233    58589bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MJB24; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB019234    AB019234    27229bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MKN22; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB019235    AB019235    81736bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MMI9; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB019236    AB019236    81494bp    DNA      HTG      10-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MXK3; HTGS phase 2.
    HTG; HTGS_PHASE2.

AC005964    AC005964    91916bp    DNA      PLN      13-NOV-1998
    Arabidopsis thaliana chromosome V map 60.5 cM, complete sequence.
    HTG.

AC005965    AC005965    77036bp    DNA      PLN      13-NOV-1998
    Arabidopsis thaliana BAC T19G15, from chromosome V near 60.5 cM, complete
     sequence.
    HTG.

AC005966    AC005966    89369bp    DNA      HTG      14-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     T2K10 sequence; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC005967    AC005967    59549bp    DNA      HTG      19-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27D4'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005970    AC005970   128217bp    DNA      HTG      19-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6P5'
     genomic sequence near marker 'mi310'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AF082298    AF082298      600bp    mRNA     PLN      17-NOV-1998
    Arabidopsis thaliana arabinogalactan-protein (AGP1) mRNA, complete cds.
    AGP1; arabinogalactan-protein.

AF082299    AF082299      659bp    mRNA     PLN      17-NOV-1998
    Arabidopsis thaliana arabinogalactan-protein (AGP2) mRNA, complete cds.
    AGP2; arabinogalactan-protein.

AF082300    AF082300      737bp    mRNA     PLN      17-NOV-1998
    Arabidopsis thaliana arabinogalactan-protein (AGP3) mRNA, complete cds.
    AGP3; arabinogalactan-protein.

AF082301    AF082301      748bp    mRNA     PLN      17-NOV-1998
    Arabidopsis thaliana arabinogalactan-protein (AGP4) mRNA, complete cds.
    AGP4; arabinogalactan-protein.

AF082302    AF082302      536bp    mRNA     PLN      17-NOV-1998
    Arabidopsis thaliana arabinogalactan-protein (AGP5) mRNA, complete cds.
    AGP5; arabinogalactan-protein.

AF090188    AF090188      333bp    DNA      PLN      19-NOV-1998
    Arabidopsis thaliana ATP-dependent protease proteolytic subunit (clpP)
     gene, promoter region and partial cds.
    clpP; ATP-dependent protease proteolytic subunit.

AF095455    AF095455      844bp    mRNA     PLN      19-NOV-1998
    Arabidopsis thaliana PII protein mRNA, complete cds.
    PII protein.

ATF7K2      AL033545    90933bp    DNA      PLN      17-NOV-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F7K2 (ESSAII project).
    F7K2_10; hypothetical protein (fragment); F7K2_20; hypothetical protein;
     F7K2_30; F7K2_40; extensin like protein; F7K2_50; F7K2_60; putative
     glycine-rich protein; F7K2_70; RCc3- like protein; F7K2_80; putative
     protein; F7K2_90; F7K2_100; F7K2_110; F7K2_120; F7K2_130; F7K2_140;
     F7K2_150; adenine phosphoribosyltransferase (EC 2.4.2.7) - like protein;
     F7K2_160; F7K2_170; trehalose-6-phosphate phosphatase - like protein;
     F7K2_180; F7K2_190; F7K2_200; F7K2_210; F7K2_220; F7K2_230; F7K2_240;
     F7K2_250.

ATH012747   AJ012747     2381bp    mRNA     PLN      18-NOV-1998
    Arabidopsis thaliana mRNA for MLH1 protein, partial.
    MLH1 gene; MLH1 protein; MLH1.

ATH18432    Y18432     4800bp    DNA      PLN      18-NOV-1998
    Arabidopsis thaliana ApL3 gene.
    ADP-glucose pyrophosphorylase large; ADP-glucose pyrophosphorylase; ApL3;
     glucose-1-phosphate adenylyltransferase.

ATU39287    U39287     5303bp    mRNA     PLN      14-NOV-1998
    Arabidopsis thaliana ferredoxin-dependent glutamate synthase precursor
     mRNA, complete cds.
    ferredoxin-dependent glutamate synthase precursor; ferredoxin-dependent
     glutamate synthase.

ATU39288    U39288     5430bp    mRNA     PLN      14-NOV-1998
    Arabidopsis thaliana ferredoxin-dependent glutamate synthase precursor
     mRNA, complete cds.
    ferredoxin-dependent glutamate synthase precursor; ferredoxin-dependent
     glutamate synthase.

ATU92460    U92460     7079bp    DNA      PLN      20-NOV-1998
    Arabidopsis thaliana 12-oxophytodienoate reductase OPR1 and
     12-oxophytodienoate reductase OPR2 genes, complete cds.
    12-oxophytodienoate reductase OPR1; 12-oxophytodienoate reductase OPR2.

==================== Updated DNA Sequences =====================

AC005489    AC005489   100746bp    DNA      PLN      14-NOV-1998
    Genomic sequence for Arabidopsis thaliana BAC F14N23, complete sequence.
    HTG.

AC005851    AC005851    91261bp    DNA      HTG      19-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F24D13'
     genomic sequence near marker 'B68'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005897    AC005897    87119bp    DNA      HTG      17-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T10J7'
     genomic sequence near marker 'mi398'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005917    AC005917   106167bp    DNA      HTG      19-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F3P11'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005936    AC005936    93212bp    DNA      HTG      19-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F5O4'
     genomic sequence near marker 'CIC11A04'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC005623  AC005623    99345bp    DNA      PLN      17-NOV-1998
    Arabidopsis thaliana chromosome II BAC T20P8 genomic sequence, complete
     sequence.
    HTG; T20P8.1; myb-related protein, 3' partial; T20P8.2; T20P8.3; putative
     serine/threonine protein kinase; T20P8.4; alien-like protein; T20P8.5;
     putative cytochrome p450 protein; T20P8.6; T20P8.7; proteasome
     component; T20P8.8; calmodulin; T20P8.9; putative argonaute protein;
     T20P8.10; ethylene-insensitive3-like protein; T20P8.11; receptor-like
     protein kinase; T20P8.12; T20P8.13; T20P8.14; putative bzip protein;
     T20P8.15; T20P8.16; T20P8.17; putative DNA polymerase; T20P8.18;
     T20P8.19.

ATHATL2A    L76926     1471bp    DNA      PLN      17-NOV-1998
    Arabidopsis thaliana putative zinc finger protein gene, complete cds.
    putative zinc finger protein.

=========== Updated Sequence Features/Annotations  =============

AB000093    AB000093     4249bp    DNA      PLN      12-NOV-1998
    Arabidopsis thaliana gene for inorganic phosphate transporter, complete
     cds.
    inorganic phosphate transporter; PHT5.

AC002330    AC002330   113566bp    DNA      PLN      18-NOV-1998
    Arabidopsis thaliana BAC T10P11 from chromosome IV, near 15 cM, complete
     sequence.
    HTG; T10P11.1; predicted protein of unknown function; T10P11.2.2;
     T10P11.3; sulfate transporter; sulfate transporter protein; T10P11.3.1;
     putative glutamate-/aspartate-binding peptide; T10P11.3.2; hypothetical
     protein; T10P11.4; putative zinc finger protein; T10P11.5; putative
     transport protein; T10P11.8; predicted protein destination factor;
     T10P11.9; putative bZIP-like DNA binding protein; T10P11.10; putative
     serine/threonine protein kinase; T10P11.10.1; putative vacuolar ATPase;
     T10P11.11; putative tryptophan synthase alpha 1-like protein; T10P11.12;
     AtMlo-h1; T10P11.13; T10P11.14; predicted NADH dehydrogenase 24 kD
     subunit; T10P11.14.1; putative cullin-like 1 protein; T10P11.15;
     LUMINIDEPENDENS protein; T10P11.16; T10P11.16.1; T10P11.17; T10P11.18;
     Atpm24.1 glutathione S transferase; T10P11.19; putative chloroplast
     outer envelope 86-like protein; T10P11.20; T10P11.21; putative reverse
     transcriptase.

AF031427    AF031427      968bp    mRNA     PLN      18-NOV-1998
    Arabidopsis thaliana Rho-like GTP binding protein (Rop6) mRNA, complete
     cds.
    Rop6; Rho-like GTP binding protein.

AF031428    AF031428     1117bp    mRNA     PLN      18-NOV-1998
    Arabidopsis thaliana Rho-like GTP binding protein (Rop4) mRNA, complete
     cds.
    Rop4; Rho-like GTP binding protein.

AF064082    AF064082     1298bp    DNA      PLN      19-NOV-1998
    Arabidopsis thaliana ROP1 GTPase (ROP1) gene, promoter region.
    ROP1; ROP1 GTPase.

AF076484    AF076484     1490bp    mRNA     PLN      20-NOV-1998
    Arabidopsis thaliana GDP-mannose pyrophosphorylase (GMP1) mRNA, complete
     cds.
    GMP1; GDP-mannose pyrophosphorylase.

AF082391    AF082391     1938bp    DNA      PLN      20-NOV-1998
    Arabidopsis thaliana protein kinase homolog (PK3) gene, complete cds.
    PK3; protein kinase homolog.

AF082882    AF082882      969bp    mRNA     PLN      20-NOV-1998
    Arabidopsis thaliana adenylate kinase (ADK1) mRNA, complete cds.
    ADK1; adenylate kinase.

ATATK1      X79279     5491bp    DNA      PLN      18-NOV-1998
    A.thaliana AtK-1 gene.
    AtK-1 gene; K-1.

ATU49971    U49971      843bp    DNA      PLN      19-NOV-1998
    Arabidopsis thaliana GTP binding protein Rop1At (Rop1At) mRNA, complete
     cds.
    Rop1At; GTP binding protein Rop1At.

ATU49972    U49972      935bp    DNA      PLN      19-NOV-1998
    Arabidopsis thaliana GTP binding protein Rop2At (Rop2At) mRNA, complete
     cds.
    Rop2At; GTP binding protein Rop2At.

ATY15433    Y15433     1520bp    DNA      PLN      17-NOV-1998
    Arabidopsis thaliana psbO gene.
    oxygen-evolving complex; photosystem II; psbO gene; psbO; 33 kDa
     polypeptide of oxygen-evolving complex (OEC) in photosystem II.

MIATGENB    Y08502   166924bp    DNA      circular PLN
    A.thaliana mitochondrial genome, part B.
    18S ribosomal RNA; 26S ribosomal RNA; 5S ribosomal RNA; apocytochrome B;
     atp1 gene; atp6 gene; atp9 gene; ATPase subunit 1; ATPase subunit 6;
     ATPase subunit 9; ccb203 gene; ccb206 gene; ccb256 gene; ccb382 gene;
     ccb452 gene; cob gene; cox1 gene; cox2 gene; cox3 gene; cytochrome c
     biogenesis orf203; cytochrome c biogenesis orf206; cytochrome c
     biogenesis orf256; cytochrome c biogenesis orf382; cytochrome c
     biogenesis orf452; cytochrome c oxidase subunit 1; cytochrome c oxidase
     subunit 2; cytochrome c oxidase subunit 3; matR gene; maturase; nad1
     gene; nad2 gene; nad3 gene; nad4 gene; nad4L gene; nad5 gene; nad6 gene;
     nad7 gene; nad9 gene; NADH dehydrogenase subunit 1; NADH dehydrogenase
     subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4;
     NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH
     dehydrogenase subunit 6; NADH dehydrogenase subunit 7; NADH
     dehydrogenase subunit 9; ORF25; orf25 gene; orfB; orfB gene; orfX gene;
     ribosomal protein L16; ribosomal protein L2; ribosomal protein L5;
     ribosomal protein S12; ribosomal protein S3; ribosomal protein S4;
     ribosomal protein S7; rpl16 gene; rpl2 gene; rpl5 gene; rps12 gene; rps3
     gene; rps4 gene; rps7 gene; rrn18 gene; rrn28 gene; rrn5 gene; transfer
     RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-fMet; transfer
     RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer
     RNA-Ile; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Pro; transfer
     RNA-Ser; transfer RNA-Trp; transfer RNA-Tyr; trnC gene; trnD gene; trnE
     gene; trnfM gene; trnG gene; trnH gene; trnI gene; trnK gene; trnM gene;
     trnN gene; trnP gene; trnQ gene; trnS gene; trnW gene; trnY gene; nad1;
     tRNA-Lys; cox3; tRNA-Ser; tRNA-Tyr; tRNA-Glu; ccb382; ccb256; tRNA-Trp;
     tRNA-Gln; ccb203; rpsl2; nad3; tRNA-Asp; atp9; atp6-2; atp1; rps7; nad2;
     tRNA-met; cox1; rrn5; rrn18.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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