New Arabidopsis DNA 28-Nov-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Nov 28 13:03:42 EST 1998


====================== New DNA Sequences =======================

AB015503    AB015503     1616bp    DNA      PLN      27-NOV-1998
    Arabidopsis himalaica Adh gene for alcohol dehydrogenase, partial cds.
    ADH; Adh; alcohol dehydrogenase.

AB015504    AB015504     1693bp    DNA      PLN      27-NOV-1998
    Arabidopsis griffithiana Adh gene for alcohol dehydrogenase, partial cds.
    ADH; Adh; alcohol dehydrogenase.

AB015505    AB015505     1699bp    DNA      PLN      27-NOV-1998
    Arabidopsis korshinskyi Adh gene for alcohol dehydrogenase, partial cds.
    ADH; Adh; alcohol dehydrogenase.

AB015506    AB015506     1632bp    DNA      PLN      27-NOV-1998
    Arabidopsis wallichii Adh gene for alcohol dehydrogenase, partial cds.
    ADH; Adh; alcohol dehydrogenase.

AB015507    AB015507     1663bp    DNA      PLN      27-NOV-1998
    Arabidopsis suecica Adh gene for alcohol dehydrogenase, partial cds.
    ADH; Adh; alcohol dehydrogenase.

AB016819    AB016819     1687bp    mRNA     PLN      27-NOV-1998
    Arabidopsis thaliana mRNA for UDP-glucose: IAA glucosyltransferase,
     complete cds.
    UDP-glucose: IAA glucosyltransferase.

AB017331    AB017331     4791bp    DNA      PLN      27-NOV-1998
    Arabidopsis thaliana gene for 6-4 photolyase, partial cds.
    6-4 photolyase; UVR3.

AC005990    AC005990   103304bp    DNA      HTG      21-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC F5O8
     sequence; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC006053    AC006053   107510bp    DNA      HTG      25-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F3N11'
     genomic sequence near marker 'B68'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC006067    AC006067   134636bp    DNA      HTG      26-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T13P21'
     genomic sequence near marker 'mi398'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC006068    AC006068   114399bp    DNA      HTG      26-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20F21'
     genomic sequence near marker 've016'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC006069    AC006069    96062bp    DNA      HTG      26-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T8O11'
     genomic sequence near marker 'rga'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AF062924    AF062924      671bp    DNA      PLN      23-NOV-1998
    Arabidopsis thaliana transcriptional activator CBF1 homolog (CBF2) gene,
     complete cds.
    CBF2; transcriptional activator CBF1 homolog.

AF062925    AF062925      671bp    DNA      PLN      23-NOV-1998
    Arabidopsis thaliana transcriptional activator CBF1 homolog (CBF3) gene,
     complete cds.
    CBF3; transcriptional activator CBF1 homolog.

AF067798    AF067798     2374bp    mRNA     PLN      21-NOV-1998
    Arabidopsis thaliana cyclic nucleotide-gated cation channel mRNA,
     complete cds.
    cyclic nucleotide-gated cation channel.

AF068574    AF068574     8700bp    DNA      PLN      25-NOV-1998
    Arabidopsis thaliana ferulate-5-hydroxylase (F5H) gene, complete cds.
    F5H; ferulate-5-hydroxylase.

AF089711    AF089711     6475bp    DNA      PLN      22-NOV-1998
    Arabidopsis thaliana rpp8 gene, complete cds.
    rpp8.

==================== Updated DNA Sequences =====================

AC005698    AC005698    95319bp    DNA      HTG      26-NOV-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T3P18; HTGS phase 2, 2 ordered pieces.
    HTG; HTGS_PHASE2.

AC005724    AC005724    88413bp    DNA      HTG      25-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'MITSUI' P1 'MSF3'
     genomic sequence near marker 'CIC06E08'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005917    AC005917    92822bp    DNA      HTG      21-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F3P11'
     genomic sequence near marker 'CIC06E08'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005956    AC005956   101001bp    DNA      HTG      20-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'MITSUI' P1 'MHK10'
     genomic sequence near marker 'EG05C12'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005957    AC005957   126441bp    DNA      HTG      21-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T15J14'
     genomic sequence near marker 'mi398'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC005967    AC005967   105014bp    DNA      HTG      21-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27D4'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005970    AC005970   128220bp    DNA      HTG      25-NOV-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6P5'
     genomic sequence near marker 'mi310'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC005312  AC005312    74903bp    DNA      PLN      20-NOV-1998
    Arabidopsis thaliana chromosome II BAC T16F16 genomic sequence, complete
     sequence.
    HTG; T16F16.1; putative protein kinase, 3' partial; T16F16.2; similar to
     phloem-specific lectin; T16F16.3; T16F16.4; T16F16.5; T16F16.6;
     T16F16.7; T16F16.8; T16F16.9; T16F16.10; T16F16.11; T16F16.12;
     T16F16.13; T16F16.14; T16F16.15; T16F16.16; T16F16.17; putative
     glutathione s-transferase; T16F16.18; T16F16.19; putative cinnamoyl-CoA
     reductase; T16F16.20; T16F16.21; T16F16.22; T16F16.23; T16F16.24;
     putative NAM (no apical meristem) protein; T16F16.25; T16F16.26;
     putative nucleic acid binding protein.

ATAC005662  AC005662    96066bp    DNA      PLN      20-NOV-1998
    Arabidopsis thaliana chromosome II BAC F13H10 genomic sequence, complete
     sequence.
    HTG; F13H10.1; F13H10.2; ERD15 protein; F13H10.3; F13H10.4;
     calmodulin-like protein; F13H10.5; F13H10.6; F13H10.7; putative
     embryo-abundant protein; F13H10.8; F13H10.9; F13H10.10; F13H10.11;
     putative RNA polymerase; F13H10.12; F13H10.13; F13H10.14; response
     regulator 3; F13H10.15; putative strictosidine synthase; F13H10.16;
     F13H10.17; late-embryogenesis abundant M10 protein; F13H10.18;
     F13H10.19; late-embryogenesis abundant M17 protein; F13H10.20;
     F13H10.21; F13H10.22; F13H10.23; putative ferredoxin-dependent glutamate
     synthase; F13H10.24; phosphatidylinositol-4-phosphate-5-kinase, 5'
     partial.

ATAC005727  AC005727   107097bp    DNA      PLN      25-NOV-1998
    Arabidopsis thaliana chromosome II BAC F8N16 genomic sequence, complete
     sequence.
    HTG; F8N16.1; tRNA-Cys; F8N16.2; histone H4; F8N16.3; F8N16.4; putative
     dTDP-glucose 4-6-dehydratase, partial; F8N16.5; putative dTDP-glucose
     4-6-dehydratase; F8N16.6; tRNA-His; F8N16.7; F8N16.8; osmotin-like
     protein precursor; F8N16.9; chloroplast membrane protein ALBINO3;
     F8N16.10; putative zinc finger protein; F8N16.11; putative alanine
     aminotransferase 2 transaminase 2; F8N16.12; F8N16.13; similar to mouse
     ankyrin 3; F8N16.14; putative cytochrome P450; F8N16.15; F8N16.16;
     F8N16.17; similar to Streptomyces PapA; F8N16.18; F8N16.19; putative
     core protein; F8N16.20; F8N16.21; F8N16.22; putative protein kinase;
     F8N16.23; F8N16.24; expansin AtEx6.

ATAC005770  AC005770    96827bp    DNA      PLN      26-NOV-1998
    Arabidopsis thaliana chromosome II BAC T7F6 genomic sequence, complete
     sequence.
    HTG; T7F6.1; similar to guanylate binding protein, 5' partial; T7F6.2;
     T7F6.3; T7F6.4; putative protease inhibitor; T7F6.5; transcription
     factor; T7F6.6; T7F6.7; T7F6.8; putative protein kinase, calcium
     dependent; T7F6.9; T7F6.10; T7F6.11; phosphate transporter, AtPT2;
     T7F6.12; similar to human XE169 protein; T7F6.13; T7F6.14;
     retrotransposon-like protein; T7F6.15; putative protein kinase; T7F6.16;
     T7F6.17; T7F6.18; putative water channel protein; T7F6.19; T7F6.20;
     T7F6.21; putative peroxidase; T7F6.22; putative osr40; T7F6.23; putative
     MTN3 protein; T7F6.24; T7F6.25; T7F6.26; IVR-like protein; T7F6.27;
     putative zinc finger protein; T7F6.28; T7F6.29; T7F6.30.

=========== Updated Sequence Features/Annotations  =============

AB010690    AB010690     3921bp    DNA      PLN      27-NOV-1998
    Arabidopsis thaliana mutM homologue gene, complete cds.
    alternative splicing; AtMMH-2; AtMMH-1; mutM homologue.

AF069442    AF069442    98913bp    DNA      PLN      24-NOV-1998
    Arabidopsis thaliana BAC T4I9, chromosome IV, near 17 cM, complete
     sequence.
    HTG; T4I9.1; putative ribonucleoprotein; T4I9.2; putative rac GTPase
     activating protein; T4I9.3; predicted protein of unknown function;
     T4I9.4; putative phospho-ser/thr phosphatase; T4I9.5; putative
     oxidoreductase; T4I9.6; T4I9.7; T4I9.8; hypothetical protein; T4I9.9;
     predicted OR23 protein of unknown function; T4I9.10; putative WD-repeat
     protein; T4I9.11; putative leucine-rich repeat protein; T4I9.12;
     putative inhibitor of apoptosis; T4I9.13; T4I9.14; auxin-binding protein
     1 precursor; T4I9.15; putative ubiquitin-like protein; T4I9.16; putative
     polyprotein of LTR transposon; T4I9.17; T4I9.18; T4I9.19; mitochondrial
     elongation factor Tu; T4I9.20; T4I9.21; T4I9.22.

ATAC002342  AC002342    82359bp    DNA      PLN      24-NOV-1998
    Arabidopsis thaliana chromosome V BAC T19K24 genomic sequence, complete
     sequence.
    HTG; T19K24.1; similar to maize transposon MuDR mudrA protein, 3'
     partial; T19K24.2; putative disease resistance protein; T19K24.3;
     T19K24.4; T19K24.5; putative polygalacturonase; T19K24.6; T19K24.7;
     T19K24.8; human Mi-2 autoantigen-like protein; T19K24.9; putative
     Cu2+-transporting ATPase; T19K24.10; T19K24.11; similar to pMS10
     protein; T19K24.12; T19K24.13; putative C2 domain-containing protein;
     T19K24.14; T19K24.15; similar to DNA-damage-inducible protein P;
     T19K24.16; Dreg-2 like protein; T19K24.17.

ATAF001308  AF001308   105654bp    DNA      PLN      23-NOV-1998
    Arabidopsis thaliana BAC T10M13 from chromosome IV short arm, maps at
     11.6 cM, complete sequence.
    HTG; T10M13.1; putative zinc finger protein; T10M13.2; putative NAK-like
     ser/thr protein kinase; T10M13.3; putative curlyleaf-like 1 homeotic
     protein; T10M13.4; hypothetical protein; T10M13.5; T10M13.6; putative
     hexose transporter; tRNA-His; T10M13.7; PROLIFERA; T10M13.8; G/T DNA
     mismatch repair enzyme; T10M13.9; SAR1/GTP-binding secretory factor;
     T10M13.10; T10M13.11; T10M13.12; predicted protein of unknown function;
     T10M13.13; T10M13.14; predicted glycosyl transferase; T10M13.15;
     T10M13.16; AtKAP alpha; T10M13.16.1; T10M13.17; T10M13.17.1; CHP-rich
     hypothetical protein similar to T10M13.18; T10M13.18; CHP-rich
     hypothetical protein similar to T10M13.17.1; T10M13.19; syntaxin-like
     protein; T10M13.20; drought-induced-19-like 1; T10M13.21; T10M13.22.

ATAJ2280    AJ002280     1723bp    mRNA     PLN      24-NOV-1998
    Arabidopsis thaliana mRNA for shaggy-like kinase beta.
    ASKbeta gene; shaggy-like kinase beta; ASKbeta.

ATAJ4338    AJ224338     4813bp    DNA      PLN      24-NOV-1998
    Arabidopsis thaliana ASKbeta gene, complete CDS.
    AKSbeta gene; shaggy-like kinase beta; ASKbeta.

ATHATPK     D10910     4719bp    DNA      PLN      26-NOV-1998
    Arabidopsis thaliana Atpk7 gene for serine/threonine protein kinase,
     complete cds.
    plant protein kinase; serine/threonine protein kinase; Atpk7.

ATHPK5      D10909     4059bp    DNA      PLN      26-NOV-1998
    Arabidopsis thaliana gene for serine/threonine protein kinase, complete
     cds.
    serine/threonine protein kinase.

ATKAPAPRO   Y09511     1978bp    mRNA     PLN      24-NOV-1998
    A.thaliana mRNA for Kap alpha protein.
    Kap alpha protein.

ATM3E9      AL022223    80679bp    DNA      PLN      23-NOV-1998
    Arabidopsis thaliana DNA chromosome 4, P1 clone M3E9 (ESSAII project).
    M3E9.10; putative protein; M3E9.20; M3E9.30; receptor protein kinase -
     like protein; M3E9.40; fructose-bisphosphate aldolase - like protein;
     M3E9.50; fructose-bisphosphate aldolase; M3E9.60; putative uracil
     phosphoribosyl transferase; M3E9.70; M3E9.80; hypothetical protein;
     M3E9.90; M3E9.100; M3E9.110; M3E9.120; M3E9.130; M3E9.140; M3E9.150;
     M3E9.160; M3E9.170; M3E9.180; pyruvate kinase like protein; M3E9.190;
     M3E9.200; M3E9.210.

ATM4I22     AL030978    83371bp    DNA      PLN      24-NOV-1998
    Arabidopsis thaliana DNA chromosome 4, P1 clone M4I22 (ESSAII project).
    M4I22.10; putative protein; M4I22.20; M4I22.30; M4I22.40; histone H2A-
     like protein; M4I22.50; hypothetical protein; M4I22.60; M4I22.70; GH3
     like protein; M4I22.80; M4I22.90; M4I22.100; putative receptor like
     kinase; M4I22.110; putative receptor protein kinase; M4I22.120;
     M4I22.130; M4I22.140; M4I22.150; M4I22.160; M4I22.170; M4I22.180; myosin
     heavy chain - like protein; M4I22.190; M4I22.200; M4I22.210.

ATM7J2      AL022197    80387bp    DNA      PLN      23-NOV-1998
    Arabidopsis thaliana DNA chromosome 4, P1 clone M7J2 (ESSAII project).
    M7J2.10; putative protein; M7J2.20; hypothetical protein; M7J2.30;
     M7J2.40; actin depolymerizing factor - like protein; M7J2.50; M7J2.60;
     M7J2.70; myb - like protein; M7J2.80; M7J2.90; putative DNA mismatch
     repair protein; M7J2.100; putative homeodomain-protein; M7J2.110;
     M7J2.120; M7J2.130; splicing factor At-SRp40; M7J2.140; transcriptional
     activator CBF1; M7J2.150; transcriptional activator CBF1 - like protein;
     M7J2.160; M7J2.170; M7J2.180; M7J2.190; M7J2.200; M7J2.210; gibberellin
     20-oxidase (fragment).

ATPRL1DNA   X82824     5455bp    DNA      PLN      23-NOV-1998
    A.thaliana PRL1 gene.
    PRL1 gene; PRL1.

ATPRL1RNA   X82825     1710bp    mRNA     PLN      23-NOV-1998
    A.thaliana PRL1 mRNA.
    PRL1 gene; PRL1.

ATPRL2RNA   X82826     1672bp    mRNA     PLN      23-NOV-1998
    A.thaliana PRL2 mRNA.
    PRL2 gene; PRL2.

ATSHAGGY    Y07822     2021bp    mRNA     PLN      24-NOV-1998
    A.thaliana mRNA for Shaggy-like kinase tetha.
    serine/threonine protein kinase; Shaggy-like kinase tetha.

ATU39287    U39287     5303bp    mRNA     PLN      21-NOV-1998
    Arabidopsis thaliana ferredoxin-dependent glutamate synthase precursor
     (GLU1) mRNA, complete cds.
    GLU1; ferredoxin-dependent glutamate synthase precursor;
     ferredoxin-dependent glutamate synthase.

ATU39288    U39288     5430bp    mRNA     PLN      21-NOV-1998
    Arabidopsis thaliana ferredoxin-dependent glutamate synthase precursor
     (GLU2) mRNA, complete cds.
    GLU2; ferredoxin-dependent glutamate synthase precursor;
     ferredoxin-dependent glutamate synthase.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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