New Arabidopsis DNA 03-Oct-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Oct 3 16:35:33 EST 1998


====================== New DNA Sequences =======================

AB006777    AB006777     4172bp    DNA      PLN      30-SEP-1998
    Arabidopsis thaliana vsp1 gene for vegetative storage protein, complete
     cds.
    vsp1; vegetative storage protein; Vsp1.

AB006778    AB006778     3790bp    DNA      PLN      30-SEP-1998
    Arabidopsis thaliana Vsp2 gene for vegetative storage protein, complete
     cds.
    vsp2; vegetative storage protein; Vsp2.

AB013815    AB013815     3334bp    DNA      PLN      29-SEP-1998
    Arabidopsis thaliana gene for DREB1A, complete cds.
    DREB1A.

AB013816    AB013816     1396bp    DNA      PLN      29-SEP-1998
    Arabidopsis thaliana gene for DREB1B, complete cds.
    DREB1B.

AB013817    AB013817     2088bp    DNA      PLN      29-SEP-1998
    Arabidopsis thaliana gene for DREB1C, complete cds.
    DREB1C.

AC005724    AC005724   104928bp    DNA      HTG      29-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'P1' BAC 'MSF3'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 14 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005727    AC005727   121567bp    DNA      HTG      30-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F8N16'
     genomic sequence near marker 'mi54'; HTGS phase 1, 20 unordered pieces.
    HTG; HTGS_PHASE1.

AF020715    AF020715     1544bp    mRNA     PLN      28-SEP-1998
    Arabidopsis thaliana histidyl-tRNA synthetase mRNA, complete cds.
    histidyl-tRNA synthetase.

AF047975    AF047975     7403bp    DNA      PLN      02-OCT-1998
    Arabidopsis thaliana putative ethylene receptor (ETR2) gene, complete
     cds.
    ETR2; putative ethylene receptor.

AF047976    AF047976     2441bp    DNA      PLN      02-OCT-1998
    Arabidopsis thaliana putative ethylene receptor (ERS2) gene, complete
     cds.
    ERS2; putative ethylene receptor.

AF091843    AF091843     1485bp    mRNA     PLN      29-SEP-1998
    Arabidopsis thaliana aminoalcoholphosphotransferase (AAPT1) mRNA,
     complete cds.
    AAPT1; aminoalcoholphosphotransferase.

AF091844    AF091844     1314bp    mRNA     PLN      29-SEP-1998
    Arabidopsis thaliana aminoalcoholphosphotransferase (AAPT2) mRNA,
     complete cds.
    AAPT2; aminoalcoholphosphotransferase.

AF092841    AF092841     2657bp    mRNA     PLN      29-SEP-1998
    Arabidopsis thaliana ribonucleoside-diphosphate reductase large subunit
     mRNA, complete cds.
    ribonucleoside-diphosphate reductase large subunit.

AF093241    AF093241     2232bp    mRNA     PLN      29-SEP-1998
    Arabidopsis thaliana putative auxin efflux carrier AGR (AGR) mRNA,
     complete cds.
    AGR; putative auxin efflux carrier AGR.

ATH011577   AJ011577     4551bp    DNA      PLN      24-SEP-1998
    Arabidopsis thaliana SPL1 gene.
    SPL1 gene; squamosa-promoter binding protein like 1; SPL1;
     squamosa-promoter binding protein-like 1.

ATH17969    Y17969     2471bp    DNA      PLN      29-SEP-1998
    Arabidopsis thaliana erg gene.
    erg gene; erg; ERG protein.

ATI134T     AJ001753     1504bp    mRNA     PLN      25-SEP-1998
    Arabidopsis thaliana mRNA for Inositol 1,3,4-Trisphosphate 5/6 Kinase.
    Inositol 1,3,4-Trisphosphate 5/6 Kinase; Inositol 1,3,4-Trisphosphate 5/6
     kinase.

ATSCLAS     AJ001807     1153bp    mRNA     PLN      25-SEP-1998
    Arabidopsis thaliana mRNA for Succinyl-CoA-ligase alpha subunit.
    Succinyl-CoA-ligase; succinyl-CoA-ligase alpha subunit.

ATSCLBS     AJ001808     1546bp    mRNA     PLN      25-SEP-1998
    Arabidopsis thaliana mRNA for Succinyl-CoA-ligase beta subunit.
    Succinyl-CoA-ligase; succinyl-CoA-ligase beta subunit.

ATSDFAS     AJ001809     2247bp    mRNA     PLN      25-SEP-1998
    Arabidopsis thaliana mRNA for Succinate dehydrogenase flavoprotein
     (alpha) subunit.
    succinate dehydrogenase flavoprotein; succinate dehydrogenase
     flavoprotein alpha subunit.

==================== Updated DNA Sequences =====================

AC004450    AC004450    92879bp    DNA      HTG      25-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14B2'
     genomic sequence near marker 'CIC10F02'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC004667  AC004667    91863bp    DNA      PLN      29-SEP-1998
    Arabidopsis thaliana chromosome II BAC T4C15 genomic sequence, complete
     sequence.
    HTG; T4C15.1; T4C15.2; T4C15.3; LEA D113 type2 protein; T4C15.4; T4C15.5;
     T4C15.6; T4C15.7; T4C15.8; putative peptidase; T4C15.9; putative DAL1
     protein; T4C15.10; T4C15.11; tRNA-Met; T4C15.12; T4C15.13; T4C15.14;
     T4C15.15; T4C15.16; T4C15.17; G9a-like protein; T4C15.18; T4C15.19;
     T4C15.20; T4C15.21; putative glycine cleavage system protein H
     precursor; T4C15.22; T4C15.23; T4C15.24; T4C15.25; T4C15.26.

AC005171    AC005171   138181bp    DNA      HTG      29-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4E14'
     genomic sequence near marker 'mi310'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005309    AC005309   106355bp    DNA      HTG      29-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17A22'
     genomic sequence near marker 'CIC06C03'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005311    AC005311    82594bp    DNA      HTG      01-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16B12'
     genomic sequence near marker 'm283'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005388    AC005388    87768bp    DNA      PLN      26-SEP-1998
    Arabidopsis thaliana chromosome 1 BAC T22H22 sequence, complete sequence.
    HTG.

AC005560    AC005560   110379bp    DNA      HTG      25-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F2I9'
     genomic sequence near marker 'rga'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC005698    AC005698    92249bp    DNA      HTG      01-OCT-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T3P18; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC004667  AC004667    91863bp    DNA      PLN      29-SEP-1998
    Arabidopsis thaliana chromosome II BAC T4C15 genomic sequence, complete
     sequence.
    HTG; T4C15.1; T4C15.2; T4C15.3; LEA D113 type2 protein; T4C15.4; T4C15.5;
     T4C15.6; T4C15.7; T4C15.8; putative peptidase; T4C15.9; putative DAL1
     protein; T4C15.10; T4C15.11; tRNA-Met; T4C15.12; T4C15.13; T4C15.14;
     T4C15.15; T4C15.16; T4C15.17; G9a-like protein; T4C15.18; T4C15.19;
     T4C15.20; T4C15.21; putative glycine cleavage system protein H
     precursor; T4C15.22; T4C15.23; T4C15.24; T4C15.25; T4C15.26.

ATAC005169  AC005169   126386bp    DNA      PLN      30-SEP-1998
    Arabidopsis thaliana chromosome II BAC F6F22 genomic sequence, complete
     sequence.
    HTG; F6F22.1; F6F22.2; F6F22.3; putative
     N-acetyl-gamma-glutamyl-phosphate reductase; F6F22.4; F6F22.5; F6F22.6;
     F6F22.7; putative malate dehydrogenase; F6F22.8; F6F22.9; F6F22.10;
     F6F22.11; hexokinase; F6F22.12; F6F22.13; putative copia-like
     transposable element; F6F22.14; F6F22.15; F6F22.16; putative Cys3His
     zinc-finger protein; F6F22.17; F6F22.18; putative clathrin coat assembly
     protein; F6F22.19; extensin-like protein; F6F22.20; profilin 4;
     F6F22.21; profilin 1; F6F22.22; putative ribosomal protein; F6F22.23;
     F6F22.24; F6F22.25; F6F22.26; putative suppressor protein; F6F22.27;
     F6F22.28; F6F22.29; F6F22.30; putative arginine n-methyltransferase;
     F6F22.31.

ATAC005396  AC005396    85214bp    DNA      PLN      25-SEP-1998
    Arabidopsis thaliana chromosome II BAC T26I20 genomic sequence, complete
     sequence.
    HTG; T26I20.1; T26I20.2; putative 22 kDa peroxisomal membrane protein;
     T26I20.3; T26I20.4; T26I20.5; putative proline-rich cell wall protein;
     T26I20.6; gibberellin-regulated protein GAST1-like; T26I20.7; T26I20.8;
     putative flavonol sulfotransferase; T26I20.9; putative reverse
     transcriptase; T26I20.10; T26I20.11; putative transposase; T26I20.12;
     auxin-responsive GH3-like protein; T26I20.13; T26I20.14; putative En/Spm
     transposon protein, 5' partial.

ATHB14      Y11122     5316bp    DNA      PLN      25-SEP-1998
    A.thaliana ATHB-14 gene.
    Athb-14 gene; HD-zip protein; ATHB-14; HD-Zip protein.

ATHB9       Y10922     5213bp    DNA      PLN      29-SEP-1998
    A.thaliana ATHB-9 gene.
    atHB-9 gene; HD-zip protein; transcription factor; ATHB-9; HD-Zip
     protein.

ATSPL3      Y09427      624bp    mRNA     PLN      29-SEP-1998
    A.thaliana mRNA for squamosa-promoter binding protein like 3.
    SPL3 gene; squamosa-promoter binding protein like 3; SPL3.


=========== Updated Sequence Features/Annotations  =============

AB006082    AB006082     1032bp    mRNA     PLN      30-SEP-1998
    Arabidopsis thaliana mRNA for phosphoribosyl-ATP pyrophosphohydrolase,
     complete cds.
    phosphoribosyl-AMPphosphoribosyl-ATP pyrophosphohydrolase; At-IE.

AB006083    AB006083     3176bp    DNA      PLN      30-SEP-1998
    Arabidopsis thaliana gene for phosphoribosyl-ATP pyrophosphohydrolase,
     complete cds.
    phosphoribosyl-ATP pyrophosphohydrolase.

AF012833    AF012833     2685bp    mRNA     PLN      29-SEP-1998
    Arabidopsis thaliana ADL2 mRNA, complete cds.
    ADL2.

AF064542    AF064542     1143bp    mRNA     PLN      30-SEP-1998
    Arabidopsis thaliana protein farnesyltransferase subunit A (FTA) mRNA,
     complete cds.
    FTA; protein farnesyltransferase subunit A.

AF076924    AF076924     1425bp    mRNA     PLN      01-OCT-1998
    Arabidopsis thaliana polypyrimidine tract-binding protein homolog (PTB)
     mRNA, complete cds.
    PTB; polypyrimidine tract-binding protein homolog.

ATAJ3634    AJ223634      702bp    mRNA     PLN      29-SEP-1998
    Arabidopsis thaliana mRNA for transcription factor IIA small subunit.
    small subunit; TFIIA gene; transcription factor IIA; TFIIA-S;
     transcription factor IIA small subunit.

ATAJ3635    AJ223635     1504bp    mRNA     PLN      29-SEP-1998
    Arabidopsis thaliana mRNA for transcription factor IIA large subunit.
    large subunit; TFIIA gene; transcription factor IIA; TFIIA-L;
     transcription factor IIA large subunit; TFIIA_L.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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