New Arabidopsis DNA 03-Oct-1998
AtDB Project
arabidopsis-seq at genome.stanford.edu
Sat Oct 3 16:35:33 EST 1998
====================== New DNA Sequences =======================
AB006777 AB006777 4172bp DNA PLN 30-SEP-1998
Arabidopsis thaliana vsp1 gene for vegetative storage protein, complete
cds.
vsp1; vegetative storage protein; Vsp1.
AB006778 AB006778 3790bp DNA PLN 30-SEP-1998
Arabidopsis thaliana Vsp2 gene for vegetative storage protein, complete
cds.
vsp2; vegetative storage protein; Vsp2.
AB013815 AB013815 3334bp DNA PLN 29-SEP-1998
Arabidopsis thaliana gene for DREB1A, complete cds.
DREB1A.
AB013816 AB013816 1396bp DNA PLN 29-SEP-1998
Arabidopsis thaliana gene for DREB1B, complete cds.
DREB1B.
AB013817 AB013817 2088bp DNA PLN 29-SEP-1998
Arabidopsis thaliana gene for DREB1C, complete cds.
DREB1C.
AC005724 AC005724 104928bp DNA HTG 29-SEP-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'P1' BAC 'MSF3'
genomic sequence near marker 'CIC06E08'; HTGS phase 1, 14 unordered
pieces.
HTG; HTGS_PHASE1.
AC005727 AC005727 121567bp DNA HTG 30-SEP-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F8N16'
genomic sequence near marker 'mi54'; HTGS phase 1, 20 unordered pieces.
HTG; HTGS_PHASE1.
AF020715 AF020715 1544bp mRNA PLN 28-SEP-1998
Arabidopsis thaliana histidyl-tRNA synthetase mRNA, complete cds.
histidyl-tRNA synthetase.
AF047975 AF047975 7403bp DNA PLN 02-OCT-1998
Arabidopsis thaliana putative ethylene receptor (ETR2) gene, complete
cds.
ETR2; putative ethylene receptor.
AF047976 AF047976 2441bp DNA PLN 02-OCT-1998
Arabidopsis thaliana putative ethylene receptor (ERS2) gene, complete
cds.
ERS2; putative ethylene receptor.
AF091843 AF091843 1485bp mRNA PLN 29-SEP-1998
Arabidopsis thaliana aminoalcoholphosphotransferase (AAPT1) mRNA,
complete cds.
AAPT1; aminoalcoholphosphotransferase.
AF091844 AF091844 1314bp mRNA PLN 29-SEP-1998
Arabidopsis thaliana aminoalcoholphosphotransferase (AAPT2) mRNA,
complete cds.
AAPT2; aminoalcoholphosphotransferase.
AF092841 AF092841 2657bp mRNA PLN 29-SEP-1998
Arabidopsis thaliana ribonucleoside-diphosphate reductase large subunit
mRNA, complete cds.
ribonucleoside-diphosphate reductase large subunit.
AF093241 AF093241 2232bp mRNA PLN 29-SEP-1998
Arabidopsis thaliana putative auxin efflux carrier AGR (AGR) mRNA,
complete cds.
AGR; putative auxin efflux carrier AGR.
ATH011577 AJ011577 4551bp DNA PLN 24-SEP-1998
Arabidopsis thaliana SPL1 gene.
SPL1 gene; squamosa-promoter binding protein like 1; SPL1;
squamosa-promoter binding protein-like 1.
ATH17969 Y17969 2471bp DNA PLN 29-SEP-1998
Arabidopsis thaliana erg gene.
erg gene; erg; ERG protein.
ATI134T AJ001753 1504bp mRNA PLN 25-SEP-1998
Arabidopsis thaliana mRNA for Inositol 1,3,4-Trisphosphate 5/6 Kinase.
Inositol 1,3,4-Trisphosphate 5/6 Kinase; Inositol 1,3,4-Trisphosphate 5/6
kinase.
ATSCLAS AJ001807 1153bp mRNA PLN 25-SEP-1998
Arabidopsis thaliana mRNA for Succinyl-CoA-ligase alpha subunit.
Succinyl-CoA-ligase; succinyl-CoA-ligase alpha subunit.
ATSCLBS AJ001808 1546bp mRNA PLN 25-SEP-1998
Arabidopsis thaliana mRNA for Succinyl-CoA-ligase beta subunit.
Succinyl-CoA-ligase; succinyl-CoA-ligase beta subunit.
ATSDFAS AJ001809 2247bp mRNA PLN 25-SEP-1998
Arabidopsis thaliana mRNA for Succinate dehydrogenase flavoprotein
(alpha) subunit.
succinate dehydrogenase flavoprotein; succinate dehydrogenase
flavoprotein alpha subunit.
==================== Updated DNA Sequences =====================
AC004450 AC004450 92879bp DNA HTG 25-SEP-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14B2'
genomic sequence near marker 'CIC10F02'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
ATAC004667 AC004667 91863bp DNA PLN 29-SEP-1998
Arabidopsis thaliana chromosome II BAC T4C15 genomic sequence, complete
sequence.
HTG; T4C15.1; T4C15.2; T4C15.3; LEA D113 type2 protein; T4C15.4; T4C15.5;
T4C15.6; T4C15.7; T4C15.8; putative peptidase; T4C15.9; putative DAL1
protein; T4C15.10; T4C15.11; tRNA-Met; T4C15.12; T4C15.13; T4C15.14;
T4C15.15; T4C15.16; T4C15.17; G9a-like protein; T4C15.18; T4C15.19;
T4C15.20; T4C15.21; putative glycine cleavage system protein H
precursor; T4C15.22; T4C15.23; T4C15.24; T4C15.25; T4C15.26.
AC005171 AC005171 138181bp DNA HTG 29-SEP-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4E14'
genomic sequence near marker 'mi310'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005309 AC005309 106355bp DNA HTG 29-SEP-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17A22'
genomic sequence near marker 'CIC06C03'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005311 AC005311 82594bp DNA HTG 01-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16B12'
genomic sequence near marker 'm283'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005388 AC005388 87768bp DNA PLN 26-SEP-1998
Arabidopsis thaliana chromosome 1 BAC T22H22 sequence, complete sequence.
HTG.
AC005560 AC005560 110379bp DNA HTG 25-SEP-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F2I9'
genomic sequence near marker 'rga'; HTGS phase 1, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC005698 AC005698 92249bp DNA HTG 01-OCT-1998
*** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
BAC T3P18; HTGS phase 1, 5 unordered pieces.
HTG; HTGS_PHASE1.
ATAC004667 AC004667 91863bp DNA PLN 29-SEP-1998
Arabidopsis thaliana chromosome II BAC T4C15 genomic sequence, complete
sequence.
HTG; T4C15.1; T4C15.2; T4C15.3; LEA D113 type2 protein; T4C15.4; T4C15.5;
T4C15.6; T4C15.7; T4C15.8; putative peptidase; T4C15.9; putative DAL1
protein; T4C15.10; T4C15.11; tRNA-Met; T4C15.12; T4C15.13; T4C15.14;
T4C15.15; T4C15.16; T4C15.17; G9a-like protein; T4C15.18; T4C15.19;
T4C15.20; T4C15.21; putative glycine cleavage system protein H
precursor; T4C15.22; T4C15.23; T4C15.24; T4C15.25; T4C15.26.
ATAC005169 AC005169 126386bp DNA PLN 30-SEP-1998
Arabidopsis thaliana chromosome II BAC F6F22 genomic sequence, complete
sequence.
HTG; F6F22.1; F6F22.2; F6F22.3; putative
N-acetyl-gamma-glutamyl-phosphate reductase; F6F22.4; F6F22.5; F6F22.6;
F6F22.7; putative malate dehydrogenase; F6F22.8; F6F22.9; F6F22.10;
F6F22.11; hexokinase; F6F22.12; F6F22.13; putative copia-like
transposable element; F6F22.14; F6F22.15; F6F22.16; putative Cys3His
zinc-finger protein; F6F22.17; F6F22.18; putative clathrin coat assembly
protein; F6F22.19; extensin-like protein; F6F22.20; profilin 4;
F6F22.21; profilin 1; F6F22.22; putative ribosomal protein; F6F22.23;
F6F22.24; F6F22.25; F6F22.26; putative suppressor protein; F6F22.27;
F6F22.28; F6F22.29; F6F22.30; putative arginine n-methyltransferase;
F6F22.31.
ATAC005396 AC005396 85214bp DNA PLN 25-SEP-1998
Arabidopsis thaliana chromosome II BAC T26I20 genomic sequence, complete
sequence.
HTG; T26I20.1; T26I20.2; putative 22 kDa peroxisomal membrane protein;
T26I20.3; T26I20.4; T26I20.5; putative proline-rich cell wall protein;
T26I20.6; gibberellin-regulated protein GAST1-like; T26I20.7; T26I20.8;
putative flavonol sulfotransferase; T26I20.9; putative reverse
transcriptase; T26I20.10; T26I20.11; putative transposase; T26I20.12;
auxin-responsive GH3-like protein; T26I20.13; T26I20.14; putative En/Spm
transposon protein, 5' partial.
ATHB14 Y11122 5316bp DNA PLN 25-SEP-1998
A.thaliana ATHB-14 gene.
Athb-14 gene; HD-zip protein; ATHB-14; HD-Zip protein.
ATHB9 Y10922 5213bp DNA PLN 29-SEP-1998
A.thaliana ATHB-9 gene.
atHB-9 gene; HD-zip protein; transcription factor; ATHB-9; HD-Zip
protein.
ATSPL3 Y09427 624bp mRNA PLN 29-SEP-1998
A.thaliana mRNA for squamosa-promoter binding protein like 3.
SPL3 gene; squamosa-promoter binding protein like 3; SPL3.
=========== Updated Sequence Features/Annotations =============
AB006082 AB006082 1032bp mRNA PLN 30-SEP-1998
Arabidopsis thaliana mRNA for phosphoribosyl-ATP pyrophosphohydrolase,
complete cds.
phosphoribosyl-AMPphosphoribosyl-ATP pyrophosphohydrolase; At-IE.
AB006083 AB006083 3176bp DNA PLN 30-SEP-1998
Arabidopsis thaliana gene for phosphoribosyl-ATP pyrophosphohydrolase,
complete cds.
phosphoribosyl-ATP pyrophosphohydrolase.
AF012833 AF012833 2685bp mRNA PLN 29-SEP-1998
Arabidopsis thaliana ADL2 mRNA, complete cds.
ADL2.
AF064542 AF064542 1143bp mRNA PLN 30-SEP-1998
Arabidopsis thaliana protein farnesyltransferase subunit A (FTA) mRNA,
complete cds.
FTA; protein farnesyltransferase subunit A.
AF076924 AF076924 1425bp mRNA PLN 01-OCT-1998
Arabidopsis thaliana polypyrimidine tract-binding protein homolog (PTB)
mRNA, complete cds.
PTB; polypyrimidine tract-binding protein homolog.
ATAJ3634 AJ223634 702bp mRNA PLN 29-SEP-1998
Arabidopsis thaliana mRNA for transcription factor IIA small subunit.
small subunit; TFIIA gene; transcription factor IIA; TFIIA-S;
transcription factor IIA small subunit.
ATAJ3635 AJ223635 1504bp mRNA PLN 29-SEP-1998
Arabidopsis thaliana mRNA for transcription factor IIA large subunit.
large subunit; TFIIA gene; transcription factor IIA; TFIIA-L;
transcription factor IIA large subunit; TFIIA_L.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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