New Arabidopsis DNA 10-Oct-1998
AtDB Project
arabidopsis-seq at genome.stanford.edu
Mon Oct 12 11:25:47 EST 1998
====================== New DNA Sequences =======================
A58824 A58824 9763bp DNA PAT 06-MAR-1998
Sequence 1 from Patent WO9638560.
A58825 A58825 5113bp DNA PAT 06-MAR-1998
Sequence 2 from Patent WO9638560.
A58833 A58833 22bp DNA PAT 06-MAR-1998
Sequence 10 from Patent WO9638560.
A58835 A58835 21bp DNA PAT 06-MAR-1998
Sequence 12 from Patent WO9638560.
A58836 A58836 28bp DNA PAT 06-MAR-1998
Sequence 13 from Patent WO9638560.
A58837 A58837 20bp DNA PAT 06-MAR-1998
Sequence 14 from Patent WO9638560.
A58838 A58838 17bp DNA PAT 06-MAR-1998
Sequence 15 from Patent WO9638560.
A58840 A58840 20bp DNA PAT 06-MAR-1998
Sequence 17 from Patent WO9638560.
A58842 A58842 17bp DNA PAT 06-MAR-1998
Sequence 19 from Patent WO9638560.
A58843 A58843 17bp DNA PAT 06-MAR-1998
Sequence 20 from Patent WO9638560.
A58844 A58844 22bp DNA PAT 06-MAR-1998
Sequence 21 from Patent WO9638560.
A58845 A58845 19bp DNA PAT 06-MAR-1998
Sequence 22 from Patent WO9638560.
A58846 A58846 17bp DNA PAT 06-MAR-1998
Sequence 23 from Patent WO9638560.
A58847 A58847 20bp DNA PAT 06-MAR-1998
Sequence 24 from Patent WO9638560.
A58848 A58848 20bp DNA PAT 06-MAR-1998
Sequence 25 from Patent WO9638560.
A59349 A59349 418bp DNA PAT 06-MAR-1998
Sequence 6 from Patent WO9704114.
A59350 A59350 494bp DNA PAT 06-MAR-1998
Sequence 7 from Patent WO9704114.
A59869 A59869 1631bp DNA PAT 06-MAR-1998
Sequence 1 from Patent WO9706269.
A61530 A61530 668bp DNA PAT 09-MAR-1998
Sequence 4 from Patent WO9710339.
A61532 A61532 1430bp DNA PAT 09-MAR-1998
Sequence 6 from Patent WO9710339.
A62673 A62673 4464bp DNA PAT 12-MAR-1998
Sequence 10 from Patent WO9718310.
A62679 A62679 80bp DNA PAT 12-MAR-1998
Sequence 16 from Patent WO9718310.
A62680 A62680 80bp DNA PAT 12-MAR-1998
Sequence 17 from Patent WO9718310.
A62681 A62681 80bp DNA PAT 12-MAR-1998
Sequence 18 from Patent WO9718310.
A63187 A63187 1713bp DNA PAT 12-MAR-1998
Sequence 1 from Patent EP0776973.
A63188 A63188 2133bp DNA PAT 12-MAR-1998
Sequence 2 from Patent EP0776973.
A63190 A63190 1644bp DNA PAT 12-MAR-1998
Sequence 4 from Patent EP0776973.
A64192 A64192 604bp DNA PAT 02-JUN-1998
Sequence 3 from Patent WO9725433.
A64193 A64193 889bp DNA PAT 02-JUN-1998
Sequence 4 from Patent WO9725433.
AB005902 AB005902 2775bp mRNA PLN 07-OCT-1998
Arabidopsis thaliana mRNA for AtPIP5K1, complete cds.
AtPIP5K1.
AB018107 AB018107 78874bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone: K12B20; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018108 AB018108 40251bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone: K14B20; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018109 AB018109 81293bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone: K17N15; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018110 AB018110 42563bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone: K19M13; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018111 AB018111 29292bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone: K2A11; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018112 AB018112 70475bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MAB16; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018113 AB018113 85020bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MFC19; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018114 AB018114 84702bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MGF10; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018115 AB018115 31827bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MJP23; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018116 AB018116 46872bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MNB8; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018117 AB018117 88398bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MQL5; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018118 AB018118 50700bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MRI1; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018119 AB018119 62927bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MSN2; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018120 AB018120 42356bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MWJ3; HTGS phase 2.
HTG; HTGS_PHASE2.
AB018121 AB018121 86854bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 3, P1 clone: MXE2; HTGS phase 2.
HTG; HTGS_PHASE2.
AC005770 AC005770 105037bp DNA HTG 03-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T7F6'
genomic sequence near marker 'CIC10A06'; HTGS phase 1, 6 unordered
pieces.
HTG; HTGS_PHASE1.
AF005158 AF005158 1016bp mRNA PLN 08-OCT-1998
Arabidopsis thaliana MADS-box Protein (AGL24) mRNA, complete cds.
AGL24; MADS-box Protein.
AF005159 AF005159 2835bp DNA PLN 08-OCT-1998
Arabidopsis thaliana MADS-box protein (AGL24) gene, complete cds.
AGL24; MADS-box protein.
AF055847 AF055847 615bp mRNA PLN 06-OCT-1998
Arabidopsis thaliana AIR1 mRNA, partial cds.
AIR1.
AF055848 AF055848 2403bp mRNA PLN 06-OCT-1998
Arabidopsis thaliana subtilisin-like protease (AIR3) mRNA, partial cds.
AIR3; subtilisin-like protease.
AF055849 AF055849 1025bp mRNA PLN 06-OCT-1998
Arabidopsis thaliana hypothetical protein (AIR9) mRNA, partial cds.
AIR9; hypothetical protein.
AF055850 AF055850 974bp mRNA PLN 06-OCT-1998
Arabidopsis thaliana AIR12 mRNA, partial cds.
AIR12.
AF057137 AF057137 1035bp mRNA PLN 03-OCT-1998
Arabidopsis thaliana gamma tonoplast intrinsic protein 2 (TIP2) mRNA,
complete cds.
TIP2; gamma tonoplast intrinsic protein 2.
AF060481 AF060481 1534bp DNA PLN 04-OCT-1998
Arabidopsis thaliana p-hydroxyphenylpyruvate dioxygenase (pds1) gene,
complete cds.
pds1; p-hydroxyphenylpyruvate dioxygenase.
AF079484 AF079484 1090bp mRNA PLN 07-OCT-1998
Arabidopsis thaliana rac GTP binding protein Arac7 (Arac7) mRNA, complete
cds.
Arac7; rac GTP binding protein Arac7.
AF079485 AF079485 794bp mRNA PLN 07-OCT-1998
Arabidopsis thaliana rac GTP binding protein Arac10 (Arac10) mRNA,
complete cds.
Arac10; rac GTP binding protein Arac10.
AF079486 AF079486 869bp mRNA PLN 07-OCT-1998
Arabidopsis thaliana rac GTP binding protein Arac8 (Arac8) mRNA, complete
cds.
Arac8; rac GTP binding protein Arac8.
ATA005901 AJ005901 528bp mRNA PLN 06-OCT-1998
Arabidopsis thaliana mRNA for V-ATPase subunit G (vag1 gene).
vag1 gene; vag1.
ATA005902 AJ005902 716bp mRNA PLN 06-OCT-1998
Arabidopsis thaliana mRNA for V-ATPase subunit G (vag2 gene).
vag2 gene; vag2.
ATCAPZA AJ001855 1136bp mRNA PLN 05-OCT-1998
Arabidopsis thaliana mRNA for alpha subunit of F-actin capping protein
(CAPZ alpha).
alpha subunit; CAPZ alpha gene; F-actin capping protein; CAPZ alpha;
alpha subunit of F-actin capping protein.
ATF26P21 AL031804 94482bp DNA PLN 01-OCT-1998
Arabidopsis thaliana DNA chromosome 4, BAC clone F26P21 (ESSAII project).
F26P21.10; putative protein; F26P21.20; F26P21.30; F26P21.40; F26P21.50;
F26P21.60; gamma-VPE (vacuolar processing enzyme); F26P21.70; F26P21.80;
F26P21.90; F26P21.100; homeobox gene ATH1; F26P21.110; F26P21.120;
putative protein (fragment); F26P21.130; P-Protein - like protein;
F26P21.140; F26P21.150; sulfolipid biosynthesis protein SQD1;
F26P21.160; F26P21.170; F26P21.180; F26P21.190; pyruvate decarboxylase-1
(Pdc1); F26P21.200; putative protein kinase.
ATH010090 AJ010090 2189bp mRNA PLN 01-OCT-1998
Arabidopsis thaliana mRNA for MAP3K alpha protein kinase.
MAP3K alpha gene; MAP3K alpha protein kinase; MAP3K alpha.
ATH010092 AJ010092 1786bp mRNA PLN 01-OCT-1998
Arabidopsis thaliana mRNA for MAP3K beta 3 protein kinase, partial.
MAP3K beta 3 gene; MAP3K beta 3 protein kinase; MAP3K beta 3.
ATH9671 AJ009671 4191bp DNA PLN 01-OCT-1998
Arabidopsis thaliana gene encoding putative kinase, partial.
kinase; putative; putative kinase.
ATH9672 AJ009672 719bp mRNA PLN 01-OCT-1998
Arabidopsis thaliana mRNA for centrin.
caltractin; centrin.
ATU97020 U97020 797bp mRNA PLN 08-OCT-1998
Arabidopsis thaliana UFO binding protein UIP1 mRNA, complete cds.
UIP1.
ATU97021 U97021 823bp mRNA PLN 08-OCT-1998
Arabidopsis thaliana UFO binding protein UIP2 mRNA, partial cds.
UIP2.
F11O4 AF096370 72872bp DNA PLN 06-OCT-1998
Arabidopsis thaliana BAC F11O4.
F11O4.7; F11O4.6; F11O4.5; F11O4.4; F11O4.8; F11O4.3; F11O4.2; F11O4.9;
F11O4.11; F11O4.12; F11O4.1; F11O4.13; F11O4.14.
T2L5 AF096371 77905bp DNA PLN 06-OCT-1998
Arabidopsis thaliana BAC T2L5.
T2L5.4; T2L5.5; T2L5.1; T2L5.6; T2L5.7; T2L5.8; T2L5.9.
T5H22 AF096372 69752bp DNA PLN 06-OCT-1998
Arabidopsis thaliana BAC T5H22.
T5H22.2; T5H22.1; T5H22.3; T5H22.4; T5H22.5.
T9A4 AF096373 83922bp DNA PLN 06-OCT-1998
Arabidopsis thaliana BAC T9A4.
T9A4.4; T9A4.5; T9A4.6; T9A4.3; T9A4.7; T9A4.2; T9A4.8; T9A4.9; T9A4.10;
T9A4.11; T9A4.12; DET1; Arabidopsis thaliana light-mediated development
protein DET1 (SP:P48732); T9A4.1; T9A4.14.
==================== Updated DNA Sequences =====================
AC005287 AC005287 144545bp DNA HTG 03-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
F20D21 genomic sequence; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005499 AC005499 145750bp DNA HTG 06-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6A23'
genomic sequence near marker 've018'; HTGS phase 1, 10 unordered pieces.
HTG; HTGS_PHASE1.
AC005508 AC005508 85372bp DNA HTG 03-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
T2P11 genomic sequence; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005561 AC005561 97972bp DNA HTG 03-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9F8'
genomic sequence near marker 'mi310'; HTGS phase 1, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC005617 AC005617 53882bp DNA HTG 02-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T30L20'
genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005623 AC005623 106374bp DNA HTG 02-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20P8'
genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC005662 AC005662 104508bp DNA HTG 02-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13H10'
genomic sequence near marker 'CIC11C08'; HTGS phase 1, 3 unordered
pieces.
HTG; HTGS_PHASE1.
AC005693 AC005693 88274bp DNA HTG 07-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T25N22'
genomic sequence near marker 'mi310'; HTGS phase 1, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC005698 AC005698 93188bp DNA HTG 03-OCT-1998
*** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
BAC T3P18; HTGS phase 1, 4 unordered pieces.
HTG; HTGS_PHASE1.
AC005724 AC005724 105716bp DNA HTG 03-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'P1' BAC 'MSF3'
genomic sequence near marker 'CIC06E08'; HTGS phase 1, 4 unordered
pieces.
HTG; HTGS_PHASE1.
ATAC005397 AC005397 110149bp DNA PLN 06-OCT-1998
Arabidopsis thaliana chromosome II BAC T3F17 genomic sequence, complete
sequence.
HTG; T3F17.1; putative Cop1 protein, 5' partial; T3F17.2; T3F17.3;
putative mitochondrial carrier protein; T3F17.4; putative Ap2 domain
protein; T3F17.5; T3F17.6; putative TGF-beta receptor interacting
protein; T3F17.7; T3F17.8; G-box binding factor; T3F17.9; T3F17.10;
T3F17.11; T3F17.12; T3F17.13; T3F17.14; putative cytochrome b5;
T3F17.15; T3F17.16; T3F17.17; T3F17.18; T3F17.19; T3F17.20; T3F17.21;
putative desiccation protectant protein; T3F17.22; putative DNA binding
protein; T3F17.23; tRNA-Glu; T3F17.24; putative 3-methyl-2-oxobutanoate
hydroxy-methyl-transferase; T3F17.25; T3F17.26; T3F17.27; T3F17.28;
putative protein kinase; T3F17.29; T3F17.30; T3F17.31; T3F17.32;
ubiquitin-protein ligase; T3F17.33; putative homeotic gene regulator;
T3F17.34; T3F17.35; T3F17.36; T3F17.37; putative permease; T3F17.38;
putative cytochrome P450, 3' partial.
=========== Updated Sequence Features/Annotations =============
ATAC002535 AC002535 98937bp DNA PLN 06-OCT-1998
Arabidopsis thaliana chromosome II BAC T30B22 genomic sequence, complete
sequence.
HTG; T30B22.1; T30B22.2; putative pectinesterase; T30B22.3; T30B22.4;
putative dTDP-glucose 4-6-dehydratase; T30B22.5; putative small nuclear
ribonucleoprotein, Sm D2; T30B22.6; putative lysophospholipase;
T30B22.7; similar to SWI/SNF complex subunit BAF170; T30B22.8; putative
ribosomal protein L7A; T30B22.10; putative Na+/Ca2+ exchanger;
T30B22.11; putative photolyase/blue-light receptor; T30B22.12;
U1snRNP-specific protein, U1A; T30B22.13; ribosomal protein L18-like;
T30B22.14; T30B22.15; T30B22.16; T30B22.17; T30B22.18; putative AP2
domain containing protein; T30B22.19; putative fumarase; T30B22.20;
kinesin-like protein, heavy chain; T30B22.21; T30B22.22; T30B22.23;
putative protein disulfide-isomerase precursor; T30B22.24; putative
MYB-related transcription factor (protein P); T30B22.25; T30B22.26;
T30B22.27; histidine kinase homolog; T30B22.28; putative
dimethyladenosine transferase; T30B22.29; putative G-beta-repeat
containing protein, 5' partial.
CHATMTS Y13943 2110bp mRNA PLN 02-OCT-1998
Arabidopsis thaliana mRNA for chloroplast and mitochondrial
methionyl-tRNA synthetase.
methionyl-tRNA synthetase; AtcpMetRS; MEtRS.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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