New Arabidopsis DNA 10-Oct-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon Oct 12 11:25:47 EST 1998


====================== New DNA Sequences =======================

A58824      A58824     9763bp    DNA      PAT      06-MAR-1998
    Sequence 1 from Patent WO9638560.

A58825      A58825     5113bp    DNA      PAT      06-MAR-1998
    Sequence 2 from Patent WO9638560.

A58833      A58833       22bp    DNA      PAT      06-MAR-1998
    Sequence 10 from Patent WO9638560.

A58835      A58835       21bp    DNA      PAT      06-MAR-1998
    Sequence 12 from Patent WO9638560.

A58836      A58836       28bp    DNA      PAT      06-MAR-1998
    Sequence 13 from Patent WO9638560.

A58837      A58837       20bp    DNA      PAT      06-MAR-1998
    Sequence 14 from Patent WO9638560.

A58838      A58838       17bp    DNA      PAT      06-MAR-1998
    Sequence 15 from Patent WO9638560.

A58840      A58840       20bp    DNA      PAT      06-MAR-1998
    Sequence 17 from Patent WO9638560.

A58842      A58842       17bp    DNA      PAT      06-MAR-1998
    Sequence 19 from Patent WO9638560.

A58843      A58843       17bp    DNA      PAT      06-MAR-1998
    Sequence 20 from Patent WO9638560.

A58844      A58844       22bp    DNA      PAT      06-MAR-1998
    Sequence 21 from Patent WO9638560.

A58845      A58845       19bp    DNA      PAT      06-MAR-1998
    Sequence 22 from Patent WO9638560.

A58846      A58846       17bp    DNA      PAT      06-MAR-1998
    Sequence 23 from Patent WO9638560.

A58847      A58847       20bp    DNA      PAT      06-MAR-1998
    Sequence 24 from Patent WO9638560.

A58848      A58848       20bp    DNA      PAT      06-MAR-1998
    Sequence 25 from Patent WO9638560.

A59349      A59349      418bp    DNA      PAT      06-MAR-1998
    Sequence 6 from Patent WO9704114.

A59350      A59350      494bp    DNA      PAT      06-MAR-1998
    Sequence 7 from Patent WO9704114.

A59869      A59869     1631bp    DNA      PAT      06-MAR-1998
    Sequence 1 from Patent WO9706269.

A61530      A61530      668bp    DNA      PAT      09-MAR-1998
    Sequence 4 from Patent WO9710339.

A61532      A61532     1430bp    DNA      PAT      09-MAR-1998
    Sequence 6 from Patent WO9710339.

A62673      A62673     4464bp    DNA      PAT      12-MAR-1998
    Sequence 10 from Patent WO9718310.

A62679      A62679       80bp    DNA      PAT      12-MAR-1998
    Sequence 16 from Patent WO9718310.

A62680      A62680       80bp    DNA      PAT      12-MAR-1998
    Sequence 17 from Patent WO9718310.

A62681      A62681       80bp    DNA      PAT      12-MAR-1998
    Sequence 18 from Patent WO9718310.

A63187      A63187     1713bp    DNA      PAT      12-MAR-1998
    Sequence 1 from Patent EP0776973.

A63188      A63188     2133bp    DNA      PAT      12-MAR-1998
    Sequence 2 from Patent EP0776973.

A63190      A63190     1644bp    DNA      PAT      12-MAR-1998
    Sequence 4 from Patent EP0776973.

A64192      A64192      604bp    DNA      PAT      02-JUN-1998
    Sequence 3 from Patent WO9725433.

A64193      A64193      889bp    DNA      PAT      02-JUN-1998
    Sequence 4 from Patent WO9725433.

AB005902    AB005902     2775bp    mRNA     PLN      07-OCT-1998
    Arabidopsis thaliana mRNA for AtPIP5K1, complete cds.
    AtPIP5K1.

AB018107    AB018107    78874bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, TAC clone: K12B20; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018108    AB018108    40251bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, TAC clone: K14B20; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018109    AB018109    81293bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, TAC clone: K17N15; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018110    AB018110    42563bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, TAC clone: K19M13; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018111    AB018111    29292bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, TAC clone: K2A11; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018112    AB018112    70475bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MAB16; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018113    AB018113    85020bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MFC19; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018114    AB018114    84702bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 3, P1 clone: MGF10; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018115    AB018115    31827bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MJP23; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018116    AB018116    46872bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MNB8; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018117    AB018117    88398bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MQL5; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018118    AB018118    50700bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MRI1; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018119    AB018119    62927bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MSN2; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018120    AB018120    42356bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MWJ3; HTGS phase 2.
    HTG; HTGS_PHASE2.

AB018121    AB018121    86854bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 3, P1 clone: MXE2; HTGS phase 2.
    HTG; HTGS_PHASE2.

AC005770    AC005770   105037bp    DNA      HTG      03-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T7F6'
     genomic sequence near marker 'CIC10A06'; HTGS phase 1, 6 unordered
     pieces.
    HTG; HTGS_PHASE1.

AF005158    AF005158     1016bp    mRNA     PLN      08-OCT-1998
    Arabidopsis thaliana MADS-box Protein (AGL24) mRNA, complete cds.
    AGL24; MADS-box Protein.

AF005159    AF005159     2835bp    DNA      PLN      08-OCT-1998
    Arabidopsis thaliana MADS-box protein (AGL24) gene, complete cds.
    AGL24; MADS-box protein.

AF055847    AF055847      615bp    mRNA     PLN      06-OCT-1998
    Arabidopsis thaliana AIR1 mRNA, partial cds.
    AIR1.

AF055848    AF055848     2403bp    mRNA     PLN      06-OCT-1998
    Arabidopsis thaliana subtilisin-like protease (AIR3) mRNA, partial cds.
    AIR3; subtilisin-like protease.

AF055849    AF055849     1025bp    mRNA     PLN      06-OCT-1998
    Arabidopsis thaliana hypothetical protein (AIR9) mRNA, partial cds.
    AIR9; hypothetical protein.

AF055850    AF055850      974bp    mRNA     PLN      06-OCT-1998
    Arabidopsis thaliana AIR12 mRNA, partial cds.
    AIR12.

AF057137    AF057137     1035bp    mRNA     PLN      03-OCT-1998
    Arabidopsis thaliana gamma tonoplast intrinsic protein 2 (TIP2) mRNA,
     complete cds.
    TIP2; gamma tonoplast intrinsic protein 2.

AF060481    AF060481     1534bp    DNA      PLN      04-OCT-1998
    Arabidopsis thaliana p-hydroxyphenylpyruvate dioxygenase (pds1) gene,
     complete cds.
    pds1; p-hydroxyphenylpyruvate dioxygenase.

AF079484    AF079484     1090bp    mRNA     PLN      07-OCT-1998
    Arabidopsis thaliana rac GTP binding protein Arac7 (Arac7) mRNA, complete
     cds.
    Arac7; rac GTP binding protein Arac7.

AF079485    AF079485      794bp    mRNA     PLN      07-OCT-1998
    Arabidopsis thaliana rac GTP binding protein Arac10 (Arac10) mRNA,
     complete cds.
    Arac10; rac GTP binding protein Arac10.

AF079486    AF079486      869bp    mRNA     PLN      07-OCT-1998
    Arabidopsis thaliana rac GTP binding protein Arac8 (Arac8) mRNA, complete
     cds.
    Arac8; rac GTP binding protein Arac8.

ATA005901   AJ005901      528bp    mRNA     PLN      06-OCT-1998
    Arabidopsis thaliana mRNA for V-ATPase subunit G (vag1 gene).
    vag1 gene; vag1.

ATA005902   AJ005902      716bp    mRNA     PLN      06-OCT-1998
    Arabidopsis thaliana mRNA for V-ATPase subunit G (vag2 gene).
    vag2 gene; vag2.

ATCAPZA     AJ001855     1136bp    mRNA     PLN      05-OCT-1998
    Arabidopsis thaliana mRNA for alpha subunit of F-actin capping protein
     (CAPZ alpha).
    alpha subunit; CAPZ alpha gene; F-actin capping protein; CAPZ alpha;
     alpha subunit of F-actin capping protein.

ATF26P21    AL031804    94482bp    DNA      PLN      01-OCT-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F26P21 (ESSAII project).
    F26P21.10; putative protein; F26P21.20; F26P21.30; F26P21.40; F26P21.50;
     F26P21.60; gamma-VPE (vacuolar processing enzyme); F26P21.70; F26P21.80;
     F26P21.90; F26P21.100; homeobox gene ATH1; F26P21.110; F26P21.120;
     putative protein (fragment); F26P21.130; P-Protein - like protein;
     F26P21.140; F26P21.150; sulfolipid biosynthesis protein SQD1;
     F26P21.160; F26P21.170; F26P21.180; F26P21.190; pyruvate decarboxylase-1
     (Pdc1); F26P21.200; putative protein kinase.

ATH010090   AJ010090     2189bp    mRNA     PLN      01-OCT-1998
    Arabidopsis thaliana mRNA for MAP3K alpha protein kinase.
    MAP3K alpha gene; MAP3K alpha protein kinase; MAP3K alpha.

ATH010092   AJ010092     1786bp    mRNA     PLN      01-OCT-1998
    Arabidopsis thaliana mRNA for MAP3K beta 3 protein kinase, partial.
    MAP3K beta 3 gene; MAP3K beta 3 protein kinase; MAP3K beta 3.

ATH9671     AJ009671     4191bp    DNA      PLN      01-OCT-1998
    Arabidopsis thaliana gene encoding putative kinase, partial.
    kinase; putative; putative kinase.

ATH9672     AJ009672      719bp    mRNA     PLN      01-OCT-1998
    Arabidopsis thaliana mRNA for centrin.
    caltractin; centrin.

ATU97020    U97020      797bp    mRNA     PLN      08-OCT-1998
    Arabidopsis thaliana UFO binding protein UIP1 mRNA, complete cds.
    UIP1.

ATU97021    U97021      823bp    mRNA     PLN      08-OCT-1998
    Arabidopsis thaliana UFO binding protein UIP2 mRNA, partial cds.
    UIP2.

F11O4       AF096370    72872bp    DNA      PLN      06-OCT-1998
    Arabidopsis thaliana BAC F11O4.
    F11O4.7; F11O4.6; F11O4.5; F11O4.4; F11O4.8; F11O4.3; F11O4.2; F11O4.9;
     F11O4.11; F11O4.12; F11O4.1; F11O4.13; F11O4.14.

T2L5        AF096371    77905bp    DNA      PLN      06-OCT-1998
    Arabidopsis thaliana BAC T2L5.
    T2L5.4; T2L5.5; T2L5.1; T2L5.6; T2L5.7; T2L5.8; T2L5.9.

T5H22       AF096372    69752bp    DNA      PLN      06-OCT-1998
    Arabidopsis thaliana BAC T5H22.
    T5H22.2; T5H22.1; T5H22.3; T5H22.4; T5H22.5.

T9A4        AF096373    83922bp    DNA      PLN      06-OCT-1998
    Arabidopsis thaliana BAC T9A4.
    T9A4.4; T9A4.5; T9A4.6; T9A4.3; T9A4.7; T9A4.2; T9A4.8; T9A4.9; T9A4.10;
     T9A4.11; T9A4.12; DET1; Arabidopsis thaliana light-mediated development
     protein DET1 (SP:P48732); T9A4.1; T9A4.14.

==================== Updated DNA Sequences =====================

AC005287    AC005287   144545bp    DNA      HTG      03-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     F20D21 genomic sequence; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005499    AC005499   145750bp    DNA      HTG      06-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6A23'
     genomic sequence near marker 've018'; HTGS phase 1, 10 unordered pieces.
    HTG; HTGS_PHASE1.

AC005508    AC005508    85372bp    DNA      HTG      03-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     T2P11 genomic sequence; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005561    AC005561    97972bp    DNA      HTG      03-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9F8'
     genomic sequence near marker 'mi310'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC005617    AC005617    53882bp    DNA      HTG      02-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T30L20'
     genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005623    AC005623   106374bp    DNA      HTG      02-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20P8'
     genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC005662    AC005662   104508bp    DNA      HTG      02-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13H10'
     genomic sequence near marker 'CIC11C08'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005693    AC005693    88274bp    DNA      HTG      07-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T25N22'
     genomic sequence near marker 'mi310'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC005698    AC005698    93188bp    DNA      HTG      03-OCT-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T3P18; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC005724    AC005724   105716bp    DNA      HTG      03-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'P1' BAC 'MSF3'
     genomic sequence near marker 'CIC06E08'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

ATAC005397  AC005397   110149bp    DNA      PLN      06-OCT-1998
    Arabidopsis thaliana chromosome II BAC T3F17 genomic sequence, complete
     sequence.
    HTG; T3F17.1; putative Cop1 protein, 5' partial; T3F17.2; T3F17.3;
     putative mitochondrial carrier protein; T3F17.4; putative Ap2 domain
     protein; T3F17.5; T3F17.6; putative TGF-beta receptor interacting
     protein; T3F17.7; T3F17.8; G-box binding factor; T3F17.9; T3F17.10;
     T3F17.11; T3F17.12; T3F17.13; T3F17.14; putative cytochrome b5;
     T3F17.15; T3F17.16; T3F17.17; T3F17.18; T3F17.19; T3F17.20; T3F17.21;
     putative desiccation protectant protein; T3F17.22; putative DNA binding
     protein; T3F17.23; tRNA-Glu; T3F17.24; putative 3-methyl-2-oxobutanoate
     hydroxy-methyl-transferase; T3F17.25; T3F17.26; T3F17.27; T3F17.28;
     putative protein kinase; T3F17.29; T3F17.30; T3F17.31; T3F17.32;
     ubiquitin-protein ligase; T3F17.33; putative homeotic gene regulator;
     T3F17.34; T3F17.35; T3F17.36; T3F17.37; putative permease; T3F17.38;
     putative cytochrome P450, 3' partial.

=========== Updated Sequence Features/Annotations  =============

ATAC002535  AC002535    98937bp    DNA      PLN      06-OCT-1998
    Arabidopsis thaliana chromosome II BAC T30B22 genomic sequence, complete
     sequence.
    HTG; T30B22.1; T30B22.2; putative pectinesterase; T30B22.3; T30B22.4;
     putative dTDP-glucose 4-6-dehydratase; T30B22.5; putative small nuclear
     ribonucleoprotein, Sm D2; T30B22.6; putative lysophospholipase;
     T30B22.7; similar to SWI/SNF complex subunit BAF170; T30B22.8; putative
     ribosomal protein L7A; T30B22.10; putative Na+/Ca2+ exchanger;
     T30B22.11; putative photolyase/blue-light receptor; T30B22.12;
     U1snRNP-specific protein, U1A; T30B22.13; ribosomal protein L18-like;
     T30B22.14; T30B22.15; T30B22.16; T30B22.17; T30B22.18; putative AP2
     domain containing protein; T30B22.19; putative fumarase; T30B22.20;
     kinesin-like protein, heavy chain; T30B22.21; T30B22.22; T30B22.23;
     putative protein disulfide-isomerase precursor; T30B22.24; putative
     MYB-related transcription factor (protein P); T30B22.25; T30B22.26;
     T30B22.27; histidine kinase homolog; T30B22.28; putative
     dimethyladenosine transferase; T30B22.29; putative G-beta-repeat
     containing protein, 5' partial.

CHATMTS     Y13943     2110bp    mRNA     PLN      02-OCT-1998
    Arabidopsis thaliana mRNA for chloroplast and mitochondrial
     methionyl-tRNA synthetase.
    methionyl-tRNA synthetase; AtcpMetRS; MEtRS.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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