New Arabidopsis DNA 18-Oct-1998
AtDB Project
arabidopsis-seq at genome.stanford.edu
Mon Oct 19 11:08:31 EST 1998
====================== New DNA Sequences =======================
AB007787 AB007787 908bp mRNA PLN 13-OCT-1998
Arabidopsis thaliana mRNA for DREB1A, complete cds.
DREB1A.
AB007788 AB007788 929bp mRNA PLN 13-OCT-1998
Arabidopsis thaliana mRNA for DREB1B, complete cds.
DREB1B.
AB007789 AB007789 944bp mRNA PLN 13-OCT-1998
Arabidopsis thaliana mRNA for DREB1C, complete cds.
DREB1C.
AB007790 AB007790 1428bp mRNA PLN 13-OCT-1998
Arabidopsis thaliana mRNA for DREB2A, complete cds.
DREB2A.
AB007791 AB007791 1388bp mRNA PLN 13-OCT-1998
Arabidopsis thaliana mRNA for DREB2B, complete cds.
DREB2B.
==================== Updated DNA Sequences =====================
AB018408 AB018408 1100bp mRNA PLN 14-OCT-1998
Arabidopsis thaliana mRNA for 3-phosphoserine phosphatase, complete cds.
PSP; 3-phosphoserine phosphatase.
AB018409 AB018409 1734bp DNA PLN 14-OCT-1998
Arabidopsis thaliana gene for 3-phosphoserin phosphatase, complete cds.
PSP; 3-phosphoserin phosphatase.
ATAC004450 AC004450 90283bp DNA PLN 16-OCT-1998
Arabidopsis thaliana chromosome II BAC F14B2 genomic sequence, complete
sequence.
HTG; F14B2.1; F14B2.2; F14B2.3; putative isopropylmalate dehydratase;
F14B2.4; F14B2.5; F14B2.6; putative pirin protein; F14B2.7; GTP-binding
protein; F14B2.8; F14B2.9; putative extensin; F14B2.10; putative
Af10-protein; F14B2.11; F14B2.12; putative carboxyphosphoenolpyruvate
mutase; F14B2.13; F14B2.14; F14B2.15; F14B2.16; F14B2.17; putative
protein kinase; F14B2.18; F14B2.19; F14B2.20; putative myb-related
transcription factor; F14B2.21; F14B2.22; F14B2.23; putative calcium
binding protein; F14B2.24; tRNA-Thr; F14B2.25; F14B2.26.
AC005398 AC005398 92524bp DNA HTG 16-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6B13'
genomic sequence near marker 'mi398'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005499 AC005499 107541bp DNA HTG 15-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6A23'
genomic sequence near marker 've018'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005662 AC005662 96066bp DNA HTG 16-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13H10'
genomic sequence near marker 'CIC11C08'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005693 AC005693 80891bp DNA HTG 13-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T25N22'
genomic sequence near marker 'mi310'; HTGS phase 2, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC005700 AC005700 104971bp DNA HTG 15-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T32F6'
genomic sequence near marker 'TEn5'; HTGS phase 1, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC005819 AC005819 63217bp DNA HTG 15-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3A4'
genomic sequence near marker 'CIC06C03'; HTGS phase 1, 3 unordered
pieces.
HTG; HTGS_PHASE1.
AC005824 AC005824 129834bp DNA HTG 16-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F15K20'
genomic sequence near marker 'B68'; HTGS phase 1, 9 unordered pieces.
HTG; HTGS_PHASE1.
AC005825 AC005825 103276bp DNA HTG 16-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T24I21'
genomic sequence near marker 'mi398'; HTGS phase 1, 11 unordered pieces.
HTG; HTGS_PHASE1.
AF061638 AF061638 1319bp mRNA PLN 15-OCT-1998
Arabidopsis thaliana branched-chain alpha-keto acid decarboxylase E1 beta
subunit (BCDH beta1) mRNA, complete cds.
BCDH beta1; branched-chain alpha-keto acid decarboxylase E1 beta subunit.
AF082882 AF082882 969bp mRNA PLN 15-OCT-1998
Arabidopsis thaliana adenylate kinase (ADK1) mRNA, complete cds.
ADK1; adenylate kinase.
AF087459 AF087459 6868bp DNA PLN 15-OCT-1998
Arabidopsis thaliana polar-auxin-transport efflux component AGRAVITROPIC
1 (AGR1) gene, complete cds.
AGR1; polar-auxin-transport efflux component AGRAVITROPIC 1.
AF091106 AF091106 1554bp DNA PLN 15-OCT-1998
Arabidopsis thaliana E2 ubiquitin-conjugating-like enzyme (Ahus5) gene,
complete cds.
Ahus5; E2 ubiquitin-conjugating-like enzyme.
AF092168 AF092168 3143bp DNA PLN 15-OCT-1998
Arabidopsis thaliana signal recognition particle 54 kDa subunit precursor
(SRP54) gene, nuclear gene encoding chloroplast protein, complete cds.
SRP54; signal recognition particle 54 kDa subunit precursor.
AF093754 AF093754 1902bp mRNA PLN 15-OCT-1998
Arabidopsis thaliana trans-membrane nitrate transporter protein AtNRT2:1
mRNA, complete cds.
trans-membrane nitrate transporter protein AtNRT2:1.
AF095641 AF095641 1209bp mRNA PLN 15-OCT-1998
Arabidopsis thaliana MTN3 homolog (MTN3) mRNA, complete cds.
MTN3; MTN3 homolog.
ATAC004450 AC004450 90283bp DNA PLN 16-OCT-1998
Arabidopsis thaliana chromosome II BAC F14B2 genomic sequence, complete
sequence.
HTG; F14B2.1; F14B2.2; F14B2.3; putative isopropylmalate dehydratase;
F14B2.4; F14B2.5; F14B2.6; putative pirin protein; F14B2.7; GTP-binding
protein; F14B2.8; F14B2.9; putative extensin; F14B2.10; putative
Af10-protein; F14B2.11; F14B2.12; putative carboxyphosphoenolpyruvate
mutase; F14B2.13; F14B2.14; F14B2.15; F14B2.16; F14B2.17; putative
protein kinase; F14B2.18; F14B2.19; F14B2.20; putative myb-related
transcription factor; F14B2.21; F14B2.22; F14B2.23; putative calcium
binding protein; F14B2.24; tRNA-Thr; F14B2.25; F14B2.26.
ATAC005167 AC005167 93861bp DNA PLN 15-OCT-1998
Arabidopsis thaliana chromosome II BAC F12A24 genomic sequence, complete
sequence.
HTG; F12A24.1; putative plasma membrane intrinsic protein; F12A24.2;
F12A24.3; F12A24.4; F12A24.5; putative TMV resistance protein; F12A24.6;
putative salt-inducible protein; F12A24.7; putative immediate-early
salicylate-induced glucosyltransferase; F12A24.8; F12A24.9; F12A24.10;
F12A24.11; putative ribosomal protein L27; F12A24.12; putative splicing
factor; F12A24.13; putative transportin; F12A24.14; putative importin;
F12A24.15; tetracycline transporter-like protein; F12A24.16; F12A24.17;
tetracycline transporter-like protein, 3' partial.
ATAC005170 AC005170 108056bp DNA PLN 13-OCT-1998
Arabidopsis thaliana chromosome II BAC T29E15 genomic sequence, complete
sequence.
HTG; T29E15.1; T29E15.2; T29E15.3; T29E15.4; T29E15.5; T29E15.6;
T29E15.7; T29E15.8; putative reverse transcriptase; T29E15.9; T29E15.10;
putative polygalacturonase; T29E15.11; putative cinnamoyl CoA reductase;
T29E15.12; T29E15.13; putative small nuclear ribonucleoprotein;
T29E15.14; T29E15.15; putative kinase; T29E15.16; GMP synthase-like
protein; T29E15.17; T29E15.18; putative CaMB-channel protein; T29E15.19;
putative nodulin; T29E15.20; putative serine carboxypeptidase;
T29E15.21; T29E15.22; T29E15.23; T29E15.24; T29E15.25; putative
eukaryotic initiation factor; T29E15.26; T29E15.27; T29E15.28;
T29E15.29.
ATAC005309 AC005309 106355bp DNA PLN 13-OCT-1998
Arabidopsis thaliana chromosome II BAC F17A22 genomic sequence, complete
sequence.
HTG; F17A22.1; similar to SWI/SNF complex subunit BAF170, 5' partial;
F17A22.2; putative lysophospholipase; F17A22.3; putative small nuclear
ribonucleoprotein, Sm D2; F17A22.4; putative dTDP-glucose
4-6-dehydratase; F17A22.5; F17A22.6; putative pectinesterase; F17A22.7;
putative RNA helicase; F17A22.8; F17A22.9; F17A22.10; F17A22.11;
F17A22.12; glutathione s-transferase, GST6; F17A22.13; tRNA-Gly;
F17A22.14; auxin-responsive GH3-like protein; F17A22.15; Not56-like
protein; F17A22.16; F17A22.17; F17A22.18; F17A22.19;
glutathione-conjugate transporter AtMRP4; F17A22.20; putative
CCAAT-binding transcription factor subunit A (CBF-A); F17A22.21;
F17A22.22; F17A22.23; F17A22.24; F17A22.25; F17A22.26; putative
glutaredoxin; F17A22.27; F17A22.28; putative zinc-finger protein;
F17A22.29; tubby-like protein; F17A22.30; F17A22.31; F17A22.32;
F17A22.33; F17A22.34; F17A22.35; F17A22.36; F17A22.37; putative nuclear
protein; F17A22.38.
ATAC005311 AC005311 82594bp DNA PLN 14-OCT-1998
Arabidopsis thaliana chromosome II BAC T16B12 genomic sequence, complete
sequence.
HTG; T16B12.1; myb-related protein; T16B12.2; putative cysteinyl-tRNA
synthetase; T16B12.3; T16B12.4; T16B12.5; T16B12.6; T16B12.7; T16B12.8;
T16B12.9; putative lipase; T16B12.10; T16B12.11; putative reverse
transcriptase; T16B12.12; T16B12.13; putative GTP-binding protein;
T16B12.14; putative blue copper-binding protein; T16B12.15; T16B12.16.
ATAC005617 AC005617 53882bp DNA PLN 10-OCT-1998
Arabidopsis thaliana chromosome II BAC T30L20 genomic sequence, complete
sequence.
HTG; T30L20.1; similar to symbiotic ammonium transporter, SAT1; T30L20.2;
T30L20.3; T30L20.4; similar to glyoxysomal malate dehydrogenase;
T30L20.5; T30L20.6; homeobox protein, HAT9; T30L20.7;
1-aminocyclopropane-1-carboxylate synthase (ACS4); T30L20.8.
ATF28A23 AL021961 94091bp DNA PLN 15-OCT-1998
Arabidopsis thaliana DNA chromosome 4, BAC clone F28A23 (ESSAII project).
F28A23.10; cinnamyl alcohol dehydrogenase - like protein; F28A23.20;
receptor protein kinase - like protein; F28A23.30; kinetochore (SKP1p) -
like protein; F28A23.40; Phosphoglycerate dehydrogenase - like protein;
F28A23.50; putative protein; F28A23.60; F28A23.70; F28A23.80; cyclin
delta-3; F28A23.90; F28A23.100; hypothetical protein; F28A23.110;
glucosyltransferase -like protein; F28A23.120; F28A23.130;
poly(A)-binding protein; F28A23.140; F28A23.150; F28A23.160; F28A23.170;
F28A23.180; F28A23.190; caffeoyl-CoA O-methyltransferase - like protein;
F28A23.200; F28A23.210; F28A23.220; F28A23.230; F28A23.240; bZIP
transcription factor - like protein (fragment).
ATH011845 AJ011845 739bp mRNA PLN 09-OCT-1998
Arabidopsis thaliana mRNA for IB1C3-1 protein, partial.
IB1C3-1 gene; IB1C3-1 protein; IB1C3-1.
ATH7792 AJ007792 8063bp DNA PLN 12-OCT-1998
Arabidopsis thaliana msh6 gene, exon 1 to 17.
DNA mismatch repair protein; msh6 gene; msh6; Msh6 protein.
ATU73786 U73786 1567bp mRNA PLN 15-OCT-1998
Arabidopsis thaliana ACC synthase (AtACS-6) mRNA, partial cds.
AtACS-6; ACC synthase.
=========== Updated Sequence Features/Annotations =============
AB006696 AB006696 78379bp DNA PLN 15-OCT-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MAF19, complete
sequence.
HTG.
AB006697 AB006697 80970bp DNA PLN 15-OCT-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MAH20, complete
sequence.
HTG.
AB006698 AB006698 84510bp DNA PLN 15-OCT-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MCL19, complete
sequence.
HTG.
AB006699 AB006699 77363bp DNA PLN 15-OCT-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MDJ22, complete
sequence.
HTG.
AB006700 AB006700 83865bp DNA PLN 15-OCT-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MHF15, complete
sequence.
HTG.
AB006701 AB006701 84194bp DNA PLN 15-OCT-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MOP9, complete
sequence.
HTG.
AB006702 AB006702 86263bp DNA PLN 15-OCT-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MPO12, complete
sequence.
HTG.
AB006703 AB006703 71522bp DNA PLN 15-OCT-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRH10, complete
sequence.
HTG.
AB006704 AB006704 79259bp DNA PLN 15-OCT-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MSH12, complete
sequence.
HTG.
AB006705 AB006705 74877bp DNA PLN 15-OCT-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MTH12, complete
sequence.
HTG.
AB006706 AB006706 81701bp DNA PLN 15-OCT-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MVA3, complete
sequence.
HTG.
AB006707 AB006707 82315bp DNA PLN 15-OCT-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MYC6, complete
sequence.
HTG.
AB006708 AB006708 78844bp DNA PLN 15-OCT-1998
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MYJ24, complete
sequence.
HTG.
AB007727 AB007727 79590bp DNA HTG 16-OCT-1998
*** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
chromosome 5, P1 clone: MXC9; HTGS phase 2.
HTG; HTGS_PHASE2.
ATAJ3306 AJ223306 707bp mRNA PLN 12-OCT-1998
Arabidopsis thaliana mRNA for PSBY (Ycf32-related chloroplast thylakoid
membrane proteins).
psbY gene; PSBY proteins; Ycf32-related proteins; psbY; PSBY.
ATHARA2 D01024 844bp mRNA PLN 09-OCT-1998
Arabidopsis thaliana mRNA for small GTP-binding protein (ara-2), complete
cds.
small GTP-binding protein; YPT-related; ara-2.
ATHARA3 D01025 954bp mRNA PLN 09-OCT-1998
Arabidopsis thaliana mRNA for small GTP-binding protein (ara-3), complete
cds.
small GTP-binding protein; YPT-related; ara-3.
ATHARA4 D01026 891bp mRNA PLN 09-OCT-1998
Arabidopsis thaliana mRNA for small GTP-binding protein (ara-4), complete
cds.
YPT-related; small GTP-binding protein; ara-4.
ATHARA5 D01027 734bp mRNA PLN 09-OCT-1998
Arabidopsis thaliana mRNA for small GTP-binding protein (ara-5), partial
cds.
YTP-related; small GTP-binding protein; ara-5.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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