New Arabidopsis DNA 18-Oct-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon Oct 19 11:08:31 EST 1998


====================== New DNA Sequences =======================

AB007787    AB007787      908bp    mRNA     PLN      13-OCT-1998
    Arabidopsis thaliana mRNA for DREB1A, complete cds.
    DREB1A.

AB007788    AB007788      929bp    mRNA     PLN      13-OCT-1998
    Arabidopsis thaliana mRNA for DREB1B, complete cds.
    DREB1B.

AB007789    AB007789      944bp    mRNA     PLN      13-OCT-1998
    Arabidopsis thaliana mRNA for DREB1C, complete cds.
    DREB1C.

AB007790    AB007790     1428bp    mRNA     PLN      13-OCT-1998
    Arabidopsis thaliana mRNA for DREB2A, complete cds.
    DREB2A.

AB007791    AB007791     1388bp    mRNA     PLN      13-OCT-1998
    Arabidopsis thaliana mRNA for DREB2B, complete cds.
    DREB2B.

==================== Updated DNA Sequences =====================

AB018408    AB018408     1100bp    mRNA     PLN      14-OCT-1998
    Arabidopsis thaliana mRNA for 3-phosphoserine phosphatase, complete cds.
    PSP; 3-phosphoserine phosphatase.

AB018409    AB018409     1734bp    DNA      PLN      14-OCT-1998
    Arabidopsis thaliana gene for 3-phosphoserin phosphatase, complete cds.
    PSP; 3-phosphoserin phosphatase.

ATAC004450  AC004450    90283bp    DNA      PLN      16-OCT-1998
    Arabidopsis thaliana chromosome II BAC F14B2 genomic sequence, complete
     sequence.
    HTG; F14B2.1; F14B2.2; F14B2.3; putative isopropylmalate dehydratase;
     F14B2.4; F14B2.5; F14B2.6; putative pirin protein; F14B2.7; GTP-binding
     protein; F14B2.8; F14B2.9; putative extensin; F14B2.10; putative
     Af10-protein; F14B2.11; F14B2.12; putative carboxyphosphoenolpyruvate
     mutase; F14B2.13; F14B2.14; F14B2.15; F14B2.16; F14B2.17; putative
     protein kinase; F14B2.18; F14B2.19; F14B2.20; putative myb-related
     transcription factor; F14B2.21; F14B2.22; F14B2.23; putative calcium
     binding protein; F14B2.24; tRNA-Thr; F14B2.25; F14B2.26.

AC005398    AC005398    92524bp    DNA      HTG      16-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6B13'
     genomic sequence near marker 'mi398'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005499    AC005499   107541bp    DNA      HTG      15-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6A23'
     genomic sequence near marker 've018'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005662    AC005662    96066bp    DNA      HTG      16-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13H10'
     genomic sequence near marker 'CIC11C08'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005693    AC005693    80891bp    DNA      HTG      13-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T25N22'
     genomic sequence near marker 'mi310'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005700    AC005700   104971bp    DNA      HTG      15-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T32F6'
     genomic sequence near marker 'TEn5'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC005819    AC005819    63217bp    DNA      HTG      15-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3A4'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005824    AC005824   129834bp    DNA      HTG      16-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F15K20'
     genomic sequence near marker 'B68'; HTGS phase 1, 9 unordered pieces.
    HTG; HTGS_PHASE1.

AC005825    AC005825   103276bp    DNA      HTG      16-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T24I21'
     genomic sequence near marker 'mi398'; HTGS phase 1, 11 unordered pieces.
    HTG; HTGS_PHASE1.

AF061638    AF061638     1319bp    mRNA     PLN      15-OCT-1998
    Arabidopsis thaliana branched-chain alpha-keto acid decarboxylase E1 beta
     subunit (BCDH beta1) mRNA, complete cds.
    BCDH beta1; branched-chain alpha-keto acid decarboxylase E1 beta subunit.

AF082882    AF082882      969bp    mRNA     PLN      15-OCT-1998
    Arabidopsis thaliana adenylate kinase (ADK1) mRNA, complete cds.
    ADK1; adenylate kinase.

AF087459    AF087459     6868bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana polar-auxin-transport efflux component AGRAVITROPIC
     1 (AGR1) gene, complete cds.
    AGR1; polar-auxin-transport efflux component AGRAVITROPIC 1.

AF091106    AF091106     1554bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana E2 ubiquitin-conjugating-like enzyme (Ahus5) gene,
     complete cds.
    Ahus5; E2 ubiquitin-conjugating-like enzyme.

AF092168    AF092168     3143bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana signal recognition particle 54 kDa subunit precursor
     (SRP54) gene, nuclear gene encoding chloroplast protein, complete cds.
    SRP54; signal recognition particle 54 kDa subunit precursor.

AF093754    AF093754     1902bp    mRNA     PLN      15-OCT-1998
    Arabidopsis thaliana trans-membrane nitrate transporter protein AtNRT2:1
     mRNA, complete cds.
    trans-membrane nitrate transporter protein AtNRT2:1.

AF095641    AF095641     1209bp    mRNA     PLN      15-OCT-1998
    Arabidopsis thaliana MTN3 homolog (MTN3) mRNA, complete cds.
    MTN3; MTN3 homolog.

ATAC004450  AC004450    90283bp    DNA      PLN      16-OCT-1998
    Arabidopsis thaliana chromosome II BAC F14B2 genomic sequence, complete
     sequence.
    HTG; F14B2.1; F14B2.2; F14B2.3; putative isopropylmalate dehydratase;
     F14B2.4; F14B2.5; F14B2.6; putative pirin protein; F14B2.7; GTP-binding
     protein; F14B2.8; F14B2.9; putative extensin; F14B2.10; putative
     Af10-protein; F14B2.11; F14B2.12; putative carboxyphosphoenolpyruvate
     mutase; F14B2.13; F14B2.14; F14B2.15; F14B2.16; F14B2.17; putative
     protein kinase; F14B2.18; F14B2.19; F14B2.20; putative myb-related
     transcription factor; F14B2.21; F14B2.22; F14B2.23; putative calcium
     binding protein; F14B2.24; tRNA-Thr; F14B2.25; F14B2.26.

ATAC005167  AC005167    93861bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana chromosome II BAC F12A24 genomic sequence, complete
     sequence.
    HTG; F12A24.1; putative plasma membrane intrinsic protein; F12A24.2;
     F12A24.3; F12A24.4; F12A24.5; putative TMV resistance protein; F12A24.6;
     putative salt-inducible protein; F12A24.7; putative immediate-early
     salicylate-induced glucosyltransferase; F12A24.8; F12A24.9; F12A24.10;
     F12A24.11; putative ribosomal protein L27; F12A24.12; putative splicing
     factor; F12A24.13; putative transportin; F12A24.14; putative importin;
     F12A24.15; tetracycline transporter-like protein; F12A24.16; F12A24.17;
     tetracycline transporter-like protein, 3' partial.

ATAC005170  AC005170   108056bp    DNA      PLN      13-OCT-1998
    Arabidopsis thaliana chromosome II BAC T29E15 genomic sequence, complete
     sequence.
    HTG; T29E15.1; T29E15.2; T29E15.3; T29E15.4; T29E15.5; T29E15.6;
     T29E15.7; T29E15.8; putative reverse transcriptase; T29E15.9; T29E15.10;
     putative polygalacturonase; T29E15.11; putative cinnamoyl CoA reductase;
     T29E15.12; T29E15.13; putative small nuclear ribonucleoprotein;
     T29E15.14; T29E15.15; putative kinase; T29E15.16; GMP synthase-like
     protein; T29E15.17; T29E15.18; putative CaMB-channel protein; T29E15.19;
     putative nodulin; T29E15.20; putative serine carboxypeptidase;
     T29E15.21; T29E15.22; T29E15.23; T29E15.24; T29E15.25; putative
     eukaryotic initiation factor; T29E15.26; T29E15.27; T29E15.28;
     T29E15.29.

ATAC005309  AC005309   106355bp    DNA      PLN      13-OCT-1998
    Arabidopsis thaliana chromosome II BAC F17A22 genomic sequence, complete
     sequence.
    HTG; F17A22.1; similar to SWI/SNF complex subunit BAF170, 5' partial;
     F17A22.2; putative lysophospholipase; F17A22.3; putative small nuclear
     ribonucleoprotein, Sm D2; F17A22.4; putative dTDP-glucose
     4-6-dehydratase; F17A22.5; F17A22.6; putative pectinesterase; F17A22.7;
     putative RNA helicase; F17A22.8; F17A22.9; F17A22.10; F17A22.11;
     F17A22.12; glutathione s-transferase, GST6; F17A22.13; tRNA-Gly;
     F17A22.14; auxin-responsive GH3-like protein; F17A22.15; Not56-like
     protein; F17A22.16; F17A22.17; F17A22.18; F17A22.19;
     glutathione-conjugate transporter AtMRP4; F17A22.20; putative
     CCAAT-binding transcription factor subunit A (CBF-A); F17A22.21;
     F17A22.22; F17A22.23; F17A22.24; F17A22.25; F17A22.26; putative
     glutaredoxin; F17A22.27; F17A22.28; putative zinc-finger protein;
     F17A22.29; tubby-like protein; F17A22.30; F17A22.31; F17A22.32;
     F17A22.33; F17A22.34; F17A22.35; F17A22.36; F17A22.37; putative nuclear
     protein; F17A22.38.

ATAC005311  AC005311    82594bp    DNA      PLN      14-OCT-1998
    Arabidopsis thaliana chromosome II BAC T16B12 genomic sequence, complete
     sequence.
    HTG; T16B12.1; myb-related protein; T16B12.2; putative cysteinyl-tRNA
     synthetase; T16B12.3; T16B12.4; T16B12.5; T16B12.6; T16B12.7; T16B12.8;
     T16B12.9; putative lipase; T16B12.10; T16B12.11; putative reverse
     transcriptase; T16B12.12; T16B12.13; putative GTP-binding protein;
     T16B12.14; putative blue copper-binding protein; T16B12.15; T16B12.16.

ATAC005617  AC005617    53882bp    DNA      PLN      10-OCT-1998
    Arabidopsis thaliana chromosome II BAC T30L20 genomic sequence, complete
     sequence.
    HTG; T30L20.1; similar to symbiotic ammonium transporter, SAT1; T30L20.2;
     T30L20.3; T30L20.4; similar to glyoxysomal malate dehydrogenase;
     T30L20.5; T30L20.6; homeobox protein, HAT9; T30L20.7;
     1-aminocyclopropane-1-carboxylate synthase (ACS4); T30L20.8.

ATF28A23    AL021961    94091bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F28A23 (ESSAII project).
    F28A23.10; cinnamyl alcohol dehydrogenase - like protein; F28A23.20;
     receptor protein kinase - like protein; F28A23.30; kinetochore (SKP1p) -
     like protein; F28A23.40; Phosphoglycerate dehydrogenase - like protein;
     F28A23.50; putative protein; F28A23.60; F28A23.70; F28A23.80; cyclin
     delta-3; F28A23.90; F28A23.100; hypothetical protein; F28A23.110;
     glucosyltransferase -like protein; F28A23.120; F28A23.130;
     poly(A)-binding protein; F28A23.140; F28A23.150; F28A23.160; F28A23.170;
     F28A23.180; F28A23.190; caffeoyl-CoA O-methyltransferase - like protein;
     F28A23.200; F28A23.210; F28A23.220; F28A23.230; F28A23.240; bZIP
     transcription factor - like protein (fragment).

ATH011845   AJ011845      739bp    mRNA     PLN      09-OCT-1998
    Arabidopsis thaliana mRNA for IB1C3-1 protein, partial.
    IB1C3-1 gene; IB1C3-1 protein; IB1C3-1.

ATH7792     AJ007792     8063bp    DNA      PLN      12-OCT-1998
    Arabidopsis thaliana msh6 gene, exon 1 to 17.
    DNA mismatch repair protein; msh6 gene; msh6; Msh6 protein.

ATU73786    U73786     1567bp    mRNA     PLN      15-OCT-1998
    Arabidopsis thaliana ACC synthase (AtACS-6) mRNA, partial cds.
    AtACS-6; ACC synthase.

=========== Updated Sequence Features/Annotations  =============

AB006696    AB006696    78379bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MAF19, complete
     sequence.
    HTG.

AB006697    AB006697    80970bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MAH20, complete
     sequence.
    HTG.

AB006698    AB006698    84510bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MCL19, complete
     sequence.
    HTG.

AB006699    AB006699    77363bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MDJ22, complete
     sequence.
    HTG.

AB006700    AB006700    83865bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MHF15, complete
     sequence.
    HTG.

AB006701    AB006701    84194bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MOP9, complete
     sequence.
    HTG.

AB006702    AB006702    86263bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MPO12, complete
     sequence.
    HTG.

AB006703    AB006703    71522bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MRH10, complete
     sequence.
    HTG.

AB006704    AB006704    79259bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MSH12, complete
     sequence.
    HTG.

AB006705    AB006705    74877bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MTH12, complete
     sequence.
    HTG.

AB006706    AB006706    81701bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MVA3, complete
     sequence.
    HTG.

AB006707    AB006707    82315bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MYC6, complete
     sequence.
    HTG.

AB006708    AB006708    78844bp    DNA      PLN      15-OCT-1998
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: MYJ24, complete
     sequence.
    HTG.

AB007727    AB007727    79590bp    DNA      HTG      16-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana genomic DNA,
     chromosome 5, P1 clone: MXC9; HTGS phase 2.
    HTG; HTGS_PHASE2.

ATAJ3306    AJ223306      707bp    mRNA     PLN      12-OCT-1998
    Arabidopsis thaliana mRNA for PSBY (Ycf32-related chloroplast thylakoid
     membrane proteins).
    psbY gene; PSBY proteins; Ycf32-related proteins; psbY; PSBY.

ATHARA2     D01024      844bp    mRNA     PLN      09-OCT-1998
    Arabidopsis thaliana mRNA for small GTP-binding protein (ara-2), complete
     cds.
    small GTP-binding protein; YPT-related; ara-2.

ATHARA3     D01025      954bp    mRNA     PLN      09-OCT-1998
    Arabidopsis thaliana mRNA for small GTP-binding protein (ara-3), complete
     cds.
    small GTP-binding protein; YPT-related; ara-3.

ATHARA4     D01026      891bp    mRNA     PLN      09-OCT-1998
    Arabidopsis thaliana mRNA for small GTP-binding protein (ara-4), complete
     cds.
    YPT-related; small GTP-binding protein; ara-4.

ATHARA5     D01027      734bp    mRNA     PLN      09-OCT-1998
    Arabidopsis thaliana mRNA for small GTP-binding protein (ara-5), partial
     cds.
    YTP-related; small GTP-binding protein; ara-5.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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