New Arabidopsis DNA 24-Oct-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Oct 24 13:39:30 EST 1998


====================== New DNA Sequences =======================

AB018552    AB018552     1032bp    mRNA     PLN      20-OCT-1998
    Arabidopsis thaliana AtRER1C mRNA, complete cds.
    AtRer1C1; AtRER1C.

AB018695    AB018695     1950bp    mRNA     PLN      22-OCT-1998
    Arabidopsis thaliana mRNA for sulfate transporter, complete cds.
    sulfate transporter.

AC005850    AC005850    78642bp    DNA      HTG      22-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     T25B24 genomic sequence; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC005851    AC005851   100991bp    DNA      HTG      22-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F24D13'
     genomic sequence near marker 'B68'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

ATH010456   AJ010456     1635bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH2.
    DEAD box; Rh2 gene; RNA helicase; RH2.

ATH010457   AJ010457     2749bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase,RH3.
    DEAD box; RH3 gene; RNA helicase; RH3.

ATH010458   AJ010458     1433bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH5.
    DEAD box; RH5 gene; RNA helicase; RH5.

ATH010459   AJ010459      896bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH6.
    DEAD box; RH6 gene; RNA helicase; RH6.

ATH010460   AJ010460     2015bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH8.
    DEAD box; RH8 gene; RNA helicase; RH8.

ATH010461   AJ010461     1324bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH9.
    DEAD box; RH9 gene; RNA helicase; RH9.

ATH010462   AJ010462     1332bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH10.
    DEAD box; RH10 gene; RNA helicase; RH10.

ATH010463   AJ010463     1027bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH11.
    DEAD box; RH11 gene; RNA helicase; RH11.

ATH010464   AJ010464     2221bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH12.
    DEAD box; RH12 gene; RNA helicase; RH12.

ATH010465   AJ010465     1424bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH13.
    DEAD box; RH13 gene; RNA helicase; RH13.

ATH010466   AJ010466     1635bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH15.
    DEAD box; RH15 gene; RNA helicase; RH15.

ATH010467   AJ010467     1083bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH16.
    DEAD box; RH16 gene; RNA helicase; RH16.

ATH010468   AJ010468     1085bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH17.
    DEAD box; RH17 gene; RNA helicase; RH17.

ATH010469   AJ010469     1242bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH18.
    DEAD box; RH18 gene; RNA helicase; RH18.

ATH010470   AJ010470      753bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH20.
    DEAD box; RH20 gene; RNA helicase; RH20.

ATH010471   AJ010471     1665bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH22.
    DEAD box; RH22 gene; RNA helicase; RH22.

ATH010472   AJ010472     1595bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH23.
    DEAD box; RH23 gene; RNA helicase; RH23.

ATH010473   AJ010473     1830bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH25.
    DEAD box; RH25 gene; RNA helicase; RH25.

ATH010474   AJ010474     1787bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH26.
    DEAD box; RH26 gene; RNA helicase; RH26.

ATH010475   AJ010475     2863bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH28.
    DEAD box; RH28 gene; RNA helicase; RH28.

ATH010476   AJ010476      790bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH30.
    DEAD box; RH30 gene; RNA helicase; RH30.

ATH010477   AJ010477      885bp    mRNA     PLN      19-OCT-1998
    Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH31.
    DEAD box; RH31 gene; RNA helicase; RH31.

ATY18227    Y18227      749bp    mRNA     PLN      16-OCT-1998
    Arabidopsis thaliana mRNA for blue copper binding-like protein.
    blue copper-binding protein; AWI 32; blue copper binding-like protein.

==================== Updated DNA Sequences =====================

AC005223    AC005223    87967bp    DNA      HTG      22-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     T5A14 genomic sequence; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005560    AC005560   103125bp    DNA      HTG      20-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F2I9'
     genomic sequence near marker 'rga'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005623    AC005623    99345bp    DNA      HTG      22-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20P8'
     genomic sequence near marker 'B68'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005679    AC005679    90425bp    DNA      PLN      17-OCT-1998
    Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence.
    HTG.

AC005700    AC005700   100424bp    DNA      HTG      17-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T32F6'
     genomic sequence near marker 'TEn5'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005819    AC005819    62921bp    DNA      HTG      17-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3A4'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005824    AC005824   126507bp    DNA      HTG      22-OCT-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F15K20'
     genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC005171  AC005171   138181bp    DNA      PLN      22-OCT-1998
    Arabidopsis thaliana chromosome II BAC T4E14 genomic sequence, complete
     sequence.
    HTG; T4E14.1; T4E14.2; T4E14.3; T4E14.4; T4E14.5; T4E14.6; putative
     reverse transcriptase; T4E14.7; T4E14.8; T4E14.9; probable splicing
     factor; T4E14.10; T4E14.11; T4E14.12; putative retrotransposon;
     T4E14.13; putative receptor kinase; T4E14.14; T4E14.15; T4E14.16;
     cycloartenol synthase; T4E14.17; putative zinc finger protein; T4E14.18;
     putative gag-protease polyprotein.

=========== Updated Sequence Features/Annotations  =============

T22H22      AC005388    87768bp    DNA      PLN      20-OCT-1998
    Sequence of BAC T22H22 from Arabidopsis thaliana chromosome 1, complete
     sequence.
    HTG; T22H22.1; T22H22.2; T22H22.3; T22H22.4; T22H22.5; T22H22.6;
     T22H22.7; T22H22.8; T22H22.9; T22H22.10; tRNA-OTHER; T22H22.11;
     T22H22.12; T22H22.13; T22H22.14; T22H22.15; T22H22.16; T22H22.17;
     T22H22.18; T22H22.19; T22H22.20; T22H22.21; T22H22.22; T22H22.23;
     T22H22.24; T22H22.25.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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