New Arabidopsis DNA 19-Sep-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Sep 19 19:04:44 EST 1998


====================== New DNA Sequences =======================

AB017564    AB017564      983bp    mRNA     PLN      17-SEP-1998
    Arabidopsis thaliana mRNA for dof zinc finger protein (adof1), complete
     cds.
    dof zinc finger protein; adof1.

AB017565    AB017565     1034bp    mRNA     PLN      17-SEP-1998
    Arabidopsis thaliana mRNA for Dof zinc finger protein (adof2), complete
     cds.
    adof2; Dof zinc finger protein.

AC005662    AC005662   104269bp    DNA      HTG      10-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13H10'
     genomic sequence near marker 'CIC11C08'; HTGS phase 1, 5 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005679    AC005679   103716bp    DNA      HTG      15-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC
     F9K20; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005687    AC005687   129271bp    DNA      PLN      17-SEP-1998
    Arabidopsis thaliana BAC F1I21 from chromosome 1, near 59 cM, complete
     sequence.
    HTG; F1I23.RAP2.6; RAP2.6; F1I21.L3; L3 cytoplasmic ribosomal protein.

AF016264    AF016264     2644bp    DNA      PLN      12-SEP-1998
    Arabidopsis thaliana FUSCA3 (FUS3) gene, complete cds.
    FUS3; FUSCA3.

AF016265    AF016265     1257bp    mRNA     PLN      12-SEP-1998
    Arabidopsis thaliana FUSCA3 (FUS3) mRNA, complete cds.
    FUS3; FUSCA3.

AF019748    AF019748     1702bp    mRNA     PLN      17-SEP-1998
    Arabidopsis thaliana high-affinity nitrate transporter ACH1 (ACH1) mRNA,
     complete cds.
    ACH1; high-affinity nitrate transporter ACH1.

AF019749    AF019749     1709bp    mRNA     PLN      17-SEP-1998
    Arabidopsis thaliana high-affinity nitrate transporter ACH2 (ACH2) mRNA,
     complete cds.
    ACH2; high-affinity nitrate transporter ACH2.

AF032123    AF032123     1147bp    mRNA     PLN      15-SEP-1998
    Arabidopsis thaliana clp protease (CLP) mRNA, partial cds.
    CLP; clp protease.

AF074375    AF074375     2179bp    mRNA     PLN      14-SEP-1998
    Arabidopsis thaliana cellulase (DEC) mRNA, complete cds.
    DEC; cellulase.

AF074843    AF074843     2316bp    mRNA     PLN      16-SEP-1998
    Arabidopsis thaliana peroxisomal targeting signal type 1 receptor (PEX5)
     mRNA, complete cds.
    PEX5; peroxisomal targeting signal type 1 receptor.

AF076484    AF076484     1490bp    mRNA     PLN      14-SEP-1998
    Arabidopsis thaliana GDP-mannose pyrophosphorylase (GMP1) mRNA, complete
     cds.
    GMP1; GDP-mannose pyrophosphorylase.

AF085480    AF085480     1447bp    DNA      PLN      16-SEP-1998
    Arabidopsis thaliana rac-like GTP binding protein Arac11 (Arac11) gene,
     complete cds.
    Arac11; rac-like GTP binding protein Arac11.

AF089738    AF089738     1612bp    mRNA     PLN      17-SEP-1998
    Arabidopsis thaliana plastid division protein FtsZ mRNA, complete cds.
    plastid division protein FtsZ.

ATAJ10735   AJ010735     8030bp    DNA      PLN      07-SEP-1998
    Arabidopsis thaliana gr1 gene.
    gr1 gene; gr1; gr1-protein.

ATAJ5194    AJ005194     2031bp    mRNA     PLN      04-SEP-1998
    Arabidopsis thaliana mRNA for receiver-like protein 3.
    ARP3 gene; receiver-like protein 3; response regulator; ARP3.

ATAJ5195    AJ005195     1882bp    mRNA     PLN      04-SEP-1998
    Arabidopsis thaliana mRNA for receiver-like protein 4.
    ARP4 gene; receiver-like protein 4; response regulator; ARP4.

ATAJ5196    AJ005196     2007bp    mRNA     PLN      04-SEP-1998
    Arabidopsis thaliana mRNA for receiver-like protein 5.
    ARP5 gene; receiver-like protein 5; response regulator; ARP5.

ATH010713   AJ010713     2782bp    DNA      PLN      07-SEP-1998
    Arabidopsis thaliana fdh gene.
    fdh gene; fiddlehead protein; fdh.

ATH224982   AJ224982    10054bp    DNA      PLN      04-SEP-1998
    Arabidopsis thaliana MAP3K epsilon gene.
    MAP3K epsilon gene; MAP3K epsilon protein kinase; MAP3K epsilon.

ATH6787     AJ006787     1329bp    mRNA     PLN      07-SEP-1998
    Arabidopsis thaliana mRNA for putative phytochelatin synthetase.
    phytochelatin synthetase, putative; putative phytochelatin synthetase.

ATH9696     AJ009696     3900bp    DNA      PLN      04-SEP-1998
    Arabidopsis thaliana wak1 gene.
    wak1 gene; wall-associated kinase; wall-associated protein; wak1;
     wall-associated kinase 1.

ATHCF136    Y15628     1404bp    mRNA     PLN      07-SEP-1998
    Arabidopsis thaliana mRNA for nuclear protein HCF136.
    HCF136; high chlorophyll fluorescence; nuclear encoded protein; HCF136
     protein.

ATT16L1     AL031394    98125bp    DNA      PLN      04-SEP-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone T16L1 (ESSAII project).
    T16L1.10; metal-transporting P-type ATPase (fragment); T16L1.20; putative
     potassium transporter AtKT5p (AtKT5); T16L1.30; putative protein;
     T16L1.40; T16L1.50; T16L1.60; T16L1.70; carbonate dehydratase - like
     protein; T16L1.80; hypothetical protein; T16L1.90; T16L1.100; T16L1.110;
     T16L1.120; T16L1.130; T16L1.140; Arabidopsis dynamin-like protein ADL2;
     T16L1.150; T16L1.160; T16L1.170; T16L1.180; T16L1.190; T16L1.200;
     pathogenesis-related protein 1 precursor, 18.9K; T16L1.210;
     pathogenesis-related protein 1 precursor, 19.3K; T16L1.220;
     pathogenesis-related protein - like; T16L1.230; T16L1.240; T16L1.250;
     putative aspartate--tRNA ligase; T16L1.260; T16L1.270; T16L1.280; male
     sterility 2-like protein; T16L1.290; T16L1.300; beta-xylan endohydrolase
     -like protein.

ATTRRS      Y14329     2354bp    mRNA     PLN      17-SEP-1998
    Arabidopsis thaliana mRNA for threonyl-tRNA synthetase.
    threonyl-tRNA synthetase; ThrRS gene; ThrRS.

F2P3        AF080120    74406bp    DNA      PLN      15-SEP-1998
    Arabidopsis thaliana BAC F2P3.
    F2P3.6; tRNA-OTHER; F2P3.7; F2P3.8; F2P3.9; F2P3.10; F2P3.5; F2P3.11;
     F2P3.12; F2P3.13; F2P3.14; F2P3.15; F2P3.4; F2P3.3; F2P3.16; F2P3.2;
     F2P3.1.

T12H20      AF080119    69658bp    DNA      PLN      15-SEP-1998
    Arabidopsis thaliana BAC T12H20.
    T12H20.9; T12H20.8; T12H20.7; T12H20.6; T12H20.10; T12H20.5; T12H20.4;
     T12H20.11; T12H20.3; T12H20.2; T12H20.12; T12H20.13; T12H20.14;
     T12H20.15; T12H20.1.

T25C13      AF080121   120067bp    DNA      PLN      15-SEP-1998
    Arabidopsis thaliana BAC T25C13.

==================== Updated DNA Sequences =====================

AC004450    AC004450    93132bp    DNA      HTG      17-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14B2'
     genomic sequence near marker 'CIC10F02'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004667    AC004667    98866bp    DNA      HTG      17-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4C15'
     genomic sequence near marker 've016'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC005167    AC005167    93861bp    DNA      HTG      16-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12A24'
     genomic sequence near marker 'mi398'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005170    AC005170   108056bp    DNA      HTG      16-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T29E15'
     genomic sequence near marker 'CIC06C07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005292    AC005292    86781bp    DNA      HTG      12-SEP-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F26F24; HTGS phase 1, 11 unordered pieces.
    HTG; HTGS_PHASE1.

AC005311    AC005311    87272bp    DNA      HTG      17-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T16B12'
     genomic sequence near marker 'm283'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC005314  AC005314    79881bp    DNA      PLN      16-SEP-1998
    Arabidopsis thaliana chromosome II BAC T32F12 genomic sequence, complete
     sequence.
    HTG; T32F12.1; T32F12.2; T32F12.3; putative serpin; T32F12.4; T32F12.5;
     T32F12.6; T32F12.7; T32F12.8; dnaJ-like protein; T32F12.9; putative DNA
     binding factor; T32F12.10; defender against cell death; T32F12.11;
     T32F12.12; T32F12.13; putative fibrillin; T32F12.14; T32F12.15;
     T32F12.16; putative hin1; T32F12.17; T32F12.18; T32F12.19; T32F12.20;
     T32F12.21; putative chloroplast 31 kDa ribonucleoprotein precursor;
     T32F12.22; T32F12.23; phosphoribosyl diphosphate synthetase; T32F12.24;
     putative peroxidase; T32F12.25; glycine decarboxylase complex H-protein;
     T32F12.26; T32F12.27; T32F12.28; putative RNA helicase; T32F12.29.

AC005396    AC005396    85214bp    DNA      HTG      15-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T26I20'
     genomic sequence near marker 'mi398'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005397    AC005397   110149bp    DNA      HTG      15-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3F17'
     genomic sequence near marker 'CIC02E07'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC005398    AC005398    98571bp    DNA      HTG      16-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6B13'
     genomic sequence near marker 'mi398'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC005499    AC005499   144422bp    DNA      HTG      17-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6A23'
     genomic sequence near marker 've018'; HTGS phase 1, 13 unordered pieces.
    HTG; HTGS_PHASE1.

AC005617    AC005617    61543bp    DNA      HTG      15-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T30L20'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005623    AC005623   106386bp    DNA      HTG      11-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20P8'
     genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AF055635    AF055635     1255bp    mRNA     PLN      12-SEP-1998
    Arabidopsis thaliana protein tyrosine phosphatase 1 (PTP1) mRNA, complete
     cds.
    PTP1; protein tyrosine phosphatase 1.

ATAC005314  AC005314    79881bp    DNA      PLN      16-SEP-1998
    Arabidopsis thaliana chromosome II BAC T32F12 genomic sequence, complete
     sequence.
    HTG; T32F12.1; T32F12.2; T32F12.3; putative serpin; T32F12.4; T32F12.5;
     T32F12.6; T32F12.7; T32F12.8; dnaJ-like protein; T32F12.9; putative DNA
     binding factor; T32F12.10; defender against cell death; T32F12.11;
     T32F12.12; T32F12.13; putative fibrillin; T32F12.14; T32F12.15;
     T32F12.16; putative hin1; T32F12.17; T32F12.18; T32F12.19; T32F12.20;
     T32F12.21; putative chloroplast 31 kDa ribonucleoprotein precursor;
     T32F12.22; T32F12.23; phosphoribosyl diphosphate synthetase; T32F12.24;
     putative peroxidase; T32F12.25; glycine decarboxylase complex H-protein;
     T32F12.26; T32F12.27; T32F12.28; putative RNA helicase; T32F12.29.

ATAC005496  AC005496    90665bp    DNA      PLN      11-SEP-1998
    Arabidopsis thaliana chromosome II BAC T27A16 genomic sequence, complete
     sequence.
    HTG; T27A16.1; putative villin protein, 3' partial; T27A16.2; DNAJ-like
     protein; T27A16.3; nodulin-like protein; T27A16.4; T27A16.5; putative
     membrane glycoprotein; T27A16.6; T27A16.7; T27A16.8; T27A16.9;
     T27A16.10; T27A16.11; T27A16.12; T27A16.13; T27A16.14; T27A16.15;
     T27A16.16; putative flavonol 3-o-glucosyltransferase; T27A16.17;
     T27A16.18; T27A16.19; T27A16.20; T27A16.21; anthranilate synthase;
     T27A16.22; putative cell division protein; T27A16.23; T27A16.24;
     T27A16.25; T27A16.26; T27A16.27; T27A16.28; T27A16.29; T27A16.30.

ATU75601    U75601      933bp    mRNA     PLN      09-SEP-1998
    Arabidopsis thaliana unknown mRNA.

=========== Updated Sequence Features/Annotations  =============

ATAJ2892    AJ002892      675bp    mRNA     PLN      07-SEP-1998
    Arabidopsis thaliana mRNA for glycine-rich RNA-binding protein (AtGRP2).
    glycine-rich protein; GRP2 gene; RNA-binding protein; AtGRP2.

ATEST124N   Y10083      415bp    DNA      PLN      07-SEP-1998
    Arabidopsis thaliana matching EST 124N10.
    hypothetical protein.

ATEST44B7   Y10084      841bp    DNA      PLN      07-SEP-1998
    Arabidopsis thaliana matching EST 44B7.
    hypothetical protein.

ATESTPAP5   Y10085      595bp    DNA      PLN      07-SEP-1998
    Arabidopsis thaliana gene encoding putative desication related protein
     LEA1.
    desication related protein LEA14; hypothetical protein; putative
     desication related protein LEA14.

ATESTYAY1   Y10086     2131bp    DNA      PLN      07-SEP-1998
    Arabidopsis thaliana gene encoding putative dehydrogenase.
    dehydrogenase; hypothetical protein; putative dehydrogenase.

ATF7H19     AL031018   139316bp    DNA      PLN      17-SEP-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSAII project).
    F7H19.10; putative protein; F7H19.20; F7H19.30; F7H19.40; hypothetical
     protein; F7H19.50; anthocyanidin synthase - like protein; F7H19.60;
     putative leucoanthocyanidin dioxygenase (LDOX); F7H19.70; F7H19.80;
     F7H19.90; putative fizzy-related protein; F7H19.100; F7H19.110;
     dihydroorotase; F7H19.120; putative cdc2 kinase homolog; F7H19.130;
     putative MADS Box / AGL protein; F7H19.140; F7H19.150; F7H19.160;
     F7H19.170; F7H19.180; F7H19.190; F7H19.200; F7H19.210; F7H19.220;
     F7H19.230; F7H19.240; putative serine/threonine kinase; F7H19.250;
     F7H19.260; putative membrane protein; F7H19.270; F7H19.280; F7H19.290;
     gamma-glutamylcysteine synthetase; F7H19.300; F7H19.310; F7H19.320;
     protein kinase - like protein; F7H19.330; serine/threonine kinase - like
     protein.

ATH9695     AJ009695     3344bp    DNA      PLN      04-SEP-1998
    Arabidopsis thaliana wak4 gene.
    wall-associated; receptor; wak4 gene; wall-associated kinase; wak4;
     wall-associated kinase 4.

ATHCK2A     D10246     1402bp    mRNA     PLN      12-SEP-1998
    Arabidopsis thaliana ATPK12D mRNA for casein kinase II catalytic subunit,
     complete cds.
    casein kinase II; catalytic subunit; ATPK12D; casein kinase II catalytic
     subunit.

ATHCK2B     D10247     1293bp    mRNA     PLN      12-SEP-1998
    Arabidopsis thaliana ATPK15D mRNA for casein kinase II catalytic subunit,
     complete cds.
    casein kinase II; catalytic subunit; ATPK15D; casein kinase II catalytic
     subunit.

ATSIG1      Y14252     1903bp    mRNA     PLN      04-SEP-1998
    Arabidopsis thaliana mRNA for plastid RNA polymerase sigma factor.
    plastid RNA polymerase sigma factor; sigA gene; sigA.

ATUNKN833   Y10087      833bp    mRNA     PLN      07-SEP-1998
    Arabidopsis thaliana mRNA for unknown protein.
    hypothetical protein; unknown gene.

ATY12776    Y12776    38483bp    DNA      PLN      07-SEP-1998
    Arabidopsis thaliana DNA, 40 kb surrounding ACS1 locus.
    4,5 PIP kinase; ACC synthase; dehydrogenase; hypothetical protein; Lea
     protein; MADS-box protein; MYB-related protein; putative kinase;
     ACC-synthase; LEA protein.

CHATMTS     Y13943     2110bp    mRNA     PLN      07-SEP-1998
    Arabidopsis thaliana mRNA for chloroplast methionyl-tRNA synthetase.
    methionyl-tRNA synthetase; AtcpMetRS; MEtRS.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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