New Arabidopsis DNA 26-Sep-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon Sep 28 10:16:15 EST 1998


====================== New DNA Sequences =======================

AC005693    AC005693    89405bp    DNA      HTG      23-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T25N22'
     genomic sequence near marker 'mi310'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC005698    AC005698    82188bp    DNA      HTG      24-SEP-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T3P18; HTGS phase 1, 10 unordered pieces.
    HTG; HTGS_PHASE1.

AC005700    AC005700   105263bp    DNA      HTG      24-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T32F6'
     genomic sequence near marker 'TEn5'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AF087412    AF087412     1374bp    mRNA     PLN      21-SEP-1998
    Arabidopsis thaliana AJH2 mRNA, complete cds.
    AJH2.

AF087413    AF087413     1339bp    mRNA     PLN      21-SEP-1998
    Arabidopsis thaliana AJH1 mRNA, complete cds.
    AJH1.

AF087435    AF087435     1248bp    mRNA     PLN      23-SEP-1998
    Arabidopsis thaliana unknown mRNA.

ATAJ3357    AJ223357     4029bp    DNA      PLN      21-SEP-1998
    Arabidopsis thaliana SKOR gene.
    potassium channel; SKOR gene; SKOR.

ATAJ3358    AJ223358     2596bp    mRNA     PLN      21-SEP-1998
    Arabidopsis thaliana mRNA for stelar K+ outward rectifying channel SKOR.
    potassium channel; SKOR gene; SKOR; stelar K+ outward rectifying channel.

ATH7312     AJ007312     1457bp    mRNA     PLN      21-SEP-1998
    Arabidopsis thaliana mRNA for pyruvate dehydrogenase kinase.
    pdhk gene; pyruvate dehydrogenase kinase; pdhk.

==================== Updated DNA Sequences =====================

AC004450    AC004450    94068bp    DNA      HTG      23-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14B2'
     genomic sequence near marker 'CIC10F02'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005309    AC005309   146410bp    DNA      HTG      24-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F17A22'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 11 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC005398    AC005398    99433bp    DNA      HTG      23-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6B13'
     genomic sequence near marker 'mi398'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC005499    AC005499   145619bp    DNA      HTG      23-SEP-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T6A23'
     genomic sequence near marker 've018'; HTGS phase 1, 11 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC005395  AC005395   102004bp    DNA      PLN      23-SEP-1998
    Arabidopsis thaliana chromosome II BAC F17H15 genomic sequence, complete
     sequence.
    HTG; F17H15.1; F17H15.2; F17H15.3; alpha-vacuolar processing enzyme;
     F17H15.4; F17H15.5; F17H15.6; F17H15.7; putative Cys3His zinc finger
     protein; F17H15.8; putative oleosin protein; F17H15.9; putative
     serine/threonine protein kinase; F17H15.10; F17H15.11; F17H15.12;
     putative poly(A) polymerase; F17H15.13; putative trytophanyl-tRNA
     synthetase; F17H15.14; F17H15.15; F17H15.16; putative tonoplast
     intrinsic protein; F17H15.17; F17H15.18; receptor-like protein kinase;
     F17H15.19; F17H15.20; F17H15.21; putative casein kinase; F17H15.22;
     F17H15.23.

ATT4L20     AL023094   125179bp    DNA      PLN      21-SEP-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone T4L20 (ESSAII project).
    T4L20.10; putative protein; T4L20.20; putative serine/threonine protein
     kinase; T4L20.30; Nonclathrin coat protein gamma - like protein;
     T4L20.40; GTP binding protein beta subunit; T4L20.50; Skp1p - like
     protein; T4L20.60; putative protein (fragment); T4L20.70; putative
     cyclase associated protein CAP; T4L20.80; T4L20.90; putative
     ketoacyl-CoA synthase; T4L20.100; fatty acid elongase 1; T4L20.110;
     T4L20.120; isoflavone reductase - like protein; T4L20.130; hypothetical
     protein; T4L20.140; T4L20.150; dihydrofolate reductase-thymidylate
     synthase; T4L20.160; T4L20.170; bZIP transcription factor ATB2;
     T4L20.180; T4L20.190; Homeodomain - like protein; T4L20.200; putative
     ribosomal protein S16; T4L20.210; T4L20.220; farnesyl-diphosphate
     farnesyltransferase; T4L20.230; putative squalene synthase; T4L20.240;
     T4L20.250; Putative S-phase-specific ribosomal protein; T4L20.260; GATA
     transcription factor 3; T4L20.270; T4L20.280; T4L20.290; arginine
     decarboxylase SPE2; T4L20.300; vacuolar H+-transporting ATPase 16K
     chain; T4L20.310; T4L20.320; amidophosphoribosyltransferase 2 precursor;
     T4L20.330; T4L20.340; putative auxin-regulated protein.

=========== Updated Sequence Features/Annotations  =============

AB017564    AB017564      983bp    mRNA     PLN      22-SEP-1998
    Arabidopsis thaliana adof1 mRNA for dof zinc finger protein, complete
     cds.
    dof zinc finger protein; adof1.

AB017565    AB017565     1034bp    mRNA     PLN      22-SEP-1998
    Arabidopsis thaliana adof2 mRNA for Dof zinc finger protein, complete
     cds.
    adof2; Dof zinc finger protein.

AF037229    AF037229     3106bp    mRNA     PLN      25-SEP-1998
    Arabidopsis thaliana transcription factor (MP) mRNA, complete cds.
    MP; transcription factor.

AF067773    AF067773     2321bp    mRNA     PLN      22-SEP-1998
    Arabidopsis thaliana glutamyl-tRNA synthetase mRNA, complete cds.
    glutamyl-tRNA synthetase.

ATCONSTAN   X94937 S77098     1124bp    mRNA     PLN      23-SEP-1998
    A.thaliana mRNA for CONSTANS protein.
    constans gene; CONSTANS protein; constans.

ATHATPASE   J04185     1863bp    mRNA     PLN      22-SEP-1998
    Arabidopsis thaliana nucleotide-binding subunit of vacuolar ATPase mRNA,
     complete cds.

ATSTO       X95572     1033bp    mRNA     PLN      23-SEP-1998
    A.thaliana mRNA for salt-tolerance protein.
    salt-tolerance protein; STO gene; STO.

ATU17589    U17589     1275bp    mRNA     PLN      22-SEP-1998
    Arabidopsis thaliana TH14 protein homolog mRNA, complete cds.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




More information about the Arab-gen mailing list