New Arabidopsis DNA 10-Apr-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Sun Apr 11 16:33:26 EST 1999


====================== New DNA Sequences =======================

AB023423    AB023423     1917bp    mRNA     PLN      20-FEB-1999
    Arabidopsis thaliana AST91 mRNA for sulfate transporter, complete cds.
    sulfate transporter; AST91.

AC007234    AC007234    92250bp    DNA      HTG      07-APR-1999
    Genomic sequence for Arabidopsis thaliana BAC F1E22, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC007235    AC007235    76138bp    DNA      HTG      07-APR-1999
    Arabidopsis thaliana 'IGF' BAC 'F28N16' genomic sequence near marker
     've013', WORKING DRAFT SEQUENCE, 7 unordered pieces.
    HTG; HTGS_PHASE1.

AC007236    AC007236    67890bp    DNA      HTG      07-APR-1999
    Arabidopsis thaliana 'TAMU' BAC 'T3D7' genomic sequence near marker
     'mi79a', WORKING DRAFT SEQUENCE, 11 unordered pieces.
    HTG; HTGS_PHASE1.

==================== Updated DNA Sequences =====================

AC006298    AC006298    95433bp    DNA      HTG      07-APR-1999
    Arabidopsis thaliana 'IGF Arabidopsis Library' BAC 'F15A23' genomic
     sequence near marker 'mi398', WORKING DRAFT SEQUENCE, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC007109    AC007109    68593bp    DNA      HTG      03-APR-1999
    Arabidopsis thaliana 'TAMU' BAC 'T13C7' genomic sequence near marker
     'mi148', WORKING DRAFT SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC007127    AC007127    59050bp    DNA      HTG      06-APR-1999
    Arabidopsis thaliana 'TAMU' BAC 'T23A1' genomic sequence near marker
     'mi398', WORKING DRAFT SEQUENCE, 8 unordered pieces.
    HTG; HTGS_PHASE1.

AC007133    AC007133   121149bp    DNA      HTG      03-APR-1999
    Arabidopsis thaliana 'IGF' BAC 'F13I13' genomic sequence near marker
     'CIC10A06', WORKING DRAFT SEQUENCE, 12 unordered pieces.
    HTG; HTGS_PHASE1.

AC007135    AC007135   118997bp    DNA      HTG      07-APR-1999
    Arabidopsis thaliana 'IGF' BAC 'F9C22' genomic sequence near marker
     'g6825', WORKING DRAFT SEQUENCE, 26 unordered pieces.
    HTG; HTGS_PHASE1.

AC007155    AC007155    85796bp    DNA      HTG      03-APR-1999
    Arabidopsis thaliana 'IGF' BAC 'T18E17' genomic sequence near marker
     'PR1', WORKING DRAFT SEQUENCE, 11 unordered pieces.
    HTG; HTGS_PHASE1.

AC007188    AC007188    89934bp    DNA      HTG      07-APR-1999
    Arabidopsis thaliana 'TAMU' BAC 'T4D8' genomic sequence near marker
     'mi421', WORKING DRAFT SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC007196    AC007196    68321bp    DNA      HTG      06-APR-1999
    Arabidopsis thaliana 'TAMU' BAC 'T18C20' genomic sequence near marker
     'RNS1', WORKING DRAFT SEQUENCE, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC007197    AC007197    86398bp    DNA      HTG      05-APR-1999
    Arabidopsis thaliana 'TAMU' BAC 'T22C12' genomic sequence near marker
     'mi398', WORKING DRAFT SEQUENCE, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC007202    AC007202    84775bp    DNA      HTG      03-APR-1999
    Arabidopsis thaliana chromosome 1 BAC T8K14 sequence, WORKING DRAFT
     SEQUENCE, 2 ordered pieces.
    HTG; HTGS_PHASE2.

AC007203    AC007203    95077bp    DNA      HTG      03-APR-1999
    Arabidopsis thaliana chromosome I BAC T10P12 genomic sequence, WORKING
     DRAFT SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC007209    AC007209    92813bp    DNA      HTG      07-APR-1999
    Arabidopsis thaliana 'IGF' BAC 'F14O4' genomic sequence near marker
     'PR1', WORKING DRAFT SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC007210    AC007210   121918bp    DNA      HTG      07-APR-1999
    Arabidopsis thaliana 'IGF' BAC 'F15N24' genomic sequence near marker
     'PR1', WORKING DRAFT SEQUENCE, 27 unordered pieces.
    HTG; HTGS_PHASE1.

AC007211    AC007211   104000bp    DNA      HTG      07-APR-1999
    Arabidopsis thaliana 'IGF' BAC 'F1O13' genomic sequence near marker
     'RNS1', WORKING DRAFT SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC007212    AC007212   101710bp    DNA      HTG      07-APR-1999
    Arabidopsis thaliana 'IGF' BAC 'F8D23' genomic sequence near marker
     'PhyB', WORKING DRAFT SEQUENCE, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC007213    AC007213    85737bp    DNA      HTG      07-APR-1999
    Arabidopsis thaliana 'TAMU' BAC 'T23O15' genomic sequence near marker
     'RNS1', WORKING DRAFT SEQUENCE, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC007230    AC007230    84654bp    DNA      HTG      06-APR-1999
    Arabidopsis thaliana chromosome 1 BAC T23K8 sequence, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC007231    AC007231    91754bp    DNA      HTG      07-APR-1999
    Arabidopsis thaliana 'IGF' BAC 'F7D11' genomic sequence near marker
     'RNS1', WORKING DRAFT SEQUENCE, 11 unordered pieces.
    HTG; HTGS_PHASE1.

AC007232    AC007232    76489bp    DNA      HTG      07-APR-1999
    Arabidopsis thaliana 'TAMU' BAC 'T16B14' genomic sequence near marker
     'mi238', WORKING DRAFT SEQUENCE, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC007233    AC007233    80716bp    DNA      HTG      07-APR-1999
    Arabidopsis thaliana 'TAMU' BAC 'T25M19' genomic sequence near marker
     've013', WORKING DRAFT SEQUENCE, 10 unordered pieces.
    HTG; HTGS_PHASE1.

AF129516    AF129516     1563bp    mRNA     PLN      06-APR-1999
    Arabidopsis thaliana fertilization-independent endosperm protein (FIE)
     mRNA, complete cds.
    FIE; fertilization-independent endosperm protein.

ATAC005956  AC005956    85835bp    DNA      PLN      06-APR-1999
    Arabidopsis thaliana chromosome II P1 MHK10 genomic sequence, complete
     sequence.
    HTG; MHK10.1; putative protein kinase; MHK10.2; MHK10.3; MHK10.4;
     MHK10.5; MHK10.6; MHK10.7; putative zinc finger protein; MHK10.8;
     MHK10.9; MHK10.10; MHK10.11; MHK10.12; MHK10.13; putative SUPERMAN
     transcription factor; MHK10.14; tRNA-Gly; MHK10.15; MHK10.16; MHK10.17;
     MHK10.18; MHK10.19; MHK10.20; MHK10.21; putative copper amine oxidase;
     MHK10.22; serine/threonine protein phosphatase; MHK10.23.

ATAC006526  AC006526    95214bp    DNA      PLN      04-APR-1999
    Arabidopsis thaliana chromosome II BAC F11C10 genomic sequence, complete
     sequence.
    HTG; F11C10.1; putative mitochondrial carrier protein; F11C10.2;
     F11C10.3; putative photomorphogenesis repressor protein COP1; F11C10.4;
     F11C10.5; F11C10.6; putative auxin-responsive GH3 protein; F11C10.7;
     F11C10.8; F11C10.9; putative DNA binding protein; F11C10.10; putative
     DNA binding protein CPC; F11C10.11; F11C10.12; putative cyclic
     nucleotide-regulated ion channel protein; F11C10.13; F11C10.14;
     F11C10.15; putative polygalacturonase; F11C10.16; putative oxa1 protein;
     F11C10.17; F11C10.18; F11C10.19; F11C10.20; F11C10.21; putative cellular
     apoptosis susceptibility protein; F11C10.22; putative auxin response
     factor 1; F11C10.23.

ATAC006585  AC006585   103495bp    DNA      PLN      04-APR-1999
    Arabidopsis thaliana chromosome II BAC F27C12 genomic sequence, complete
     sequence.
    HTG; F27C12.1; protein phosphatase 2C; F27C12.2; early nodulin 16;
     F27C12.3; putative extensin; F27C12.4; F27C12.5; putative ATP-dependent
     Clp proteinase; F27C12.6; F27C12.7; F27C12.8; putative DNA binding
     protein; F27C12.9; putative extragenic suppressor protein; F27C12.10;
     F27C12.11; F27C12.12; F27C12.13; F27C12.14; putative steroid binding
     protein; F27C12.15; F27C12.16; F27C12.17; F27C12.18; F27C12.19;
     F27C12.20; F27C12.21; F27C12.22; F27C12.23; putative tyrosine
     transaminase; F27C12.24; putative MADS-box protein; F27C12.25;
     F27C12.26; putative Rieske iron-sulfur protein; F27C12.27; putative
     thaumatin; F27C12.28; putative peroxidase; F27C12.29; putative CONSTANS
     protein; F27C12.30; F27C12.31; ADP-ribosylation factor 3.

ATAC006841  AC006841   125045bp    DNA      PLN      06-APR-1999
    Arabidopsis thaliana chromosome II BAC F3K23 genomic sequence, complete
     sequence.
    HTG; F3K23.1; putative NADPH dependent mannose 6-phosphate reductase;
     F3K23.2; F3K23.3; putative ubiquitin; F3K23.4; putative cell division
     inhibitor; F3K23.5; F3K23.6; putative kinesin protein; F3K23.7; putative
     pol polyprotein; F3K23.8; putative zinc finger protein; F3K23.9;
     putative fructose biphosphate aldolase; F3K23.10; F3K23.11; F3K23.12;
     tRNA-Pro; F3K23.13; F3K23.14; F3K23.15; putative coatomer alpha subunit;
     F3K23.16; F3K23.17; putative vacuolar proton ATPase subunit; F3K23.18;
     F3K23.19; putative cysteine proteinase precursor; F3K23.20; F3K23.21;
     F3K23.22; putative pol protein with Zn finger CCHC type domain;
     F3K23.23; putative anthracycline associated resistance ARX protein;
     F3K23.24; putative serine/threonine protein kinase; F3K23.25; putative
     dehydrin; F3K23.26; F3K23.27; putative DNAJ protein; F3K23.28; F3K23.29;
     F3K23.30; F3K23.31; putative dihydrofolate reductase, 3' partial.

ATAC006918  AC006918   104292bp    DNA      PLN      06-APR-1999
    Arabidopsis thaliana chromosome II BAC F18P14 genomic sequence, complete
     sequence.
    HTG; F18P14.1; F18P14.2; F18P14.3; F18P14.4; F18P14.5; putative Athila
     retroelement ORF1 protein; F18P14.6; F18P14.7; F18P14.8; F18P14.9;
     F18P14.10; F18P14.11; putative pol polyprotein; F18P14.12; F18P14.13;
     F18P14.14; F18P14.15; F18P14.16; F18P14.17; F18P14.18; putative 5S
     ribosomal RNA; F18P14.19; F18P14.20; putative MuDR MURA transposase;
     F18P14.21.

ATAC006954  AC006954    93701bp    DNA      PLN      07-APR-1999
    Arabidopsis thaliana chromosome II BAC F25P17 genomic sequence, complete
     sequence.
    HTG; F25P17.1; F25P17.2; F25P17.3; F25P17.4; putative retrotransposon
     polyprotein; F25P17.5; F25P17.6; putative ubiquitin carboxyl terminal
     hydrolase; F25P17.7; putative glucosyltransferase; F25P17.8; putative
     glycoprotein; F25P17.9; putative cyclic nucleotide regulated ion
     channel; F25P17.10; F25P17.11; RSZp22 splicing factor; contains RNA
     recognition motif; F25P17.12; putative sarcosine oxidase; F25P17.13;
     F25P17.14; putative APG protein; F25P17.15; F25P17.16; F25P17.17;
     F25P17.18; putative plasma membrane ATPase.

ATAC007070  AC007070    86017bp    DNA      PLN      06-APR-1999
    Arabidopsis thaliana chromosome II BAC T22F11 genomic sequence, complete
     sequence.
    HTG; T22F11.1; T22F11.2; tRNA-Ala; T22F11.3; T22F11.4; T22F11.5;
     T22F11.6; T22F11.7; putative synaptobrevin protein; T22F11.8; T22F11.9;
     T22F11.10; T22F11.11; T22F11.12; T22F11.13; T22F11.14; T22F11.15;
     T22F11.16; T22F11.17; putative serpin protein; T22F11.18; putative myb
     protein; T22F11.19; T22F11.20; putative 60S ribosomal protein L39;
     T22F11.21; T22F11.22.

ATAC007087  AC007087    96685bp    DNA      PLN      04-APR-1999
    Arabidopsis thaliana chromosome II BAC F14N22 genomic sequence, complete
     sequence.
    HTG; F14N22.1; putative 50S ribosomal protein L1; F14N22.2; F14N22.3;
     F14N22.4; putative lipase; F14N22.5; F14N22.6; F14N22.7; F14N22.8;
     F14N22.9; F14N22.10; putative protein kinase MAP3K; F14N22.11;
     F14N22.12; F14N22.13; putative phosphoenolpyruvate carboxylase;
     F14N22.14; DNA regulatory protein GF14 mu; F14N22.15; F14N22.16;
     F14N22.17; putative seed maturation protein; F14N22.18; putative
     serine/threonine protein kinase; F14N22.19; cold-regulated protein
     cor15a precursor; F14N22.20; cold-regulated protein cor15b precursor;
     F14N22.21; putative ATP-dependent RNA helicase; F14N22.22; F14N22.23;
     serine/threonine protein phosphatase PP2A-3 catalytic subunit;
     F14N22.24; putative copper methylamine oxidase.

ATAC007113  AC007113    18372bp    DNA      PLN      06-APR-1999
    Arabidopsis thaliana chromosome II BAC F6K5 genomic sequence, complete
     sequence.
    HTG; F6K5.1; DNA-J protein; F6K5.2; putative actin-binding protein villin
     1; F6K5.3; putative presenilin; F6K5.4; F6K5.5; F6K5.6; F6K5.7; ABC
     transport protein, 3' partial.

ATAC007168  AC007168    81236bp    DNA      PLN      06-APR-1999
    Arabidopsis thaliana chromosome II BAC T26C19 genomic sequence, complete
     sequence.
    HTG; T26C19.1; putative cytochrome p450; T26C19.2; T26C19.3; putative
     ubiquitin-specific protease; T26C19.4; T26C19.5; putative GTP-binding
     protein; T26C19.6; tRNA-Ala; T26C19.7; T26C19.8; T26C19.9; putative
     aspartate aminotransferase; T26C19.10; putative myo-inositol 1-phosphate
     synthase; T26C19.11; putative beta-hydroxyacyl-ACP dehydratase;
     T26C19.12; tRNA-Ile; T26C19.13; T26C19.14; T26C19.15; putative
     trehalose-6-phosphate phosphatase; T26C19.16; T26C19.17; T26C19.18;
     putative thiol-protease; T26C19.19; T26C19.20; T26C19.21.

=========== Updated Sequence Features/Annotations  =============

AF085230    AF085230     1743bp    mRNA     PLN      07-APR-1999
    Arabidopsis thaliana cadmium resistance factor 1 (CRF1) mRNA, complete
     cds.
    CRF1; cadmium resistance factor 1.

ATAC007119  AC007119    54433bp    DNA      PLN      06-APR-1999
    Arabidopsis thaliana chromosome II BAC F2G1 genomic sequence, complete
     sequence.
    HTG; F2G1.1; F2G1.2; F2G1.3; tRNA-Gly; F2G1.4; putative glycine-rich RNA
     binding protein; F2G1.5; F2G1.6; tRNA-Leu; F2G1.7; glycine-rich RNA
     binding protein 7; glycine-rich RNA binding protein Ccr2; F2G1.8;
     F2G1.9; F2G1.10; putative transport protein; F2G1.11; F2G1.12; putative
     pectin methylesterase; F2G1.13; putative AtRer1B; F2G1.14; putative
     glucose-1-phosphate adenylyltransferase; F2G1.15; putative 40S ribosomal
     protein S25; F2G1.16; tRNA-Thr; F2G1.17; F2G1.18; putative dihydrofolate
     reductase 1/thymidylate synthase 1; F2G1.19; putative
     phosphatidylinositol/phophatidylcholine transfer protein.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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