New Arabidopsis DNA 31-Jul-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon Aug 2 10:44:54 EST 1999


====================== New DNA Sequences =======================

AC008113    AC008113   114691bp    DNA      HTG      28-JUL-1999
    Arabidopsis thaliana chromosome 1 clone F12A21, WORKING DRAFT SEQUENCE, 2
     ordered pieces.
    HTG; HTGS_PHASE2.

AC008148    AC008148   110312bp    DNA      HTG      27-JUL-1999
    Arabidopsis thaliana chromosome I clone F15H11, WORKING DRAFT SEQUENCE, 2
     unordered pieces.
    HTG; HTGS_PHASE1.

AC008153    AC008153   123618bp    DNA      HTG      28-JUL-1999
    Arabidopsis thaliana chromosome III clone IGF-F24K9, WORKING DRAFT
     SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC008238    AC008238    86538bp    DNA      HTG      29-JUL-1999
    Arabidopsis thaliana chromosome 1 clone F14O22, WORKING DRAFT SEQUENCE, 2
     unordered pieces.
    HTG; HTGS_PHASE1.

AC008261    AC008261   101218bp    DNA      HTG      30-JUL-1999
    Arabidopsis thaliana chromosome III clone TAMU-T4P13, WORKING DRAFT
     SEQUENCE, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AF079308    AF079308     2628bp    DNA      PLN      31-JUL-1999
    Arabidopsis thaliana myrosinase (TGG1) gene, promoter sequence and
     partial cds.
    TGG1; myrosinase.

AF132115    AF132115     1368bp    DNA      PLN      27-JUL-1999
    Arabidopsis thaliana cytochrome b-561 (CYTB561) gene, partial cds.
    CYTB561; cytochrome b-561.

AF160729    AF160729     1547bp    mRNA     PLN      27-JUL-1999
    Arabidopsis thaliana isovaleryl-CoA-dehydrogenase precursor (IVD) mRNA,
     complete cds; nuclear gene for mitochondrial product.
    IVD; isovaleryl-CoA-dehydrogenase precursor;
     isovaleryl-CoA-dehydrogenase.

AF165912    AF165912     5485bp    DNA      PLN      29-JUL-1999
    Arabidopsis thaliana CTP:phosphocholine cytidylyltransferase (CCT) gene,
     complete cds.
    CCT; CTP:phosphocholine cytidylyltransferase.

ATF8L21     AL096882    98949bp    DNA      PLN      23-JUL-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone F8L21 (ESSA project).
    F8L21.10; putative protein; F8L21.20; respiratory burst oxidase homolog
     F-like protein; F8L21.30; protein phosphatase type 1 PP1BG; F8L21.40;
     F8L21.50; F8L21.60; F8L21.70; ACC synthase (AtACS-6); F8L21.80;
     peroxidase ATP19a; F8L21.90; F8L21.100; drought-inducible cysteine
     proteinase RD21A precursor-like protein; F8L21.110; F8L21.120; MAP
     kinase; F8L21.130; F8L21.140; F8L21.150; RING-H2 finger protein RHA1b;
     F8L21.160; RING-H2 finger protein RHA1a-like protein; F8L21.170;
     beta-adaptin-like protein.

ATT19F6     AL109619    77567bp    DNA      PLN      29-JUL-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence
     (ESSA project).
    T19F6.10; putative protein; T19F6.20; T19F6.30; trehalase-like protein;
     T19F6.40; T19F6.50; T19F6.60; T19F6.70; T19F6.80; hypothetical protein;
     T19F6.90; T19F6.100; T19F6.110; T19F6.120; T19F6.130; T19F6.140;
     T19F6.150; T19F6.160.

L78444      L78444     2810bp    DNA      PLN      27-JUL-1999
    Arabidopsis thaliana serine acetyltranferase 2 (SAT2) gene, complete cds.
    serine acetyltransferase; SAT2; serine acetyltranferase 2.

==================== Updated DNA Sequences =====================

AC007887    AC007887   158994bp    DNA      HTG      30-JUL-1999
    Arabidopsis thaliana chromosome 1 clone F15O4, WORKING DRAFT SEQUENCE, 3
     unordered pieces.
    HTG; HTGS_PHASE1.

AC008007    AC008007   130611bp    DNA      HTG      30-JUL-1999
    Arabidopsis thaliana chromosome 1 clone F12M16, WORKING DRAFT SEQUENCE, 2
     ordered pieces.
    HTG; HTGS_PHASE2.

ATM7J2      AL022197    80386bp    DNA      PLN      23-JUL-1999
    Arabidopsis thaliana DNA chromosome 4, P1 clone M7J2 (ESSA project).
    M7J2.10; putative protein; M7J2.20; hypothetical protein; M7J2.30;
     M7J2.40; actin depolymerizing factor-like protein; M7J2.50; M7J2.60;
     M7J2.70; myb-like protein; M7J2.80; M7J2.90; putative DNA mismatch
     repair protein; M7J2.100; putative homeodomain-protein; M7J2.110;
     M7J2.120; M7J2.130; splicing factor At-SRp40; M7J2.140; transcriptional
     activator CBF1/ CRT/CRE binding factor 1; M7J2.150; transcriptional
     activator CBF1-like protein; M7J2.161; DRE/CRT-binding protein DREB1C;
     M7J2.170; M7J2.180; M7J2.190; M7J2.200; M7J2.210; gibberellin 20-oxidase
     (fragment).

=========== Updated Sequence Features/Annotations  =============

ATAJ2596    AJ002596     1285bp    mRNA     PLN      23-JUL-1999
    Arabidopsis thaliana mRNA for patatin-like protein.
    patatin-like protein.

ATAJ2597    AJ002597     1536bp    mRNA     PLN      23-JUL-1999
    Arabidopsis thaliana mRNA for membrane-associated salt-inducible protein
     like.
    membrane-associated protein; salt-inducible protein; membrane-associated
     salt-inducible protein like.

ATAJ2598    AJ002598      815bp    mRNA     PLN      23-JUL-1999
    Arabidopsis thaliana mRNA for TINY-like protein.
    TINY-like protein.

ATU46924    U46924     1082bp    mRNA     PLN      29-JUL-1999
    Arabidopsis thaliana GTP-binding protein ATGB1 mRNA, complete cds.
    GTP-binding protein ATGB1.

ATU60135    U60135     4276bp    DNA      PLN      26-JUL-1999
    Arabidopsis thaliana serine/threonine protein phosphatase 2A-3 catalytic
     subunit gene, complete cds.
    serine/threonine protein phosphatase 2A-3 catalytic subunit.

T2L5        AF096371    77905bp    DNA      PLN      26-JUL-1999
    Arabidopsis thaliana BAC T2L5.
    T2L5.4; T2L5.5; T2L5.1; T2L5.6; T2L5.7; T2L5.8; T2L5.9.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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