New Arabidopsis DNA 07-Aug-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon Aug 9 10:43:31 EST 1999


====================== New DNA Sequences =======================

AB016622    AB016622     4318bp    mRNA     PLN      03-AUG-1999
    Arabidopsis thaliana mRNA for aldehyde oxidase, complete cds.
    aldehyde oxidase; atAO-3.

AB023448    AB023448     2239bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Aa-0.
    ChiB; basic endochitinase.

AB023449    AB023449     2239bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Bla-10.
    ChiB; basic endochitinase.

AB023450    AB023450     2247bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Bs-1.
    ChiB; basic endochitinase.

AB023451    AB023451     2243bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Hiroshima.
    ChiB; basic endochitinase.

AB023452    AB023452     2239bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Bl-1.
    ChiB; basic endochitinase.

AB023453    AB023453     2243bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Es-0.
    ChiB; basic endochitinase.

AB023454    AB023454     2247bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Gr-1.
    ChiB; basic endochitinase.

AB023455    AB023455     2249bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Shokei.
    ChiB; basic endochitinase.

AB023456    AB023456     2227bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Yo-0.
    ChiB; basic endochitinase.

AB023457    AB023457     2243bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Al-0.
    ChiB; basic endochitinase.

AB023458    AB023458     2237bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Chi-0.
    ChiB; basic endochitinase.

AB023459    AB023459     2225bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Ita-0.
    ChiB; basic endochitinase.

AB023460    AB023460     2252bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Mt-0.
    ChiB; basic endochitinase.

AB023461    AB023461     2258bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Kn-0.
    ChiB; basic endochitinase.

AB023462    AB023462     2210bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Ci-0.
    ChiB; basic endochitinase.

AB023463    AB023463     2210bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana ChiB gene for basic endochitinase, complete cds,
     isolate:Pog-0.
    ChiB; basic endochitinase.

AB030586    AB030586     4557bp    DNA      PLN      04-AUG-1999
    Arabidopsis thaliana AATL1 gene for amino acid transporter-like protein
     1, complete cds.
    amino acid transporter-like protein 1; AATL1.

AC008262    AC008262    99586bp    DNA      HTG      05-AUG-1999
    Arabidopsis thaliana chromosome 1 clone F4N2, WORKING DRAFT SEQUENCE, 2
     ordered pieces.
    HTG; HTGS_PHASE2.

AC008263    AC008263   115200bp    DNA      HTG      31-JUL-1999
    Arabidopsis thaliana chromosome 1 clone F25A4, WORKING DRAFT SEQUENCE, 1
     unordered pieces.
    HTG; HTGS_PHASE1.

AC009176    AC009176    93054bp    DNA      HTG      03-AUG-1999
    Arabidopsis thaliana chromosome III clone MITSUI-MLP3, WORKING DRAFT
     SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC009177    AC009177   143733bp    DNA      HTG      03-AUG-1999
    Arabidopsis thaliana chromosome III clone TAMU-T12H1, WORKING DRAFT
     SEQUENCE, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AF076641    AF076641     2820bp    DNA      PLN      01-AUG-1999
    Arabidopsis thaliana homeodomain leucine-zipper protein ATHB16 gene,
     complete cds.
    homeodomain leucine-zipper protein ATHB16.

AF077335    AF077335     9277bp    DNA      PLN      05-AUG-1999
    Arabidopsis thaliana Anthocyaninless2 (ANL2) gene, complete cds.
    ANL2; Anthocyaninless2.

AF081573    AF081573     1275bp    mRNA     PLN      01-AUG-1999
    Arabidopsis thaliana 19S proteasome regulatory complex subunit S6A mRNA,
     complete cds.
    19S proteasome regulatory complex subunit S6A.

AF106084    AF106084     3495bp    DNA      PLN      05-AUG-1999
    Arabidopsis thaliana 4-coumarate:CoA ligase 1 gene, complete cds.
    4-coumarate:CoA ligase 1.

AF106085    AF106085     7906bp    DNA      PLN      05-AUG-1999
    Arabidopsis thaliana 4-coumarate:CoA ligase 2 gene, complete cds.
    4-coumarate:CoA ligase 2.

AF106086    AF106086     1944bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana 4-coumarate:CoA ligase 2 mRNA, complete cds.
    4-coumarate:CoA ligase 2.

AF106087    AF106087     5666bp    DNA      PLN      05-AUG-1999
    Arabidopsis thaliana 4-coumarate:CoA ligase 3 gene, complete cds.
    4-coumarate:CoA ligase 3.

AF106088    AF106088     1873bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana 4-coumarate:CoA ligase 3 mRNA, complete cds.
    4-coumarate:CoA ligase 3.

AF151646    AF151646     2331bp    mRNA     PLN      03-AUG-1999
    Arabidopsis thaliana PC-MYB1 (PC-MYB1) mRNA, complete cds.
    PC-MYB1.

AF151647    AF151647     1314bp    mRNA     PLN      03-AUG-1999
    Arabidopsis thaliana PC-MYB2 (PC-MYB2) mRNA, complete cds.
    PC-MYB2.

AF167571    AF167571     6001bp    DNA      PLN      02-AUG-1999
    Arabidopsis thaliana chromosome IV clone T15P10 NOR4 locus.

AF167983    AF167983     1511bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana putative pyruvate dehydrogenase beta subunit mRNA,
     complete cds; nuclear gene encoding plastid protein.
    putative pyruvate dehydrogenase beta subunit.

AF170550    AF170550     5437bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana germin-like protein 7 (GLP7) gene, complete cds.
    GLP7; germin-like protein 7.

AF170909    AF170909     1719bp    mRNA     PLN      02-AUG-1999
    Arabidopsis thaliana SYNC1 protein mRNA, complete cds.
    SYNC1 protein.

AF170910    AF170910     1917bp    mRNA     PLN      02-AUG-1999
    Arabidopsis thaliana SYNC2 protein mRNA, complete cds.
    SYNC2 protein.

AP000380    AP000380     7717bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, genomic PCR product
     GA469, complete sequence.
    HTG.

AP000381    AP000381    63604bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K17E12,
     complete sequence.
    HTG.

AP000382    AP000382    80393bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7M2, complete
     sequence.
    HTG.

AP000383    AP000383    83253bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MAL21, complete
     sequence.
    HTG.

AP000384    AP000384    18231bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MCE21, complete
     sequence.
    HTG.

AP000385    AP000385    15401bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MJM20, complete
     sequence.
    HTG.

AP000386    AP000386    82430bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MLD15, complete
     sequence.
    HTG.

AP000387    AP000387    18272bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOI20, complete
     sequence.
    HTG.

AP000388    AP000388    18212bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MRI12, complete
     sequence.
    HTG.

AP000389    AP000389    55739bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MSJ3, complete
     sequence.
    HTG.

ATH238521   AJ238521     1756bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana csd2 gene, exons 1-8, ecotype Ler.
    copper/zinc superoxide dismutase; csd2 gene; csd2; copper/zinc zuperoxide
     dismutase.

ATH238522   AJ238522     1784bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana csd2 gene, exons 1-8, ecotype Cvi.
    copper/zinc superoxide dismutase; csd2 gene; csd2.

ATH243033   AJ243033     1024bp    mRNA     PLN      02-AUG-1999
    Arabidopsis thaliana mRNA for dof zinc finger protein (dof6 gene).
    DNA binding protein; dof zinc finger protein; dof6 gene; dof6.

ATH245407   AJ245407     1315bp    mRNA     PLN      03-AUG-1999
    Arabidopsis thaliana mRNA for syntaxin4 protein (synt4 gene).
    synt4 gene; syntaxin protein; synt4; putative syntaxin protein.

ATH245408   AJ245408     1516bp    mRNA     PLN      03-AUG-1999
    Arabidopsis thaliana mRNA for syntaxin5 protein (synt5 gene).
    synt5 gene; syntaxin protein; synt5; putative syntaxin protein.

M28D5       AL109737    96256bp    DNA      HTG      03-AUG-1999
    Arabidopsis thaliana clone M28D5, WORKING DRAFT SEQUENCE, in unordered
     pieces.
    HTG; HTGS_PHASE1.

==================== Updated DNA Sequences =====================

AC008148    AC008148   110514bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana chromosome I BAC F15H11 genomic sequence, complete
     sequence.
    HTG.

AC008153    AC008153   123882bp    DNA      HTG      05-AUG-1999
    Arabidopsis thaliana chromosome III clone IGF-F24K9, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

ATT4L20     AL023094   125502bp    DNA      PLN      30-JUL-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone T4L20 (ESSA project).
    T4L20.10; putative protein; T4L20.20; putative serine/threonine protein
     kinase; T4L20.30; Nonclathrin coat protein gamma-like protein; T4L20.40;
     GTP binding protein beta subunit; T4L20.50; Skp1p-like protein;
     T4L20.60; putative protein (fragment); T4L20.70; putative cyclase
     associated protein CAP; T4L20.80; T4L20.90; putative ketoacyl-CoA
     synthase; T4L20.100; fatty acid elongase 1; T4L20.110; T4L20.120;
     isoflavone reductase-like protein; T4L20.130; hypothetical protein;
     T4L20.140; T4L20.150; dihydrofolate reductase-thymidylate synthase;
     T4L20.160; T4L20.170; bZIP transcription factor ATB2; T4L20.180;
     T4L20.190; Homeodomain-like protein; T4L20.200; putative ribosomal
     protein S16; T4L20.210; T4L20.220; farnesyl-diphosphate
     farnesyltransferase; T4L20.230; putative squalene synthase; T4L20.240;
     T4L20.250; Putative S-phase-specific ribosomal protein; T4L20.260; GATA
     transcription factor 3; T4L20.270; T4L20.280; T4L20.290; arginine
     decarboxylase SPE2; T4L20.300; vacuolar H+-transporting ATPase 16K
     chain; T4L20.310; T4L20.320; amidophosphoribosyltransferase 2 precursor;
     T4L20.330; T4L20.340; putative auxin-regulated protein.

ATU36447    U36447     1023bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana GF14 Kappa isoform mRNA, complete cds.
    GF14 Kappa isoform.

ATU60444    U60444     1103bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana 14-3-3 protein isoform GF14 mu mRNA, complete cds.
    GF14 mu.

=========== Updated Sequence Features/Annotations  =============

AB022324    AB022324     3090bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana mRNA for AtClpC, complete cds.
    AtClpC; AtclpC.

AB022326    AB022326     1090bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana mRNA for nClpP1 (nuclear encoded ClpP1), complete
     cds.
    nClpP1; nClpP1 (nuclear encoded ClpP1); nclpP1.

AB022327    AB022327      999bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana mRNA for nClpP2 (nuclear encoded ClpP2), complete
     cds.
    nClpP2; nclpP2.

AB022328    AB022328     1124bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana mRNA for nClpP3 (nuclear encoded ClpP3), complete
     cds.
    nClpP3; nclpP3.

AB022329    AB022329     1183bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana mRNA for nClpP4 (nuclear encoded ClpP4), partial
     cds.
    nClpP4; nclpP4.

AB022330    AB022330     1463bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana mRNA for nClpP5 (nuclear encoded ClpP5), complete
     cds.
    nClpP5; nClpP5 (nuclear encoded ClpP5); nclpP5.

AC007887    AC007887   159472bp    DNA      HTG      01-AUG-1999
    Arabidopsis thaliana chromosome 1 clone F15O4, WORKING DRAFT SEQUENCE, 2
     ordered pieces.
    HTG; HTGS_PHASE2.

AC008238    AC008238    86538bp    DNA      HTG      05-AUG-1999
    Arabidopsis thaliana chromosome 4 clone F14O22, WORKING DRAFT SEQUENCE, 2
     unordered pieces.
    HTG; HTGS_PHASE1.

AF053941    AF053941     2890bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana non phototropic hypocotyl 1-like (NPL1) mRNA,
     complete cds.
    NPL1; non phototropic hypocotyl 1-like.

AP000368    AP000368    37511bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: F6B6, complete
     sequence.
    HTG.

AP000369    AP000369    11049bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: F6I13, complete
     sequence.
    HTG.

AP000370    AP000370    79279bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K15N2,
     complete sequence.
    HTG.

AP000372    AP000372    36824bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K23F3,
     complete sequence.
    HTG.

AP000373    AP000373    71521bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDC8, complete
     sequence.
    HTG.

AP000374    AP000374    20724bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEE5, complete
     sequence.
    HTG.

AP000375    AP000375    62948bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJG9, complete
     sequence.
    HTG.

AP000376    AP000376      611bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTE24, complete
     sequence.
    HTG.

AP000377    AP000377    71178bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYM9, complete
     sequence.
    HTG.

AP000378    AP000378    18384bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone: T4M5, complete
     sequence.
    HTG.

ATAP21      Z99707   206420bp    DNA      PLN      30-JUL-1999
    Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1.
    C7A10.10; cytochrome like protein; C7A10.20; cytochrome P450-like
     protein; C7A10.30; C7A10.40; C7A10.50; C7A10.60; putative protein;
     C7A10.70; hypothetical protein; C7A10.80; C7A10.90; Cu2+-transporting
     ATPase-like protein; C7A10.100; myb-related protein; C7A10.110; receptor
     kinase-like protein; C7A10.120; C7A10.130; photosystem II
     oxygen-evolving complex like protein (partial); C7A10.140; cold
     acclimation protein homolog; C7A10.150; C7A10.160; thiol-disulfide
     interchange like protein; C7A10.170; tubulin-like protein; C7A10.180;
     putative cytoskeletal protein; C7A10.190; C7A10.200; pectinesterase like
     protein; C7A10.210; hydroxynitrile lyase like protein; C7A10.220;
     putative protein (partial); C7A10.230; nucleoporin-like protein;
     C7A10.240; C7A10.250; C7A10.260; C7A10.270; C7A10.280; C7A10.290;
     patatin-like protein; C7A10.300; C7A10.310; C7A10.320; methionyl
     aminopeptidase-like protein; C7A10.330; C7A10.340; C7A10.350;
     caltractin-like protein; C7A10.360; C7A10.370; heat shock transcription
     factor HSF4; C7A10.380; C7A10.390; C7A10.400; RNA-binding like protein;
     C7A10.410; MAP3K-like protein kinase; C7A10.420; C7A10.430; C7A10.440;
     APETALA2 protein; C7A10.450; C7A10.460; TINY-like protein; C7A10.470;
     UDP-glucuronyltransferase-like protein; C7A10.480; cysteine proteinase;
     C7A10.490; BEL1-like homeobox 2 protein (BLH2).

ATCAKHD     X71364     4800bp    DNA      PLN      03-AUG-1999
    A.thaliana (Columbia) partial gene for aspartate kinase homoserine
     dehydrogenase.
    aspartate kinase; chloroplast protein; homoserine dehydrogenase;
     aspartate kinase homoserine dehydrogenase; beta-aspartyl phosphate
     homoserine.

ATDRT100    X66482 S43965     1360bp    mRNA     PLN      03-AUG-1999
    Arabidopsis thaliana mRNA for DRT 100 protein.
    recombination protein; DRT 100; putative.

ATF20O9     AL021749    93695bp    DNA      PLN      03-AUG-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone F20O9 (ESSA project).
    F20O9.10; hypothetical protein; F20O9.20; F20O9.40; receptor protein
     kinase like protein; F20O9.30; copper-binding protein-like; F20O9.50;
     F20O9.70; extensin-like protein; F20O9.60; ADP, ATP carrier-like
     protein; F20O9.80; protein phosphatase 2C-like protein; F20O9.90;
     F20O9.100; tyrosine transaminase-like protein; F20O9.110; F20O9.120;
     putative protein; F20O9.130; SOF1 protein-like protein; F20O9.140;
     F20O9.150; F20O9.160; heat-shock protein; F20O9.180; receptor-like
     protein kinase 5 precursor (RLK5); F20O9.190; predicted protein;
     F20O9.200; prohibitin-like protein; F20O9.210; 12S cruciferin seed
     storage protein; F20O9.220; NAM / CUC2-like protein; F20O9.240; protein
     kinase ADK1-like protein; F20O9.250.

ATU37701    U37701     1354bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana phosphoglycerate kinase mRNA, partial cds.
    phosphoglycerate kinase.

ATU37702    U37702     2257bp    mRNA     PLN      05-AUG-1999
    Arabidopsis thaliana cellulase (OR16pep) mRNA, complete cds.
    cellulase; prediction according to the van Hejne parameters with an only
     moderate probability.

F16N3       AC007519   171769bp    DNA      PLN      31-JUL-1999
    Sequence of BAC F16N3 from Arabidopsis thaliana chromosome 1, complete
     sequence.
    HTG; F16N3.1; F16N3.2; F16N3.3; F16N3.4; F16N3.5; F16N3.6; F16N3.7;
     F16N3.8; F16N3.9; F16N3.10; F16N3.11; F16N3.12; F16N3.13; F16N3.14;
     F16N3.15; F16N3.16; F16N3.17; F16N3.18; F16N3.19; F16N3.20; F16N3.21;
     F16N3.22; F16N3.23; F16N3.24; F16N3.25; F16N3.26; F16N3.27.

F21H2       AC007894    88512bp    DNA      PLN      31-JUL-1999
    Arabidopsis thaliana chromosome 1 BAC F21H2 sequence, complete sequence.
    HTG; F21H2.1; F21H2.2; F21H2.3; F21H2.4; F21H2.5; F21H2.6; F21H2.7;
     F21H2.8; F21H2.9; F21H2.10; F21H2.11; F21H2.12; F21H2.13.

T17H3       AC005916    65839bp    DNA      PLN      05-AUG-1999
    Arabidopsis thaliana chromosome 1 BAC T17H3 sequence, complete sequence.
    HTG; T17H3.1; T17H3.2; T17H3.3; T17H3.4; T17H3.5; T17H3.6; T17H3.7;
     T17H3.8; T17H3.9; T17H3.10; T17H3.11; T17H3.12; T17H3.13; T17H3.14.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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