New Arabidopsis DNA 28-Aug-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Aug 28 13:17:17 EST 1999


====================== New DNA Sequences =======================

AC009398    AC009398    91509bp    DNA      HTG      21-AUG-1999
    Arabidopsis thaliana chromosome 1 clone F20B24, WORKING DRAFT SEQUENCE, 8
     unordered pieces.
    HTG; HTGS_PHASE1.

AC009400    AC009400    96645bp    DNA      HTG      21-AUG-1999
    Arabidopsis thaliana chromosome III clone IGF-F14P13, WORKING DRAFT
     SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC009465    AC009465   100456bp    DNA      HTG      26-AUG-1999
    Arabidopsis thaliana chromosome III clone TAMU-T9J14, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC009513    AC009513    89950bp    DNA      HTG      25-AUG-1999
    Arabidopsis thaliana chromosome 1 clone F12P19, WORKING DRAFT SEQUENCE, 8
     unordered pieces.
    HTG; HTGS_PHASE1.

AC009519    AC009519   105764bp    DNA      HTG      26-AUG-1999
    Arabidopsis thaliana chromosome 1 clone F1N19, WORKING DRAFT SEQUENCE, 11
     unordered pieces.
    HTG; HTGS_PHASE1.

AC009525    AC009525    99938bp    DNA      HTG      26-AUG-1999
    Arabidopsis thaliana chromosome I clone F22D16, WORKING DRAFT SEQUENCE, 3
     unordered pieces.
    HTG; HTGS_PHASE1.

AC009526    AC009526    66249bp    DNA      HTG      26-AUG-1999
    Arabidopsis thaliana chromosome I clone F2J6, WORKING DRAFT SEQUENCE, 10
     unordered pieces.
    HTG; HTGS_PHASE1.

AC009529    AC009529    91562bp    DNA      HTG      26-AUG-1999
    Arabidopsis thaliana chromosome III clone TAMU-T25F15, WORKING DRAFT
     SEQUENCE, 8 unordered pieces.
    HTG; HTGS_PHASE1.

AC009540    AC009540   110942bp    DNA      HTG      27-AUG-1999
    Arabidopsis thaliana chromosome III clone IGF-F20H23, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AF093753    AF093753     1562bp    mRNA     PLN      23-AUG-1999
    Arabidopsis thaliana phytochelatin synthase (PCS1) mRNA, complete cds.
    PCS1; phytochelatin synthase.

AF159587    AF159587     2715bp    mRNA     PLN      25-AUG-1999
    Arabidopsis thaliana far-red impaired response protein (FAR1) mRNA,
     complete cds.
    FAR1; far-red impaired response protein.

AF169596    AF169596     1478bp    mRNA     PLN      23-AUG-1999
    Arabidopsis thaliana negative regulator of systemic acquired resistance
     SNI1 (SNI1) mRNA, complete cds.
    SNI1; negative regulator of systemic acquired resistance SNI1.

AF170494    AF170494     2853bp    mRNA     PLN      23-AUG-1999
    Arabidopsis thaliana ionotropic glutamate receptor ortholog GLR6 (GLR6)
     mRNA, complete cds.
    GLR6; ionotropic glutamate receptor ortholog GLR6.

AF173816    AF173816     2545bp    mRNA     PLN      25-AUG-1999
    Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
    BLH2; bel1-like homeodomain 2.

ATC18G5     AL110116    30649bp    DNA      PLN      26-AUG-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone C18G5, partial sequence
     (ESSA project).
    C18G5.10; putative protein; C18G5.20; hypothetical protein; C18G5.30.

ATH245967   AJ245967     7080bp    DNA      PLN      23-AUG-1999
    Arabidopsis thaliana msh6-1 gene for mismatch repair protein msh6-1.
    mismatch repair protein; msh6-1 gene; T-cell receptor; msh6-1; mismatch
     repair protein msh6-1.

ATH9782     AJ009782     2563bp    mRNA     PLN      24-AUG-1999
    Arabidopsis thaliana mRNA for phosphatidylinositol-4-phosphate 5-kinase.
    1-phosphatidylinositol-4-phosphate kinase; p5k2 gene; p5k2;
     phosphatidylinositol-4-phosphate 5-kinase.

==================== Updated DNA Sequences =====================

AC006423    AC006423   127934bp    DNA      HTG      26-AUG-1999
    Arabidopsis thaliana chromosome I clone F28H19, WORKING DRAFT SEQUENCE, 6
     unordered pieces.
    HTG; HTGS_PHASE1.

AC007152    AC007152    81761bp    DNA      HTG      26-AUG-1999
    Arabidopsis thaliana chromosome I clone F1O19, WORKING DRAFT SEQUENCE, 7
     unordered pieces.
    HTG; HTGS_PHASE1.

AC007505    AC007505   135572bp    DNA      HTG      26-AUG-1999
    Arabidopsis thaliana chromosome I clone F28L22, WORKING DRAFT SEQUENCE, 3
     unordered pieces.
    HTG; HTGS_PHASE1.

AC007843    AC007843    82489bp    DNA      HTG      26-AUG-1999
    Arabidopsis thaliana chromosome I clone F28G4, WORKING DRAFT SEQUENCE, 4
     unordered pieces.
    HTG; HTGS_PHASE1.

AC008007    AC008007   130260bp    DNA      HTG      21-AUG-1999
    Arabidopsis thaliana chromosome 1 clone F12M16, WORKING DRAFT SEQUENCE, 1
     ordered pieces.
    HTG; HTGS_PHASE2.

AC008262    AC008262    99698bp    DNA      PLN      21-AUG-1999
    Genomic sequence for Arabidopsis thaliana BAC F4N2 from chromosome I,
     complete sequence.
    HTG.

AC009317    AC009317    99975bp    DNA      HTG      27-AUG-1999
    Arabidopsis thaliana chromosome 1 clone T30E16, WORKING DRAFT SEQUENCE, 3
     ordered pieces.
    HTG; HTGS_PHASE2.

AC009323    AC009323   131078bp    DNA      HTG      26-AUG-1999
    Arabidopsis thaliana chromosome I clone F25P12, WORKING DRAFT SEQUENCE, 4
     unordered pieces.
    HTG; HTGS_PHASE1.

AC009324    AC009324    85413bp    DNA      PLN      26-AUG-1999
    Arabidopsis thaliana chromosome I BAC T18A20 genomic sequence, complete
     sequence.
    HTG.

AC009325    AC009325   114549bp    DNA      HTG      27-AUG-1999
    Arabidopsis thaliana chromosome III clone IGF-F4P13, WORKING DRAFT
     SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

=========== Updated Sequence Features/Annotations  =============

AB027151    AB027151     2233bp    DNA      PLN      25-AUG-1999
    Arabidopsis thaliana gene for threonine synthase, complete cds.
    threonine synthase.

AC008030    AC008030    57455bp    DNA      HTG      26-AUG-1999
    Arabidopsis thaliana chromosome I clone F1N18, WORKING DRAFT SEQUENCE, 7
     unordered pieces.
    HTG; HTGS_PHASE1.

AF153677    AF153677     2762bp    DNA      PLN      25-AUG-1999
    Arabidopsis thaliana vacuolar H+-pumping ATPase 16 kDa subunit c isoform
     4 (AVAP4) gene, complete cds.
    AVAP4; vacuolar H+-pumping ATPase 16 kDa subunit c isoform 4.

ATH242588   AJ242588     1242bp    mRNA     PLN      25-AUG-1999
    Arabidopsis thaliana mRNA for partial 1-deoxy-d-xylulose-5-phosphate
     reductoisomerase (dxr gene).
    1-deoxy-d-xylulose-5-phosphate reductoisomerase; dxr gene; dxr.

ATH243198   AJ243198     1820bp    mRNA     PLN      24-AUG-1999
    Arabidopsis thaliana mRNA for N-acetylglucosaminyltransferase I
     (GlcNAcT-I gene).
    GlcNAcT-I gene; glycosyl transferase; N-acetylglucosaminyltransferase I;
     GlcNAcT-I; N-acetylglucosaminyltransferase I.

ATH245502   AJ245502     1083bp    mRNA     PLN      24-AUG-1999
    Arabidopsis thaliana partial mRNA for ATP synthase gamma chain,
     chloroplast precursor (atpC1 gene).
    ATP synthase gamma chain, chloroplast precursor; atpC1 gene; atpC1.

ATH245574   AJ245574      861bp    mRNA     PLN      24-AUG-1999
    Arabidopsis thaliana mRNA for chloroplast ATP synthase beta chain
     precursor (atpG gene).
    ATP synthase beta chain precursor; atpG gene; atpG; ATP synthase beta
     chain precursor (subunit II).

ATH7585     AJ007585      628bp    mRNA     PLN      24-AUG-1999
    Arabidopsis thaliana mRNA for IB1P8-4 protein.
    IB1P8-4 gene; IB1P8-4; IB1P8-4 protein.

ATH7586     AJ007586     1275bp    mRNA     PLN      24-AUG-1999
    Arabidopsis thaliana mRNA for src2-like protein.
    F7G19-6 gene; F7G19-6; src2-like protein.

ATH7587     AJ007587     1414bp    mRNA     PLN      24-AUG-1999
    Arabidopsis thaliana mRNA for monooxygenase 1.
    MO1 gene; monooxygenase; MO1.

ATH7588     AJ007588     1410bp    mRNA     PLN      24-AUG-1999
    Arabidopsis thaliana mRNA for monooxygenase 2.
    MO2 gene; monooxygenase; MO2.

ATH7589     AJ007589      219bp    mRNA     PLN      24-AUG-1999
    Arabidopsis thaliana mRNA for monooxygenase 3, partial.
    MO3 gene; monooxygenase; MO3.

ATT15N24    AL078465    92657bp    DNA      PLN      19-AUG-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone T15N24 (ESSA project).
    T15N24.10; putative calcineurin B-like protein; T15N24.20; calcineurin
     B-like protein 3; T15N24.30; putative protein; T15N24.40; isp4 like
     protein; T15N24.50; T15N24.60; putative protein kinase; T15N24.70;
     sucrase-like protein; T15N24.80; T15N24.90; T15N24.100; hnRNP-like
     protein; T15N24.110.

ATU97200    U97200     2595bp    mRNA     PLN      25-AUG-1999
    Arabidopsis thaliana cobalamin-independent methionine synthase (ATCIMS)
     mRNA, complete cds.
    ATCIMS; cobalamin-independent methionine synthase.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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