New Arabidopsis DNA 30-Jan-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Mon Feb 1 11:55:35 EST 1999


====================== New DNA Sequences =======================

AB008097    AB008097     1934bp    mRNA     PLN      23-JAN-1999
    Arabidopsis thaliana mRNA for cytochrome P450, complete cds.
    ROTUNDIFOLIA3; cytochrome P450.

AC006434    AC006434   122758bp    DNA      HTG      27-JAN-1999
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F10A5; HTGS phase 1, 8 unordered pieces.
    HTG; HTGS_PHASE1.

AC006436    AC006436   111656bp    DNA      HTG      25-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13J11'
     genomic sequence near marker 'mi398'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC006437    AC006437    82648bp    DNA      HTG      25-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T19K21'
     genomic sequence near marker 'mi421'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC006438    AC006438    98078bp    DNA      HTG      27-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19G14'
     genomic sequence near marker 'mi398'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC006439    AC006439   100145bp    DNA      HTG      27-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T30D6'
     genomic sequence near marker 'mi39'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC006446    AC006446   107759bp    DNA      HTG      28-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F15O11'
     genomic sequence near marker 'PRI'; HTGS phase 1, 8 unordered pieces.
    HTG; HTGS_PHASE1.

AF079998    AF079998     2641bp    mRNA     PLN      26-JAN-1999
    Arabidopsis thaliana putative glutamate receptor (GLR1) mRNA, complete
     cds.
    GLR1; putative glutamate receptor.

AF079999    AF079999     3029bp    mRNA     PLN      26-JAN-1999
    Arabidopsis thaliana putative glutamate receptor (GLR2) mRNA, complete
     cds.
    GLR2; putative glutamate receptor.

AF083336    AF083336      474bp    mRNA     PLN      28-JAN-1999
    Arabidopsis thaliana ribosomal protein S27 (ARS27A) mRNA, complete cds.
    ARS27A; ribosomal protein S27.

AF083337    AF083337     5531bp    DNA      PLN      28-JAN-1999
    Arabidopsis thaliana ribosomal protein S27 (ARS27A) gene, complete cds.
    ARS27A; ribosomal protein S27.

AF096094    AF096094     6534bp    DNA      PLN      25-JAN-1999
    Arabidopsis thaliana fertilization-independent seed 1 protein (FIS1)
     gene, complete cds.
    FIS1; fertilization-independent seed 1 protein.

AF096095    AF096095     6081bp    DNA      PLN      25-JAN-1999
    Arabidopsis thaliana fertilization-independent seed 2 protein (FIS2)
     gene, complete cds.
    FIS2; fertilization-independent seed 2 protein.

AF096096    AF096096     2384bp    mRNA     PLN      25-JAN-1999
    Arabidopsis thaliana fertilization-independent seed 2 protein (FIS2)
     mRNA, complete cds.
    FIS2; fertilization-independent seed 2 protein.

AF100163    AF100163     2860bp    mRNA     PLN      25-JAN-1999
    Arabidopsis thaliana EZA1 mRNA, complete cds.
    EZA1.

AF102821    AF102821      760bp    mRNA     PLN      25-JAN-1999
    Arabidopsis thaliana actin depolymerizing factor 3 (ADF3) mRNA, complete
     cds.
    ADF3; actin depolymerizing factor 3.

AF102822    AF102822      705bp    mRNA     PLN      25-JAN-1999
    Arabidopsis thaliana actin depolymerizing factor 4 (ADF4) mRNA, complete
     cds.
    ADF4; actin depolymerizing factor 4.

AF102823    AF102823      813bp    mRNA     PLN      25-JAN-1999
    Arabidopsis thaliana actin depolymerizing factor 5 (ADF5) mRNA, complete
     cds.
    ADF5; actin depolymerizing factor 5.

AF102824    AF102824      964bp    mRNA     PLN      25-JAN-1999
    Arabidopsis thaliana actin depolymerizing factor 6 (ADF6) mRNA, complete
     cds.
    ADF6; actin depolymerizing factor 6.

AF102825    AF102825     3205bp    DNA      PLN      25-JAN-1999
    Arabidopsis thaliana actin depolymerizing factor 5 (ADF5) gene, complete
     cds.
    ADF5; actin depolymerizing factor 5.

ATH132387   AJ132387     3254bp    mRNA     PLN      22-JAN-1999
    Arabidopsis thaliana mRNA for Ca2+-ATPase, ACA5 gene.
    ACA5 gene; Ca2+-ATPase; ECA2 gene; ACA5.

ATH132388   AJ132388     3062bp    mRNA     PLN      22-JAN-1999
    Arabidopsis thaliana mRNA for Ca2+-ATPase, ACA6 gene.
    ACA6 gene; Ca2+-ATPase; ECA3 gene; ACA6.

ATH9555     AJ009555      489bp    mRNA     PLN      28-JAN-1999
    Arabidopsis thaliana mRNA for hypothetical protein, partial.
    ORF1; hypothetical protein.

CHATACA1B   X69941     3262bp    mRNA     PLN      21-JAN-1999
    A.thaliana chloroplast ACA1 mRNA encoding envelope Ca2+-ATPase.
    envelope Ca2+-ATPase; ACA1.

L81172      L81172     1956bp    mRNA     PLN      27-JAN-1999
    Arabidopsis thaliana importin alpha homolog mRNA, complete cds.
    importin alpha homolog.

==================== Updated DNA Sequences =====================

AC000107    AC000107   102397bp    DNA      PLN      27-JAN-1999
    Genomic sequence for Arabidopsis thaliana BAC F17F8, complete sequence.
    HTG.

AC005292    AC005292   106285bp    DNA      HTG      24-JAN-1999
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F26F24; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC005698    AC005698    97054bp    DNA      PLN      28-JAN-1999
    Genomic sequence for Arabidopsis thaliana BAC T3P18, complete sequence.
    HTG.

AC005825    AC005825   119854bp    DNA      HTG      27-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T24I21'
     genomic sequence near marker 'mi398'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006202    AC006202    80286bp    DNA      HTG      24-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3B23'
     genomic sequence near marker 'mi54'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC006216    AC006216   110893bp    DNA      PLN      24-JAN-1999
    Arabidopsis thaliana chromosome 1 BAC F5F19 sequence, complete sequence.
    HTG.

AC006220    AC006220   117530bp    DNA      HTG      28-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T20G20'
     genomic sequence near marker 'm246'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC006223    AC006223   111671bp    DNA      HTG      22-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F22D22'
     genomic sequence near marker 'TEn5'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006233    AC006233    96829bp    DNA      HTG      28-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F12K2'
     genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006234    AC006234   135378bp    DNA      HTG      26-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F5H14'
     genomic sequence near marker 'mi148'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006248    AC006248   124957bp    DNA      HTG      28-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F9O13'
     genomic sequence near marker 'mi398'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006264    AC006264   101398bp    DNA      HTG      28-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F26H11'
     genomic sequence near marker ''; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006282    AC006282   127158bp    DNA      HTG      24-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13K3'
     genomic sequence near marker 'g6825'; HTGS phase 1, 11 unordered pieces.
    HTG; HTGS_PHASE1.

AC006300    AC006300    95185bp    DNA      HTG      22-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13B15'
     genomic sequence near marker 'mi238'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006340    AC006340   104426bp    DNA      HTG      24-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9I22'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 6 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC006403    AC006403    86256bp    DNA      HTG      26-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T28I24'
     genomic sequence near marker 'mi238'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006413    AC006413   114188bp    DNA      HTG      26-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F5K7'
     genomic sequence near marker 've013'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006418    AC006418   150627bp    DNA      HTG      28-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13A10'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 18 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC006419    AC006419   123518bp    DNA      HTG      27-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F3K12'
     genomic sequence near marker 'mi421'; HTGS phase 1, 8 unordered pieces.
    HTG; HTGS_PHASE1.

AC006420    AC006420   105680bp    DNA      HTG      27-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T12H3'
     genomic sequence near marker 've013'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC006429    AC006429   103262bp    DNA      HTG      27-JAN-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F15K19'
     genomic sequence near marker 'mi421'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AF063306    AF063306     1826bp    DNA      PLN      26-JAN-1999
    Arabidopsis thaliana putative G-protein-coupled receptor (GCR1) gene,
     promoter and exon 1 sequence, partial cds.
    GCR1; putative G-protein-coupled receptor.

ATAC005724  AC005724    88413bp    DNA      PLN      24-JAN-1999
    Arabidopsis thaliana chromosome II P1 MSF3 genomic sequence, complete
     sequence.
    HTG; MSF3.1; MSF3.2; putative geranylgeranyl pyrophosphate synthase;
     MSF3.3; putative zinc finger protein; MSF3.4; MSF3.5; MSF3.6; MSF3.7;
     MSF3.8; putative trehalose-6-phosphate synthase; MSF3.9; SecY homolog;
     MSF3.10; putative translation initiation factor eIF-2 gamma subunit;
     MSF3.11; putative diacylglycerol kinase; MSF3.12; putative small nuclear
     ribonucleoprotein E (snRNP-E); MSF3.13; putative calmodulin-binding
     protein; MSF3.14; putative DNA repair and recombination protein of the
     SNF2 family; MSF3.15; putative signal recognition particle receptor beta
     subunit; MSF3.16; MSF3.17; phytochrome B; MSF3.18; putative xyloglucan
     endotransglycosylase; MSF3.19; MSF3.20; putative reverse transcriptase;
     MSF3.21; MSF3.22; MSF3.23; putative methyltransferase; MSF3.24; MSF3.25.

ATAC005917  AC005917    92822bp    DNA      PLN      28-JAN-1999
    Arabidopsis thaliana chromosome II BAC F3P11 genomic sequence, complete
     sequence.
    HTG; F3P11.1; putative receptor protein kinase, 3' partial; F3P11.2;
     F3P11.3; putative WD-40 repeat protein; F3P11.4; putative
     beta-1,3-endoglucanase; F3P11.5; putative acyl-CoA cholesterol
     acyltransferase; F3P11.6; F3P11.7; putative casein kinase I; F3P11.8;
     putative nucleosome assembly protein I; F3P11.9; putative recA protein;
     F3P11.10; putative cytokinin oxidase; F3P11.11; F3P11.12; WD-40 repeat
     protein; F3P11.13; F3P11.14; F3P11.15; putative hydrolase; F3P11.16;
     F3P11.17; putative cytidine deaminase; F3P11.18; putative
     senescence-associated protein 5; F3P11.19; putative
     1-aminocyclopropane-1-carboxylate oxidase; F3P11.20; putative
     transmembrane transport protein; F3P11.21; putative zinc (ring) finger
     protein; F3P11.22; putative sf21 {Helianthus annuus} protein; F3P11.23;
     F3P11.24; putative zinc finger protein; F3P11.25; putative zinc
     finger-like protein; F3P11.26.

=========== Updated Sequence Features/Annotations  =============

AF098945    AF098945     1465bp    mRNA     PLN      27-JAN-1999
    Arabidopsis thaliana CTF2A mRNA, complete cds.
    CTF2A.

AF098947    AF098947     1480bp    mRNA     PLN      27-JAN-1999
    Arabidopsis thaliana CTF2B mRNA, complete cds.
    CTF2B.

ATAJ732     AJ000732     8645bp    DNA      PLN      28-JAN-1999
    Arabidopsis thaliana ASKalpha gene.
    ASKalpha gene; shaggy-like kinase alpha; ASKalpha.

ATASKGAMM   Y12710     5408bp    DNA      PLN      28-JAN-1999
    A.thaliana gene encoding shaggy-like kinase gamma.
    ASK-gamma; shaggy-like kinase gamma.

ATCATAL     X94447     3677bp    DNA      PLN      28-JAN-1999
    A.thaliana cat gene for catalase.
    cat gene; catalase; cat.

ATCER1L19   X95965     1992bp    mRNA     PLN      28-JAN-1999
    A.thaliana CER1-like gene (1992bp).
    CER1-like gene; CER1-like.

ATCER1L     X95964     4200bp    DNA      PLN      28-JAN-1999
    A.thaliana CER1-like gene (4200bp).
    CER1-like gene; CER1-like.

ATCHLGPX1   AJ000469      962bp    mRNA     PLN      22-JAN-1999
    Arabidopsis thaliana chloroplast mRNA for glutathione peroxidase.
    chloroplast; glutathione peroxidase; GPX1 gene; GPX1.

ATCYTGPX2   AJ000470      739bp    mRNA     PLN      22-JAN-1999
    Arabidopsis thaliana mRNA for cytosolic glutathione peroxidase.
    cytosolic; glutathione peroxidase; Gpx2 gene; GPX2.

ATFROHABG   Y09581    15202bp    DNA      PLN      28-JAN-1999
    Arabidopsis thaliana FRO1 and FRO2 genes.
    FRO1 gene; FRO2 gene; FRO2; FRO1.

ATGGS       Y09944     1864bp    mRNA     PLN      28-JAN-1999
    A.thaliana mRNA for putative gamma-glutamylcysteine synthetase.
    gamma-glutamylcysteine synthetase.

ATGLUTPER   X89866      928bp    mRNA     PLN      28-JAN-1999
    A.thaliana mRNA for glutathione peroxidase.
    glutathione peroxidase.

ATGST1      Y11727     2280bp    DNA      PLN      22-JAN-1999
    A.thaliana GST1 gene.
    glutathione s-transferase; GST1 gene; ATGST1; gluthatione S-transferase.

ATHISH4PS   X84378      679bp    DNA      PLN      28-JAN-1999
    A.thaliana histone H4 pseudogene.
    histone 4; H4.

ATMERI5DA   X82683      817bp    DNA      PLN      21-JAN-1999
    A.thaliana meri5da gene.
    meri-5 gene; meri5da; Meri-5.

ATT19K4     AL022373   106007bp    DNA      PLN      22-JAN-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone T19K4 (ESSAII project).
    T19K4.10; putative protein (fragment); T19K4.20; putative protein;
     T19K4.30; putative bZIP transcription factor; T19K4.40; T19K4.50;
     T19K4.60; hypothetical protein; T19K4.70; T19K4.80; ras-related small
     GTP-binding protein; T19K4.90; T19K4.100; putative ascorbate peroxidase;
     T19K4.110; T19K4.120; T19K4.130; thaumatin-like protein; T19K4.140;
     T19K4.150; glycine-rich protein; T19K4.160; T19K4.170; DnaJ-like
     protein; T19K4.180; T19K4.190; putative Myc-type transcription factor;
     T19K4.200; Calcium-dependent serine/threonine protein kinase; T19K4.210;
     ATM-like protein; T19K4.220; T19K4.230; T19K4.240; putative
     auxin-induced protein; T19K4.250; myosin-like protein; T19K4.260;
     ribosomal protein L2; T19K4.270; putative disease resistance protein
     (fragment).

ATU43377    U43377     1158bp    mRNA     PLN      26-JAN-1999
    Arabidopsis thaliana GTP-binding protein (OEP34) mRNA, complete cds.
    OEP34; GTP-binding protein.

ATU43397    U43397     2111bp    mRNA     PLN      27-JAN-1999
    Arabidopsis thaliana cryptochrome 2 apoprotein (CRY2) mRNA, complete cds.
    CRY2; cryptochrome 2 apoprotein.

ATU84973    U84973     1377bp    mRNA     PLN      27-JAN-1999
    Arabidopsis thaliana GUT15 mRNA, complete cds.
    GUT15.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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