New Arabidopsis DNA 13-Feb-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Feb 13 20:14:08 EST 1999


====================== New DNA Sequences =======================

AB007799    AB007799     1079bp    mRNA     PLN      09-FEB-1999
    Arabidopsis thaliana mRNA for NADH-cytochrome b5 reductase, complete cds.
    NADH-cytochrome b5 reductase.

AB007800    AB007800     2186bp    DNA      PLN      09-FEB-1999
    Arabidopsis thaliana gene for NADH-cytochrome b5 reductase, complete cds.
    NADH-cytochrome b5 reductase.

AB007801    AB007801      582bp    mRNA     PLN      09-FEB-1999
    Arabidopsis thaliana mRNA for cytochrome b5, complete cds.
    cytochrome b5.

AB007802    AB007802      631bp    mRNA     PLN      09-FEB-1999
    Arabidopsis thaliana mRNA for cytochrome b5, complete cds.
    cytochrome b5.

AB010875    AB010875     3980bp    DNA      PLN      09-FEB-1999
    Arabidopsis thaliana gene for PHR1, complete cds.
    PHR1.

AC006526    AC006526   119376bp    DNA      HTG      05-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F11C10'
     genomic sequence near marker 'CIC02E07'; HTGS phase 1, 11 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC006527    AC006527    45863bp    DNA      HTG      05-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F27C21'
     genomic sequence near marker 'mi421'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC006528    AC006528   106092bp    DNA      HTG      05-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F9B22'
     genomic sequence near marker 'mi398'; HTGS phase 1, 7 unordered pieces.
    HTG; HTGS_PHASE1.

AC006532    AC006532   106240bp    DNA      HTG      06-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14H20'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 7 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC006533    AC006533   110714bp    DNA      HTG      06-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F20M17'
     genomic sequence near marker 'nga361'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC006535    AC006535    98907bp    DNA      HTG      07-FEB-1999
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC T24P13; HTGS phase 1, 9 unordered pieces.
    HTG; HTGS_PHASE1.

AF069468    AF069468     3004bp    DNA      PLN      07-FEB-1999
    Arabidopsis thaliana sterol-C5-desaturase gene, complete cds.
    sterol-C5-desaturase.

AF089810    AF089810     1682bp    mRNA     PLN      10-FEB-1999
    Arabidopsis thaliana Altered Response to Gravity (ARG1) mRNA, complete
     cds.
    ARG1; Altered Response to Gravity.

ATH132745   AJ132745      720bp    mRNA     PLN      06-FEB-1999
    Arabidopsis thaliana hypothetical protein, clone EMG9a29.
    hypothetical protein; ORF1.

ATH132767   AJ132767      248bp    mRNA     PLN      06-FEB-1999
    Arabidopsis thaliana mRNA for hypothetical protein, partial.
    hypothetical protein; ORF1.

==================== Updated DNA Sequences =====================

AC005825    AC005825   119842bp    DNA      HTG      08-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T24I21'
     genomic sequence near marker 'mi398'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC005850    AC005850    84432bp    DNA      PLN      06-FEB-1999
    Arabidopsis thaliana chromosome I BAC T25B24 genomic sequence, complete
     sequence.
    HTG.

AC006219    AC006219    88573bp    DNA      HTG      09-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T14C8'
     genomic sequence near marker 'g4532'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC006234    AC006234   136422bp    DNA      HTG      05-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F5H14'
     genomic sequence near marker 'mi148'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006248    AC006248   127321bp    DNA      HTG      05-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F9O13'
     genomic sequence near marker 'mi398'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006260    AC006260    87871bp    DNA      HTG      05-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T2N18'
     genomic sequence near marker 've018'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006283    AC006283    98112bp    DNA      HTG      06-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T1B3'
     genomic sequence near marker 'mi54'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC006298    AC006298    95077bp    DNA      HTG      06-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF Arabidopsis
     Library' BAC 'F15A23' genomic sequence near marker ''; HTGS phase 1, 7
     unordered pieces.
    HTG; HTGS_PHASE1.

AC006340    AC006340   104245bp    DNA      HTG      06-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T9I22'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC006418    AC006418   150629bp    DNA      HTG      05-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13A10'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 18 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC006419    AC006419   122247bp    DNA      HTG      05-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F3K12'
     genomic sequence near marker 'mi421'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006420    AC006420   105905bp    DNA      HTG      05-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T12H3'
     genomic sequence near marker 've013'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC006436    AC006436   112252bp    DNA      HTG      05-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F13J11'
     genomic sequence near marker 'mi398'; HTGS phase 1, 4 unordered pieces.
    HTG; HTGS_PHASE1.

AC006438    AC006438    99406bp    DNA      HTG      05-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F19G14'
     genomic sequence near marker 'mi398'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC006439    AC006439   100215bp    DNA      HTG      06-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T30D6'
     genomic sequence near marker 'mi39'; HTGS phase 1, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC006446    AC006446   110422bp    DNA      HTG      06-FEB-1999
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F15O11'
     genomic sequence near marker 'PRI'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC006072  AC006072    81565bp    DNA      PLN      09-FEB-1999
    Arabidopsis thaliana chromosome II BAC T9J23 genomic sequence, complete
     sequence.
    HTG; T9J23.1; putative zinc-finger protein (C-x8-C-x5-C-x3-H type
     domains), 5' partial; T9J23.2; T9J23.3; putative glutaredoxin; T9J23.4;
     T9J23.5; putative zinc-finger protein (B-box zinc finger domain);
     T9J23.6; putative tubby protein; T9J23.7; T9J23.8; T9J23.9; T9J23.10;
     T9J23.11; T9J23.12; putative nuclear protein SA-1; T9J23.13; T9J23.14;
     putative WD-40 repeat protein; T9J23.15; putative CRP1-like protein [Zea
     mays]; T9J23.16; putative serine/threonine protein kinase; T9J23.17;
     putative sugar transporter; T9J23.18; T9J23.19; T9J23.20; T9J23.21;
     T9J23.22; T9J23.23; T9J23.24; T9J23.25; putative exoribonuclease (also
     contains zinc-finger C2H2-type domain); T9J23.26; hypothetical protein,
     3' partial.

=========== Updated Sequence Features/Annotations  =============

AF033586    AF033586      709bp    mRNA     PLN      05-FEB-1999
    Arabidopsis thaliana 9G8-like SR protein (SRZ-11) mRNA, complete cds.
    SRZ-11; 9G8-like SR protein.

AF033587    AF033587      998bp    mRNA     PLN      05-FEB-1999
    Arabidopsis thaliana SRZ-80 mRNA, complete cds.
    SRZ-80.

ATDNACON    Y10556     8736bp    DNA      PLN      04-FEB-1999
    A.thaliana constans gene.
    constans gene; CONSTANS.

ATHRNU1     M93439     1465bp    mRNA     PLN      05-FEB-1999
    Arabidopsis thaliana 70kDa small nuclear ribonucleoprotein U1 (RNU1)
     mRNA, partial cds.
    RNU1; small nuclear ribonucleoprotein.

ATLECRECK   Y08010     4793bp    DNA      PLN      04-FEB-1999
    A.thaliana lectin receptor kinase gene.
    transposable; Art1; copia-like element; lectin receptor kinase.

ATRNACON    Y10555     1336bp    mRNA     PLN      04-FEB-1999
    A.thaliana mRNA for CONSTANS like 1 (COL1) protein.
    constans gene; CONSTANS.

ATU52909    U52909     3314bp    DNA      PLN      05-FEB-1999
    Arabidopsis thaliana U1 snRNP 70K protein gene, complete cds.
    U1 snRNP 70K protein; U1 snRNP 70K truncated protein.

ATU52910    U52910     2425bp    mRNA     PLN      05-FEB-1999
    Arabidopsis thaliana U1 snRNP 70K truncated protein mRNA, long
     alternatively spliced transcript, complete cds.
    U1 snRNP 70K truncated protein.

ATY10291    Y10291      463bp    mRNA     PLN      04-FEB-1999
    A.thaliana GAG1At mRNA.
    gag1 gene; GAG1At.

T2K10       AC005966    88037bp    DNA      PLN      09-FEB-1999
    Arabidopsis thaliana chromosome 1 BAC T2K10 sequence, complete sequence.
    HTG; T2K10.1; T2K10.2; T2K10.3; T2K10.4; T2K10.5; T2K10.6; T2K10.7;
     T2K10.8; T2K10.9; T2K10.10; T2K10.11; T2K10.12; T2K10.13; T2K10.14;
     T2K10.15; T2K10.16.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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