New Arabidopsis DNA 12-Jun-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Jun 12 11:33:32 EST 1999


====================== New DNA Sequences =======================

AB028605    AB028605    38089bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:F10E10, complete
     sequence.
    HTG.

AB028606    AB028606    61510bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:F16F17, complete
     sequence.
    HTG.

AB028607    AB028607    77483bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K13N2, complete
     sequence.
    HTG.

AB028608    AB028608    43500bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K20I9, complete
     sequence.
    HTG.

AB028609    AB028609    78535bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8, complete
     sequence.
    HTG.

AB028610    AB028610    38810bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MCP4, complete
     sequence.
    HTG.

AB028611    AB028611    82646bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MFE16, complete
     sequence.
    HTG.

AB028612    AB028612     2593bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MGC1, complete
     sequence.
    HTG.

AB028613    AB028613    35313bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MGG23, complete
     sequence.
    HTG.

AB028614    AB028614    82347bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MIF6, complete
     sequence.
    HTG.

AB028615    AB028615    84157bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MIL15, complete
     sequence.
    HTG.

AB028616    AB028616    86139bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MMG15, complete
     sequence.
    HTG.

AB028617    AB028617    52232bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MOA2, complete
     sequence.
    HTG.

AB028618    AB028618    85690bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MOD1, complete
     sequence.
    HTG.

AB028619    AB028619    22199bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MQD17, complete
     sequence.
    HTG.

AB028620    AB028620    19801bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MTO12, complete
     sequence.
    HTG.

AB028621    AB028621    78921bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MUJ8, complete
     sequence.
    HTG.

AB028622    AB028622    82348bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MZN24, complete
     sequence.
    HTG.

AC007729    AC007729   114068bp    DNA      PLN      05-JUN-1999
    Arabidopsis thaliana chromosome II BAC T18C6 genomic sequence, complete
     sequence.
    HTG.

AC007730    AC007730    48255bp    DNA      PLN      05-JUN-1999
    Arabidopsis thaliana chromosome II BAC T5M2 genomic sequence, complete
     sequence.
    HTG; T5M2.1; T5M2.2; putative reverse transcriptase; T5M2.3; T5M2.4.

AC007764    AC007764   111206bp    DNA      HTG      09-JUN-1999
    Genomic sequence for Arabidopsis thaliana BAC F22C12 from chromosome I,
     WORKING DRAFT SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC007767    AC007767   115731bp    DNA      HTG      09-JUN-1999
    Arabidopsis thaliana chromosome 1 BAC F5D14 sequence, WORKING DRAFT
     SEQUENCE, 8 unordered pieces.
    HTG; HTGS_PHASE1.

AC007781    AC007781    40349bp    DNA      HTG      11-JUN-1999
    Genomic sequence for Arabidopsis thaliana BAC F12G6 from chromosome I,
     WORKING DRAFT SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AF105034    AF105034     2294bp    DNA      PLN      10-JUN-1999
    Arabidopsis thaliana delta7 sterol C-5 desaturase (STE1) gene, complete
     cds.
    STE1; delta7 sterol C-5 desaturase.

AF129511    AF129511     1829bp    mRNA     PLN      07-JUN-1999
    Arabidopsis thaliana very-long-chain fatty acid condensing enzyme CUT1
     (CUT1) mRNA, complete cds.
    CUT1; very-long-chain fatty acid condensing enzyme CUT1.

AF130873    AF130873     4714bp    DNA      PLN      10-JUN-1999
    Arabidopsis thaliana phosphoribosylanthranilate isomerase (PAI1) gene,
     complete cds; and PAI4 pseudogene, complete sequence.
    PAI1; phosphoribosylanthranilate isomerase; PAI4.

AF130874    AF130874     5749bp    DNA      PLN      10-JUN-1999
    Arabidopsis thaliana phosphoribosylanthranilate isomerase (PAI1) gene,
     complete cds; and PAI4 pseudogene, complete sequence.
    PAI1; phosphoribosylanthranilate isomerase; PAI4.

AF130875    AF130875     5453bp    DNA      PLN      10-JUN-1999
    Arabidopsis thaliana phosphoribosylanthranilate isomerase (PAI1) and
     phosphoribosylanthranilate isomerase (PAI4) genes, complete cds.
    PAI1; phosphoribosylanthranilate isomerase; PAI4.

AF130876    AF130876     5222bp    DNA      PLN      10-JUN-1999
    Arabidopsis thaliana phosphoribosylanthranilate isomerase (PAI1) and
     phosphoribosylanthranilate isomerase (PAI4) genes, complete cds.
    PAI1; phosphoribosylanthranilate isomerase; PAI4.

AF130877    AF130877     3024bp    DNA      PLN      10-JUN-1999
    Arabidopsis thaliana phosphoribosylanthranilate isomerase (PAI4*) gene,
     complete cds.
    PAI4*; phosphoribosylanthranilate isomerase.

AF130878    AF130878     7484bp    DNA      PLN      10-JUN-1999
    Arabidopsis thaliana phosphoribosylanthranilate isomerase (PAI1) gene,
     complete cds.
    PAI1; phosphoribosylanthranilate isomerase.

AF132742    AF132742     2050bp    mRNA     PLN      07-JUN-1999
    Arabidopsis thaliana 3-phosphoinositide-dependent protein kinase-1 (PDK1)
     mRNA, complete cds.
    PDK1; 3-phosphoinositide-dependent protein kinase-1.

AF139098    AF139098      735bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana putative zinc finger protein (PMZ) mRNA, complete
     cds.
    PMZ; putative zinc finger protein.

AF143691    AF143691      942bp    mRNA     PLN      07-JUN-1999
    Arabidopsis thaliana type III chlorophyll a/b binding protein (LHCB3*1)
     mRNA, complete cds.
    LHCB3*1; type III chlorophyll a/b binding protein.

AF144078    AF144078     4288bp    DNA      PLN      07-JUN-1999
    Arabidopsis thaliana alpha-xylosidase precursor (XYL1) gene, complete
     cds.
    XYL1; alpha-xylosidase precursor; alpha-xylosidase.

AF144392    AF144392     1653bp    DNA      PLN      08-JUN-1999
    Arabidopsis thaliana thioredoxin-like 4 gene, complete cds.
    thioredoxin-like 4.

AF144393    AF144393     1021bp    DNA      PLN      08-JUN-1999
    Arabidopsis thaliana thioredoxin-like 5 gene, partial cds.
    thioredoxin-like 5.

AF145234    AF145234      782bp    mRNA     PLN      07-JUN-1999
    Arabidopsis thaliana NADPH:quinone oxidoreductase (NQR) mRNA, complete
     cds.
    NQR; NADPH:quinone oxidoreductase.

AF146794    AF146794     1133bp    DNA      PLN      08-JUN-1999
    Arabidopsis thaliana NOZZLE (NZZ) gene, complete cds.
    NZZ; NOZZLE.

AF147721    AF147721      829bp    mRNA     PLN      07-JUN-1999
    Arabidopsis thaliana E12A11 protein (E12A11) mRNA, complete cds.
    E12A11; E12A11 protein.

AF149053    AF149053     1592bp    mRNA     PLN      09-JUN-1999
    Arabidopsis thaliana phytochrome kinase substrate 1 (PKS1) mRNA, complete
     cds.
    PKS1; phytochrome kinase substrate 1.

AF153351    AF153351     2148bp    mRNA     PLN      09-JUN-1999
    Arabidopsis thaliana CDPK-related kinase 1 (CRK1) mRNA, complete cds.
    CRK1; CDPK-related kinase 1.

AF153352    AF153352     2005bp    mRNA     PLN      09-JUN-1999
    Arabidopsis thaliana CDPK-related kinase 2 (CRK2) mRNA, partial cds.
    CRK2; CDPK-related kinase 2.

AF156565    AF156565      361bp    mRNA     PLN      10-JUN-1999
    Arabidopsis thaliana putative cytoskeletal protein mRNA, partial cds.
    putative cytoskeletal protein.

ATT26M18    AL078606    90824bp    DNA      PLN      03-JUN-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone T26M18 (ESSA project).
    T26M18.10; putative protein; T26M18.20; T26M18.30;
     hydroxymethylglutaryl-CoA synthase; T26M18.40; putative phospholipase
     D-gamma; T26M18.50; T26M18.60; T26M18.70; T26M18.80; hypothetical
     protein; T26M18.90; MADS-box protein AGL14; T26M18.100; protein
     kinase-like protein; T26M18.110; KI domain interacting kinase 1-like
     protein; T26M18.120; T26M18.130; Srw1-like protein; T26M18.140.

==================== Updated DNA Sequences =====================

AC006837    AC006837   108584bp    DNA      HTG      11-JUN-1999
    Arabidopsis thaliana 'IGF' BAC 'F23H14' genomic sequence near marker
     'mi398', WORKING DRAFT SEQUENCE, 7 unordered pieces.
    HTG; HTGS_PHASE1.

AC007190    AC007190    86801bp    DNA      PLN      08-JUN-1999
    Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I,
     complete sequence.
    HTG.

AC007396    AC007396    97208bp    DNA      PLN      08-JUN-1999
    Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I,
     complete sequence.
    HTG.

AC007504    AC007504   125023bp    DNA      PLN      08-JUN-1999
    Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete
     sequence.
    HTG.

AC007576    AC007576   112126bp    DNA      PLN      08-JUN-1999
    Arabidopsis thaliana chromosome I BAC F7A19 genomic sequence, complete
     sequence.
    HTG.

AC007592    AC007592    93724bp    DNA      PLN      11-JUN-1999
    Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I,
     complete sequence.
    HTG.

AF126057    AF126057     2260bp    mRNA     PLN      10-JUN-1999
    Arabidopsis thaliana microtubule-associated protein mRNA, complete cds.
    microtubule-associated protein.

ATAC007143  AC007143    75812bp    DNA      PLN      05-JUN-1999
    Arabidopsis thaliana chromosome II BAC T17H1 genomic sequence, complete
     sequence.
    HTG.

ATRNAAPL1   X73367 AF117570     1701bp    mRNA     PLN      03-JUN-1999
    Arabidopsis thaliana mRNA for ADP-glucose pyrophosphorylase large subunit
     (ApL1 gene).
    ADP-glucose pyrophosphorylase large; ADP-glucose pyrophosphorylase; ApL1;
     ADP-glucose pyrophosphorylase large subunit.

=========== Updated Sequence Features/Annotations  =============

AC006193    AC006193   118335bp    DNA      PLN      11-JUN-1999
    Arabidopsis thaliana chromosome I BAC F13O11 genomic sequence, complete
     sequence.
    HTG; F13O11.1; F13O11.2; F13O11.3; F13O11.4; Putative membrane related
     protein; F13O11.5; alpha1 tubulin; F13O11.6; F13O11.7; Similar to glucan
     endo-1,3-beta-glucosidase precursor; F13O11.8; F13O11.9; Ammonium
     transporter ATM1;2; F13O11.10; similar to translational activator;
     F13O11.11; F13O11.12; F13O11.13; F13O11.14; F13O11.15; F13O11.16; RNA
     polymerase sigma subunit 1; F13O11.17; F13O11.18; F13O11.19; F13O11.20;
     Putative Cytochrome P450; F13O11.21; Similar to Flavonol
     3-O-Glucosyltransferase; F13O11.22; F13O11.23; F13O11.24; Putative
     cytochrome P450; F13O11.25; F13O11.26; F13O11.27; gamma-tocopherol
     methyltransferase; F13O11.28; F13O11.29; similar to CGI-13 protein;
     F13O11.30.

AF085230    AF085230     1743bp    mRNA     PLN      04-JUN-1999
    Arabidopsis thaliana phytochelatin synthase 1 (AtPCS1) mRNA, complete
     cds.
    AtPCS1; phytochelatin synthase 1.

ATAC006225  AC006225    88249bp    DNA      PLN      05-JUN-1999
    Arabidopsis thaliana chromosome II BAC T5E7 genomic sequence, complete
     sequence.
    HTG; T5E7.1; putative multidrug resistance protein.

ATU75187    U75187      788bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP4) mRNA, complete cds.
    GLP4; germin-like protein.

ATU75188    U75188      862bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP3a) mRNA, complete cds.
    GLP3a; germin-like protein.

ATU75189    U75189      857bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP1) mRNA, complete cds.
    GLP1; germin-like protein.

ATU75190    U75190      851bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP1) mRNA, complete cds.
    GLP1; germin-like protein.

ATU75191    U75191      907bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP5) mRNA, complete cds.
    GLP5; germin-like protein.

ATU75192    U75192      731bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP2a) mRNA, complete cds.
    GLP2a; germin-like protein.

ATU75193    U75193      880bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP3b) mRNA, complete cds.
    GLP3b; germin-like protein.

ATU75195    U75195      884bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP3b) mRNA, complete cds.
    GLP3b; germin-like protein.

ATU75196    U75196      809bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP1) mRNA, complete cds.
    GLP1; germin-like protein.

ATU75197    U75197      875bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP1) mRNA, complete cds.
    GLP1; germin-like protein.

ATU75198    U75198      911bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP5) mRNA, complete cds.
    GLP5; germin-like protein.

ATU75199    U75199      893bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP5) mRNA, partial cds.
    GLP5; germin-like protein.

ATU75200    U75200      801bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP5) mRNA, complete cds.
    GLP5; germin-like protein.

ATU75201    U75201      880bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP1) mRNA, complete cds.
    GLP1; germin-like protein.

ATU75203    U75203      862bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP3a) mRNA, complete cds.
    GLP3a; germin-like protein.

ATU75204    U75204      577bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP2a) mRNA, partial cds.
    GLP2a; germin-like protein.

ATU75205    U75205      788bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP3b) mRNA, partial cds.
    GLP3b; germin-like protein.

ATU75206    U75206      879bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP1) mRNA, complete cds.
    GLP1; germin-like protein.

ATU95034    U95034      786bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP1) mRNA, complete cds.
    GLP1; germin-like protein.

ATU95035    U95035      907bp    mRNA     PLN      08-JUN-1999
    Arabidopsis thaliana germin-like protein (GLP1) mRNA, complete cds.
    GLP1; germin-like protein.

T3E15       AF147264   126087bp    DNA      PLN      10-JUN-1999
    Arabidopsis thaliana BAC T3E15.
    T3E15.13; T3E15.12; T3E15.14; T3E15.18; T3E15.7; T3E15.22; T3E15.23;
     T3E15.27; T3E15.24; T3E15.25.

T6L9        AF147265    54573bp    DNA      PLN      10-JUN-1999
    Arabidopsis thaliana BAC T6L9.
    T6L9.5; T6L9.4; T6L9.2; T6L9.1.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




More information about the Arab-gen mailing list