New Arabidopsis DNA 26-Jun-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat Jun 26 13:20:41 EST 1999


====================== New DNA Sequences =======================

AB026486    AB026486     1050bp    mRNA     PLN      22-JUN-1999
    Arabidopsis thaliana EXGT-A4 mRNA for endoxyloglucan transferase,
     complete cds.
    endoxyloglucan transferase; EXGT-A4.

AC007887    AC007887   144273bp    DNA      HTG      22-JUN-1999
    Arabidopsis thaliana chromosome 1 clone F15O4, WORKING DRAFT SEQUENCE, 13
     unordered pieces.
    HTG; HTGS_PHASE1.

AC007894    AC007894    91071bp    DNA      HTG      22-JUN-1999
    Arabidopsis thaliana chromosome 1 clone F21H2, WORKING DRAFT SEQUENCE, 3
     unordered pieces.
    HTG; HTGS_PHASE1.

AC007915    AC007915   121799bp    DNA      HTG      25-JUN-1999
    Arabidopsis thaliana chromosome 1 clone F27F5, WORKING DRAFT SEQUENCE, 8
     unordered pieces.
    HTG; HTGS_PHASE1.

AC007918    AC007918   106711bp    DNA      HTG      25-JUN-1999
    Arabidopsis thaliana chromosome 1, WORKING DRAFT SEQUENCE, 8 unordered
     pieces.
    HTG; HTGS_PHASE1.

AF048839    AF048839     2284bp    DNA      PLN      24-JUN-1999
    Arabidopsis thaliana Atmyb103 (MYB103) gene, complete cds.
    MYB103; Atmyb103.

AF057024    AF057024     1032bp    mRNA     PLN      21-JUN-1999
    Arabidopsis thaliana Ran-binding protein (siRanBP) mRNA, complete cds.
    Ran-binding protein siRanBP.

AF061416    AF061416     1996bp    DNA      PLN      21-JUN-1999
    Arabidopsis lyrata CAULIFLOWER (CAL) gene, partial sequence.
    CAL.

AF133708    AF133708     1553bp    mRNA     PLN      21-JUN-1999
    Arabidopsis thaliana PP2A regulatory subunit (TAP46) mRNA, complete cds.
    TAP46; PP2A regulatory subunit.

AF144703    AF144703      304bp    mRNA     PLN      21-JUN-1999
    Arabidopsis thaliana small zinc finger-like protein (TIM13) mRNA,
     complete cds.
    TIM13; small zinc finger-like protein.

AF150083    AF150083      518bp    mRNA     PLN      21-JUN-1999
    Arabidopsis thaliana small zinc finger-like protein (TIM8) mRNA, complete
     cds.
    TIM8; small zinc finger-like protein.

AF150093    AF150093      252bp    mRNA     PLN      21-JUN-1999
    Arabidopsis thaliana small zinc finger-like protein (TIM10) mRNA,
     complete cds.
    TIM10; small zinc finger-like protein.

AF150111    AF150111      344bp    mRNA     PLN      21-JUN-1999
    Arabidopsis thaliana small zinc finger-like protein (TIM9) mRNA, complete
     cds.
    TIM9; small zinc finger-like protein.

AF154272    AF154272     5895bp    DNA      PLN      21-JUN-1999
    Arabidopsis thaliana PINHEAD (PINHEAD) gene, complete cds.
    PINHEAD.

ATF11I11    AL079347   103150bp    DNA      PLN      18-JUN-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone F11I11 (ESSA project).
    T11I11.10; putative protein; T11I11.20; T11I11.30; T11I11.40; T11I11.50;
     T11I11.60; T11I11.70; T11I11.80; T11I11.90; chalcone synthase-like
     protein; T11I11.100; invertase-like protein; T11I11.110; peptidylprolyl
     isomerase (cyclophilin); T11I11.120; amidase-like protein; T11I11.130;
     xanthine dehydrogenase-like protein; T11I11.140; xanthine dehydrogenase;
     T11I11.150; RNA helicase (RH16); T11I11.160; T11I11.170; T11I11.180;
     T11I11.190.

ATF25G13    AL079349    89853bp    DNA      PLN      19-JUN-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone F25G13, partial sequence
     (ESSA project).
    F25G13.10; putative protein; F25G13.20; hypothetical protein; F25G13.30;
     F25G13.40; F25G13.50; F25G13.60; F25G13.70; F25G13.80; F25G13.90;
     F25G13.100; F25G13.110; serine/threonine-specific protein kinase MHK;
     F25G13.120; F25G13.130; F25G13.140; oleoyl-[acyl-carrier-protein]
     hydrolase-like protein; F25G13.150; F25G13.160; F25G13.170;
     endoxyloglucan transferase-like protein; F25G13.180; F25G13.190;
     F25G13.200.

ATH133743   AJ133743     5777bp    DNA      PLN      18-JUN-1999
    Arabidopsis thaliana ttg1 gene.
    anthocyanin biosynthesis; trichome initiation; ttg1 gene; ttg1; Ttg1
     protein.

ATH238008   AJ238008     1904bp    mRNA     PLN      18-JUN-1999
    Arabidopsis thaliana mRNA for diacylglycerol acyltransferase.
    Dgat gene; diacylglycerol acyltransferase; Dgat.

ATH242965   AJ242965     3570bp    mRNA     PLN      18-JUN-1999
    Arabidopsis thaliana mRNA for stromalin protein (SA gene).
    SA gene; stromalin protein; SA.

ATH243198   AJ243198     1820bp    mRNA     PLN      21-JUN-1999
    Arabidopsis thaliana mRNA for N-acetylglucosaminyltransferase I
     (GlcNAcT-I gene).
    GlcNAcT-I gene; glycosyl transferase; N-acetylglucosaminyltransferase I;
     GlcNAcT-I; N-acetylglucosaminyltransferase I.

ATH243221   AJ243221     2573bp    DNA      PLN      21-JUN-1999
    Arabidopsis thaliana LAX2 gene for putative AUX1-like permease, exons 1
     to 6.
    AUX1-like permease; LAX2 gene; LAX2; putative AUX1-like permease.

ATT16L4     AL079344    88011bp    DNA      PLN      17-JUN-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone T16L4 (ESSA project).
    T16L4.10; X-Pro dipeptidase-like protein (fragment); T16L4.20; arginine
     methyltransferase (pam1); T16L4.30; putative protein; T16L4.40;
     T16L4.50; UDP-N-acetylglucosamine O-acyltransferase-like protein;
     T16L4.60; T16L4.70; hypothetical protein; T16L4.80; cytidine
     deaminase-like protein; T16L4.90; T16L4.100; T16L4.110; cytidine
     deaminase 7; T16L4.120; cytidine deaminase 6 (CDA6); T16L4.130; cytidine
     deaminase 2 (CDA2); T16L4.140; cytidine deaminase 3 (CDA3); T16L4.150;
     cytidine deaminase 5 (CDA5); T16L4.160; cytidine deaminase 4 (CDA4);
     T16L4.170; T16L4.180; Thioredoxin-like protein; T16L4.190; nucleotide
     pyrophosphatase-like protein; T16L4.200; T16L4.210; T16L4.220;
     T16L4.230; T16L4.240; WD-40 repeat-like protein; T16L4.250; cytokinin
     oxidase-like protein; T16L4.260; T16L4.270.

ATT30C3     AL079350    77793bp    DNA      PLN      19-JUN-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone T30C3 (ESSA project).
    T30C3.20; putative protein; T30C3.10; T30C3.30; T30C3.40; T30C3.50;
     T30C3.60; receptor kinase-like protein; T30C3.70; T30C3.80; T30C3.90;
     gibberellin 20-oxidase-Arabidopsis thaliana.

CNU43234    U43234      622bp    DNA      PLN      21-JUN-1999
    Arabidopsis neglecta internal transcribed spacer 1, 5.8S ribosomal RNA
     gene, and internal transcribed spacer 2, complete sequence.
    internal transcribed spacer 1; 5.8S ribosomal RNA; internal transcribed
     spacer 2.

CNU52186    U52186      622bp    DNA      PLN      21-JUN-1999
    Arabidopsis neglecta internal transcribed spacer 1, 5.8S ribosomal RNA
     gene, and internal transcribed spacer 2, complete sequence.
    internal transcribed spacer 1; 5.8S ribosomal RNA; internal transcribed
     spacer 2.

CPU43235    U43235      622bp    DNA      PLN      21-JUN-1999
    Arabidopsis lyrata subsp. petraea internal transcribed spacer 1, 5.8S
     ribosomal RNA gene, and internal transcribed spacer 2, complete
     sequence.
    internal transcribed spacer 1; 5.8S ribosomal RNA; internal transcribed
     spacer 2.

CPU43236    U43236      621bp    DNA      PLN      21-JUN-1999
    Arabidopsis lyrata subsp. petraea internal transcribed spacer 1, 5.8S
     ribosomal RNA gene, and internal transcribed spacer 2, complete
     sequence.
    internal transcribed spacer 1; 5.8S ribosomal RNA; internal transcribed
     spacer 2.

CPU52189    U52189      622bp    DNA      PLN      21-JUN-1999
    Arabidopsis lyrata subsp. petraea internal transcribed spacer 1, 5.8S
     ribosomal RNA gene, and internal transcribed spacer 2, complete
     sequence.
    internal transcribed spacer 1; 5.8S ribosomal RNA; internal transcribed
     spacer 2.

CPU52190    U52190      622bp    DNA      PLN      21-JUN-1999
    Arabidopsis lyrata subsp. petraea internal transcribed spacer 1, 5.8S
     ribosomal RNA gene, and internal transcribed spacer 2, complete
     sequence.
    internal transcribed spacer 1; 5.8S ribosomal RNA; internal transcribed
     spacer 2.

CPU96103    U96103      649bp    DNA      PLN      21-JUN-1999
    Arabidopsis lyrata subsp. petraea internal transcribed spacer 1, 5.8S
     ribosomal RNA gene, and internal transcribed spacer 2, complete
     sequence.
    internal transcribed spacer 1; 5.8S ribosomal RNA; internal transcribed
     spacer 2.

F15P11      AF160760    23143bp    DNA      PLN      23-JUN-1999
    Arabidopsis thaliana BAC F15P11.

F17I23      AF160182   134784bp    DNA      PLN      20-JUN-1999
    Arabidopsis thaliana BAC F17I23.

T14A16      AF160181    27050bp    DNA      PLN      20-JUN-1999
    Arabidopsis thaliana BAC T14A16.

T17A2       AF160183    81902bp    DNA      PLN      20-JUN-1999
    Arabidopsis thaliana BAC T17A2.

T32N4       AF162444    80196bp    DNA      PLN      26-JUN-1999
    Arabidopsis thaliana BAC T32N4.

==================== Updated DNA Sequences =====================

AC006423    AC006423   125495bp    DNA      HTG      18-JUN-1999
    Arabidopsis thaliana chromosome I clone F28H19, WORKING DRAFT SEQUENCE, 7
     unordered pieces.
    HTG; HTGS_PHASE1.

AC006424    AC006424   122592bp    DNA      HTG      18-JUN-1999
    Arabidopsis thaliana chromosome I clone F9L11, WORKING DRAFT SEQUENCE, 2
     unordered pieces.
    HTG; HTGS_PHASE1.

AC006551    AC006551    99718bp    DNA      HTG      18-JUN-1999
    Arabidopsis thaliana chromosome I clone F12K8, WORKING DRAFT SEQUENCE, 4
     unordered pieces.
    HTG; HTGS_PHASE1.

AC007259    AC007259    98039bp    DNA      HTG      18-JUN-1999
    Arabidopsis thaliana chromosome I clone T28P6, WORKING DRAFT SEQUENCE, 2
     unordered pieces.
    HTG; HTGS_PHASE1.

AC007627    AC007627   172513bp    DNA      HTG      18-JUN-1999
    Arabidopsis thaliana chromosome V clone F15F15 map near 69 cm, WORKING
     DRAFT SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC007633    AC007633   106073bp    DNA      HTG      18-JUN-1999
    Arabidopsis thaliana chromosome IV clone T25P22 map near 25 cm, WORKING
     DRAFT SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC007635    AC007635   172675bp    DNA      HTG      18-JUN-1999
    Arabidopsis thaliana chromosome IV clone T32A17 map at 24.2 cm, WORKING
     DRAFT SEQUENCE, 7 unordered pieces.
    HTG; HTGS_PHASE1.

AC007651    AC007651   114935bp    DNA      PLN      19-JUN-1999
    Arabidopsis thaliana chromosome I BAC F20D23 genomic sequence, complete
     sequence.
    HTG.

AC007727    AC007727    98581bp    DNA      PLN      23-JUN-1999
    Arabidopsis thaliana chromosome 1 BAC F8K7 sequence, complete sequence.
    HTG.

ATAJ4338    AJ224338     4813bp    DNA      PLN      18-JUN-1999
    Arabidopsis thaliana ASKbeta gene, complete CDS.
    AKSbeta gene; shaggy-like kinase beta; ASKbeta.

=========== Updated Sequence Features/Annotations  =============

AC007323    AC007323    85096bp    DNA      HTG      22-JUN-1999
    Arabidopsis thaliana chromosome 1 clone T25K16, WORKING DRAFT SEQUENCE, 3
     ordered pieces.
    HTG; HTGS_PHASE2.

AF024623    AF024623     1691bp    mRNA     PLN      24-JUN-1999
    Arabidopsis thaliana galactose kinase (GAL1) mRNA, complete cds.
    GAL1; galactose kinase.

ATAC004401  AC004401    94038bp    DNA      PLN      19-JUN-1999
    Arabidopsis thaliana chromosome II BAC F21P24 genomic sequence, complete
     sequence.
    HTG; F21P24.1; putative chloroplast envelope Ca2+-ATPase, 5' partial;
     F21P24.2; F21P24.3; putative serine carboxypeptidase I; F21P24.4;
     F21P24.5; F21P24.6; F21P24.7; F21P24.8; tRNA-Met; F21P24.9; putative
     protein kinase; F21P24.10; F21P24.11; F21P24.12; putative
     N-acetyltransferase; F21P24.13; putative casein kinase II catalytic
     subunit; F21P24.14; F21P24.15; F21P24.16; F21P24.17; putative LEA
     protein; F21P24.18; F21P24.19; putative proline-rich protein; F21P24.20;
     F21P24.21; putative metal ion transporter (Nramp).

ATAC007134  AC007134    84544bp    DNA      PLN      18-JUN-1999
    Arabidopsis thaliana chromosome II BAC F7H1 genomic sequence, complete
     sequence.
    HTG; F7H1.1; F7H1.2; similar to retroviral aspartyl proteases; F7H1.3;
     similar to replication protein A1; F7H1.4; F7H1.5; F7H1.6; F7H1.7;
     F7H1.8; class 1 non-symbiotic hemoglobin (AHB1); F7H1.9; F7H1.10;
     F7H1.11; F7H1.13; putative reverse transcriptase; F7H1.14; putative
     sugar transporter; F7H1.15; F7H1.16; F7H1.17; F7H1.18; F7H1.19; putative
     MuDR transposon; F7H1.20; F7H1.21; F7H1.22; putative nonclathrin coat
     protein; F7H1.23; F7H1.24; F7H1.25; putative beta-1,3-endoglucanase, 5'
     partial.

ATDHDS      X72971     1469bp    mRNA     PLN      21-JUN-1999
    Arabidopsis thaliana mRNA for dihydrodipicolinate synthase
     (2,3-dihydrodipicolinate gene0.
    chloroplast; dihydrodipicolinate synthase; 2,3-dihydrodipicolinate.

ATF7H19     AL031018   139316bp    DNA      PLN      21-JUN-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSA project).
    F7H19.10; putative protein; F7H19.20; F7H19.30; F7H19.40; hypothetical
     protein; F7H19.50; anthocyanidin synthase-like protein; F7H19.60;
     putative leucoanthocyanidin dioxygenase (LDOX); F7H19.70; F7H19.80;
     F7H19.90; putative fizzy-related protein; F7H19.100; F7H19.110;
     dihydroorotase; F7H19.120; putative cdc2 kinase homolog; F7H19.130;
     putative MADS Box / AGL protein; F7H19.140; F7H19.150; F7H19.160;
     F7H19.170; F7H19.181; F7H19.200; F7H19.210; F7H19.220; F7H19.230;
     F7H19.240; putative serine/threonine kinase; F7H19.250; F7H19.260;
     putative membrane protein; F7H19.270; F7H19.280; F7H19.290;
     gamma-glutamylcysteine synthetase; F7H19.300; F7H19.310; F7H19.320;
     protein kinase-like protein; F7H19.330; serine/threonine kinase-like
     protein.

ATH17593    Y17593     2837bp    DNA      PLN      21-JUN-1999
    Arabidopsis thaliana MVD1 gene, exons 1 to 9.
    mevalonate diphosphate decarboxylase; MVD1 gene; MVD1.

ATHATPK     D10910     4719bp    DNA      PLN      17-JUN-1999
    Arabidopsis thaliana Atpk7 gene for serine/threonine protein kinase,
     complete cds.
    plant protein kinase; serine/threonine protein kinase; Atpk7.

ATHCER1     D64155     2133bp    mRNA     PLN      19-JUN-1999
    Arabidopsis thaliana CER1 mRNA for possible aldehyde decarbonylase,
     complete cds.
    CER1; aldehyde decarbonylase; possible aldehyde decarbonylase.

ATY14325    Y14325     1694bp    mRNA     PLN      21-JUN-1999
    Arabidopsis thaliana mRNA for mevalonate diphosphate decarboxylase.
    mevalonate diphosphate decarboxylase; MVD1 gene; MVD1.

F9L1        AC007591   141984bp    DNA      PLN      19-JUN-1999
    Arabidopsis thaliana chromosome 1 BAC F9L1 sequence, complete sequence.
    HTG; F9L1.1; F9L1.2; tRNA-Asn; F9L1.3; F9L1.4; F9L1.5; F9L1.6; F9L1.7;
     F9L1.8; F9L1.9; F9L1.10; F9L1.11; F9L1.12; F9L1.13; F9L1.14; F9L1.15;
     F9L1.16; F9L1.17; F9L1.18; F9L1.19; F9L1.20; F9L1.21; F9L1.22; F9L1.23;
     F9L1.24; F9L1.25; F9L1.26; F9L1.27; F9L1.28; F9L1.29; F9L1.30; F9L1.31;
     F9L1.32; F9L1.33; F9L1.34; F9L1.35; F9L1.36; F9L1.37; F9L1.38; F9L1.39;
     F9L1.40; tRNA-Trp; F9L1.41; F9L1.42; F9L1.43; F9L1.44.

T1N24       AF149413   127053bp    DNA      PLN      21-JUN-1999
    Arabidopsis thaliana BAC T1N24.
    T1N24.15; T1N24.16; T1N24.14; T1N24.13; T1N24.12; T1N24.11; T1N24.10;
     T1N24.9; T1N24.17; T1N24.8; T1N24.7; T1N24.6; T1N24.18; T1N24.19;
     T1N24.5; T1N24.20; T1N24.4; T1N24.3; T1N24.22; T1N24.2; T1N24.21;
     T1N24.23; T1N24.24; T1N24.25; T1N24.1.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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