New Arabidopsis DNA 15-May-1999
AtDB Project
arabidopsis-seq at genome.stanford.edu
Sat May 15 12:55:11 EST 1999
====================== New DNA Sequences =======================
A71562 A71562 5373bp DNA PAT 07-MAY-1999
Sequence 1 from Patent WO9813505.
A71588 A71588 350bp DNA PAT 07-MAY-1999
Sequence 21 from Patent WO9813478.
A71589 A71589 278bp DNA PAT 07-MAY-1999
Sequence 22 from Patent WO9813478.
A71590 A71590 345bp DNA PAT 07-MAY-1999
Sequence 23 from Patent WO9813478.
A71591 A71591 695bp DNA PAT 07-MAY-1999
Sequence 24 from Patent WO9813478.
A71592 A71592 495bp DNA PAT 07-MAY-1999
Sequence 25 from Patent WO9813478.
A71593 A71593 204bp DNA PAT 07-MAY-1999
Sequence 26 from Patent WO9813478.
A71594 A71594 491bp DNA PAT 07-MAY-1999
Sequence 27 from Patent WO9813478.
A71595 A71595 407bp DNA PAT 07-MAY-1999
Sequence 28 from Patent WO9813478.
A71596 A71596 360bp DNA PAT 07-MAY-1999
Sequence 29 from Patent WO9813478.
A71597 A71597 427bp DNA PAT 07-MAY-1999
Sequence 30 from Patent WO9813478.
A71598 A71598 437bp DNA PAT 07-MAY-1999
Sequence 31 from Patent WO9813478.
A71599 A71599 441bp DNA PAT 07-MAY-1999
Sequence 32 from Patent WO9813478.
A71600 A71600 502bp DNA PAT 07-MAY-1999
Sequence 33 from Patent WO9813478.
A71601 A71601 400bp DNA PAT 07-MAY-1999
Sequence 34 from Patent WO9813478.
A71602 A71602 383bp DNA PAT 07-MAY-1999
Sequence 35 from Patent WO9813478.
A71603 A71603 354bp DNA PAT 07-MAY-1999
Sequence 36 from Patent WO9813478.
A71604 A71604 403bp DNA PAT 07-MAY-1999
Sequence 37 from Patent WO9813478.
A71605 A71605 260bp DNA PAT 07-MAY-1999
Sequence 38 from Patent WO9813478.
A71606 A71606 605bp DNA PAT 07-MAY-1999
Sequence 39 from Patent WO9813478.
A71607 A71607 464bp DNA PAT 07-MAY-1999
Sequence 40 from Patent WO9813478.
A71608 A71608 386bp DNA PAT 07-MAY-1999
Sequence 41 from Patent WO9813478.
A71609 A71609 377bp DNA PAT 07-MAY-1999
Sequence 42 from Patent WO9813478.
A71610 A71610 377bp DNA PAT 07-MAY-1999
Sequence 43 from Patent WO9813478.
A71611 A71611 346bp DNA PAT 07-MAY-1999
Sequence 44 from Patent WO9813478.
A71612 A71612 261bp DNA PAT 07-MAY-1999
Sequence 45 from Patent WO9813478.
A71613 A71613 478bp DNA PAT 07-MAY-1999
Sequence 46 from Patent WO9813478.
A71614 A71614 579bp DNA PAT 07-MAY-1999
Sequence 47 from Patent WO9813478.
A71637 A71637 1757bp DNA PAT 07-MAY-1999
Sequence 70 from Patent WO9813478.
A71639 A71639 1527bp DNA PAT 07-MAY-1999
Sequence 72 from Patent WO9813478.
A71641 A71641 1530bp DNA PAT 07-MAY-1999
Sequence 74 from Patent WO9813478.
AB026987 AB026987 3172bp mRNA PLN 12-MAY-1999
Arabidopsis thaliana mRNA for a dynamin-like protein ADL3, complete cds.
a dynamin-like protein ADL3; adl3.
AC007519 AC007519 171705bp DNA HTG 09-MAY-1999
Arabidopsis thaliana chromosome 1 BAC F16N3 sequence, WORKING DRAFT
SEQUENCE, 2 ordered pieces.
HTG; HTGS_PHASE2.
AC007534 AC007534 118165bp DNA HTG 13-MAY-1999
Genomic sequence for Arabidopsis thaliana BAC F7F22 from chromosome I,
WORKING DRAFT SEQUENCE, 3 unordered pieces.
HTG; HTGS_PHASE1.
AF085231 AF085231 3158bp DNA PLN 11-MAY-1999
Arabidopsis thaliana cadmium resistance factor 1 (CRF1) gene, complete
cds.
CRF1; cadmium resistance factor 1.
AF117125 AF117125 2534bp mRNA PLN 13-MAY-1999
Arabidopsis thaliana endoplasmic reticulum-type calcium-transporting
ATPase 4 (ECA4) mRNA, partial cds.
ECA4; endoplasmic reticulum-type calcium-transporting ATPase 4.
AF117296 AF117296 3275bp mRNA PLN 13-MAY-1999
Arabidopsis thaliana putative endoplasmic reticulum-type
calcium-transporting ATPase 3 (ECA3) mRNA, complete cds.
ECA3; putative endoplasmic reticulum-type calcium-transporting ATPase 3.
AF135455 AF135455 3516bp mRNA PLN 13-MAY-1999
Arabidopsis thaliana phytochrome A supressor spa1 (SPA1) mRNA, complete
cds.
SPA1; phytochrome A supressor spa1.
AF140219 AF140219 949bp mRNA PLN 11-MAY-1999
Arabidopsis thaliana nuclear cap-binding protein (CBP20) mRNA, complete
cds.
CBP20; nuclear cap-binding protein.
ATF18B3 AL049862 89469bp DNA PLN 13-MAY-1999
Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3 (ESSA project).
F18B3.10; protein kinase ATN1 like protein; F18B3.20; UTP-glucose
glucosyltransferase like protein; F18B3.30; putative protein; F18B3.40;
glycosyltransferase-like protein; F18B3.50; calmodulin-like protein;
F18B3.60; F18B3.70; putative LEA protein; F18B3.80; F18B3.90; F18B3.100;
putative protein 1 photosystem II oxygen-evolving complex; F18B3.110;
putative cold acclimation protein; F18B3.120; F18B3.130; F18B3.140;
putative clathrin coat assembly protein; F18B3.150; transcription
factor-like protein; F18B3.160; putative DNA-3-methyladenine
glycosidase; F18B3.170; F18B3.180; hypothetical protein; F18B3.190;
F18B3.200; F18B3.210; putative mitochondrial protein; F18B3.220;
F18B3.230; putative disease resistance protein; F18B3.240; putative tRNA
synthetase.
ATF26K10 AL049803 49311bp DNA HTG 07-MAY-1999
Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone
ATF26K10 (ESSAII project), WORKING DRAFT SEQUENCE.
HTG; HTGS_PHASE1.
ATH011528 AJ011528 1846bp mRNA PLN 12-MAY-1999
Arabidopsis thaliana mRNA for DBF2 protein.
Dbf2 gene; DBF2 protein; Dbf2.
ATH012421 AJ012421 1488bp DNA PLN 12-MAY-1999
Arabidopsis thaliana wak3 gene, partial.
wall-associated; receptor; wak3 gene; wall-associated kinase 3; wak3.
ATH012422 AJ012422 2104bp DNA PLN 12-MAY-1999
Arabidopsis thaliana wak5 gene, partial.
wall-associated; receptor; wak5 gene; wall-associated kinase 5; wak5.
ATH012423 AJ012423 2383bp mRNA PLN 12-MAY-1999
Arabidopsis thaliana mRNA for wall-associated kinase 2.
wall-associated; receptor; wak2 gene; wall-associated kinase 2; wak2.
ATH012459 AJ012459 575bp mRNA PLN 07-MAY-1999
Arabidopsis thaliana mRNA for AGP6 protein.
agp6 gene; AGP6 protein; agp6.
ATH012586 AJ012586 1690bp mRNA PLN 10-MAY-1999
Arabidopsis thaliana mRNA for sulfate adenylyltransferase.
aps4 gene; sulfate adenylyltransferase; aps4.
ATH131214 AJ131214 5164bp DNA PLN 07-MAY-1999
Arabidopsis thaliana srp30 gene, exons 1-12.
SF2/ASF-like splicing modulator; srp30 gene; srp30; SF2/ASF-like splicing
modulator Srp30; SF2/ASF-like splicing modulator Srp30, variant 1.
T19J18 AF149414 43175bp DNA PLN 13-MAY-1999
Arabidopsis thaliana BAC T19J18.
T1N24 AF149413 127053bp DNA PLN 13-MAY-1999
Arabidopsis thaliana BAC T1N24.
==================== Updated DNA Sequences =====================
ATAC006219 AC006219 82532bp DNA PLN 12-MAY-1999
Arabidopsis thaliana chromosome II BAC T14C8 genomic sequence, complete
sequence.
HTG; T14C8.1; T14C8.2; T14C8.3; T14C8.4; T14C8.5; T14C8.6; T14C8.7;
T14C8.8; T14C8.9; T14C8.10.
AC006535 AC006535 98616bp DNA PLN 12-MAY-1999
Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I,
complete sequence.
HTG.
AC006837 AC006837 70617bp DNA HTG 14-MAY-1999
Arabidopsis thaliana 'IGF' BAC 'F23H14' genomic sequence near marker
'mi398', WORKING DRAFT SEQUENCE, 16 unordered pieces.
HTG; HTGS_PHASE1.
AC007190 AC007190 86799bp DNA HTG 13-MAY-1999
Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I,
WORKING DRAFT SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC007288 AC007288 91491bp DNA HTG 14-MAY-1999
Arabidopsis thaliana 'IGF' BAC 'F10C8' genomic sequence near marker
'PR1', WORKING DRAFT SEQUENCE, 13 unordered pieces.
HTG; HTGS_PHASE1.
AC007296 AC007296 91566bp DNA PLN 08-MAY-1999
Arabidopsis thaliana chromosome 1 BAC F25C20 sequence, complete sequence.
HTG.
AC007357 AC007357 99758bp DNA PLN 12-MAY-1999
Arabidopsis thaliana chromosome 1 BAC F3F19 sequence, complete sequence.
HTG.
AC007396 AC007396 97208bp DNA HTG 13-MAY-1999
Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I,
WORKING DRAFT SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
ATAC006202 AC006202 73079bp DNA PLN 11-MAY-1999
Arabidopsis thaliana chromosome II BAC T3B23 genomic sequence, complete
sequence.
HTG; T3B23.1; T3B23.2; T3B23.3; T3B23.4; putative transcription
regulatory protein; T3B23.5; T3B23.6; T3B23.7; putative cyclic
nucleotide and calmodulin-regulated ion channel protein; T3B23.8;
putative serine/threonine protein kinase; T3B23.9; putative
hydroxyproline-rich glycoprotein; T3B23.10; T3B23.11; putative
chloroplast nucleoid DNA binding protein; T3B23.12; putative carbonic
anhydrase; T3B23.13; T3B23.14; copper/zinc superoxide dismutase, 5'
partial.
ATAC006219 AC006219 82532bp DNA PLN 12-MAY-1999
Arabidopsis thaliana chromosome II BAC T14C8 genomic sequence, complete
sequence.
HTG; T14C8.1; T14C8.2; T14C8.3; T14C8.4; T14C8.5; T14C8.6; T14C8.7;
T14C8.8; T14C8.9; T14C8.10.
ATAC006264 AC006264 93220bp DNA PLN 12-MAY-1999
Arabidopsis thaliana chromosome II BAC F26H11 genomic sequence, complete
sequence.
HTG; F26H11.1; putative vsf-1 transcription factor (basic-leucine zipper
transcription factor family), 5'; putative vsf-1 transcription factor
(basic-leucine zipper transcription factor family), 5' partial;
F26H11.2; putative auxin-induced protein; F26H11.3; F26H11.4; F26H11.5;
putative ER lumen protein retaining receptor; F26H11.6; F26H11.7;
putative triosephosphate isomerase; F26H11.8; signal sequence receptor,
alpha subunit (SSR-alpha); F26H11.9; putative XAP-5 protein [Homo
sapiens]; F26H11.10; putative proline-rich protein; F26H11.11;
cyclophilin (CYP2); F26H11.12; F26H11.13; putative disease resistance
response protein; F26H11.14; F26H11.15; F26H11.16; F26H11.17; F26H11.18;
glycine-rich cell wall structural protein 2 (AtGRP2); F26H11.19;
putative aromatic amino acid permease; F26H11.20; putative C2-domain
protein (prosite: PD0C00380); F26H11.21; F26H11.22; putative major
intrinsic protein (nodulin-26 protein); F26H11.23; F26H11.24; putative
pol polyprotein; F26H11.25; F26H11.26; F26H11.27; putative cytoskeletal
protein; F26H11.28; pEARLI 4 protein; F26H11.29; putative pEARLI 4-like
protein; F26H11.30.
=========== Updated Sequence Features/Annotations =============
AB003139 AB003139 1695bp DNA PLN 15-MAY-1999
Arabidopsis thaliana transgenic line A DNA, 5'-junction region.
phosphinothricin acetyltransferase; bar.
AB003140 AB003140 2256bp DNA PLN 15-MAY-1999
Arabidopsis thaliana transgenic line A DNA, 3'-junction region.
AB003141 AB003141 4475bp DNA PLN 15-MAY-1999
Arabidopsis thaliana transgenic line B DNA.
AB003142 AB003142 5984bp DNA PLN 15-MAY-1999
Arabidopsis thaliana transgenic line C DNA.
hygromycin phosphotransferase; hpt.
AB022891 AB022891 3873bp DNA PLN 08-MAY-1999
Arabidopsis thaliana DNA for glucose-1-phosphate adenylyltransferase,
complete cds.
adg2; glucose-1-phosphate adenylyltransferase.
AF013466 AF013466 2675bp mRNA PLN 13-MAY-1999
Arabidopsis thaliana auxin response factor 4 (ARF4) mRNA, complete cds.
ARF4; auxin response factor 4.
AF013467 AF013467 3832bp mRNA PLN 13-MAY-1999
Arabidopsis thaliana ARF6 (ARF6) mRNA, complete cds.
ARF6.
AF019927 AF019927 1572bp mRNA PLN 14-MAY-1999
Arabidopsis thaliana GSK3/shaggy-like protein kinase (GSK1) mRNA,
complete cds.
GSK1; GSK3/shaggy-like protein kinase.
AF033586 AF033586 709bp mRNA PLN 13-MAY-1999
Arabidopsis thaliana 9G8-like SR protein (SRZ22) mRNA, complete cds.
SRZ22; 9G8-like SR protein.
AF033587 AF033587 998bp mRNA PLN 13-MAY-1999
Arabidopsis thaliana SRZ21 mRNA, complete cds.
SRZ21.
AF042195 AF042195 4044bp mRNA PLN 13-MAY-1999
Arabidopsis thaliana auxin response factor 7 (ARF7) mRNA, complete cds.
ARF7; auxin response factor 7.
AF042196 AF042196 2817bp mRNA PLN 13-MAY-1999
Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete cds.
ARF8; auxin response factor 8.
AF047834 AF047834 1508bp mRNA PLN 14-MAY-1999
Arabidopsis thaliana 4-hydroxyphenylpyruvate dioxygenase mRNA, complete
cds.
4-hydroxyphenylpyruvate dioxygenase.
AF074021 AF074021 103632bp DNA PLN 11-MAY-1999
Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence.
HTG; F4H6.7; hypothetical protein; F4H6.8; putative transposon protein;
F4H6.9; putative receptor-like protein kinase; F4H6.10; F4H6.11;
F4H6.12; putative polyprotein; F4H6.13; 5'-adenylylsulfate reductase;
F4H6.14; putative symbiosis-related protein; F4H6.15.
AF076243 AF076243 99384bp DNA PLN 11-MAY-1999
Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete
sequence.
HTG; T26N6.1; T26N6.2; putative polyprotein; T26N6.3; putative transposon
protein; T26N6.4; T26N6.5; T26N6.6; putative DNA-binding protein;
T26N6.7; putative aspartic protease; T26N6.9; pmp22 peroxisomal membrane
protein; T26N6.8; hypothetical protein; T26N6.10; putative receptor-like
protein kinase; T26N6.11; T26N6.12; T26N6.13; T26N6.14; T26N6.15;
T26N6.16.
AF082176 AF082176 2292bp mRNA PLN 13-MAY-1999
Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete cds.
ARF9; auxin response factor 9.
ATF7K2 AL033545 90933bp DNA PLN 10-MAY-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone F7K2 (ESSAII project).
F7K2_10; hypothetical protein (fragment); F7K2_20; hypothetical protein;
F7K2_30; F7K2_40; extensin like protein; F7K2_50; extensin-like protein;
F7K2_60; putative glycine-rich protein; F7K2_70; RCc3-like protein;
F7K2_80; putative protein; F7K2_90; F7K2_100; F7K2_110; F7K2_120;
F7K2_130; F7K2_140; F7K2_150; adenine phosphoribosyltransferase (EC
2.4.2.7)-like protein; F7K2_160; F7K2_170; trehalose-6-phosphate
phosphatase-like protein; F7K2_180; F7K2_190; F7K2_200; F7K2_210;
F7K2_220; F7K2_230; F7K2_240; F7K2_250.
ATM4E13 AL022023 80346bp DNA PLN 07-MAY-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone M4E13 (ESSAII project).
M4E13.10; EF-1 alpha-like protein (fragment); M4E13.20; cyclophilin-like
protein; M4E13.30; actin depolymerizing factor-like protein; M4E13.40;
subtilisin proteinase-like; M4E13.50; MYB-like protein; M4E13.60;
L-ascorbate peroxidase; M4E13.70; beta-galactosidase-like protein;
M4E13.80; Rho1Ps homolog/ Rac-like protein; M4E13.90; protein
kinase-like; M4E13.100; putative protein; M4E13.110; WD-40 repeat
protein (MSI3); M4E13.120; M4E13.130; M4E13.135; M4E13.140; catalase;
M4E13.150; plasma membrane intrinsic protein (SIMIP); M4E13.160;
M4E13.170; M4E13.180; M4E13.190; hypothetical protein.
ATU88061 U88061 876bp mRNA PLN 14-MAY-1999
Arabidopsis thaliana SNF5 homolog BSH (bsh) mRNA, complete cds.
bsh; SNF5 homolog BSH.
ATU92460 U92460 7079bp DNA PLN 11-MAY-1999
Arabidopsis thaliana 12-oxophytodienoate reductase OPR1 and
12-oxophytodienoate reductase OPR2 genes, complete cds.
12-oxophytodienoate reductase OPR1; 12-oxophytodienoate reductase OPR2.
F10A2 AF147259 123080bp DNA PLN 11-MAY-1999
Arabidopsis thaliana BAC F10A2.
F10A2.16; F10A2.15; F10A2.14; F10A2.13; F10A2.17; F10A2.10; F10A2.9;
F10A2.8; F10A2.7; F10A2.4; F10A2.3; F10A2.2; F10A2.1.
F14G16 AF147260 63292bp DNA PLN 11-MAY-1999
Arabidopsis thaliana BAC F14G16.
F21I2 AF147261 94905bp DNA PLN 11-MAY-1999
Arabidopsis thaliana BAC F21I2.
F28D6 AF147262 112629bp DNA PLN 11-MAY-1999
Arabidopsis thaliana BAC F28D6.
T1J24 AF147263 122529bp DNA PLN 11-MAY-1999
Arabidopsis thaliana BAC T1J24.
T23K8 AC007230 53090bp DNA PLN 13-MAY-1999
Arabidopsis thaliana chromosome 1 BAC T23K8 sequence, complete sequence.
HTG; T23K8.1; T23K8.2; T23K8.3; T23K8.4; T23K8.5; T23K8.6; T23K8.7;
T23K8.8; T23K8.9; T23K8.10; T23K8.11; T23K8.12; T23K8.13; T23K8.14;
T23K8.15.
T3E15 AF147264 126087bp DNA PLN 11-MAY-1999
Arabidopsis thaliana BAC T3E15.
T6L9 AF147265 54573bp DNA PLN 11-MAY-1999
Arabidopsis thaliana BAC T6L9.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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