New Arabidopsis DNA 15-May-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat May 15 12:55:11 EST 1999


====================== New DNA Sequences =======================

A71562      A71562     5373bp    DNA      PAT      07-MAY-1999
    Sequence 1 from Patent WO9813505.

A71588      A71588      350bp    DNA      PAT      07-MAY-1999
    Sequence 21 from Patent WO9813478.

A71589      A71589      278bp    DNA      PAT      07-MAY-1999
    Sequence 22 from Patent WO9813478.

A71590      A71590      345bp    DNA      PAT      07-MAY-1999
    Sequence 23 from Patent WO9813478.

A71591      A71591      695bp    DNA      PAT      07-MAY-1999
    Sequence 24 from Patent WO9813478.

A71592      A71592      495bp    DNA      PAT      07-MAY-1999
    Sequence 25 from Patent WO9813478.

A71593      A71593      204bp    DNA      PAT      07-MAY-1999
    Sequence 26 from Patent WO9813478.

A71594      A71594      491bp    DNA      PAT      07-MAY-1999
    Sequence 27 from Patent WO9813478.

A71595      A71595      407bp    DNA      PAT      07-MAY-1999
    Sequence 28 from Patent WO9813478.

A71596      A71596      360bp    DNA      PAT      07-MAY-1999
    Sequence 29 from Patent WO9813478.

A71597      A71597      427bp    DNA      PAT      07-MAY-1999
    Sequence 30 from Patent WO9813478.

A71598      A71598      437bp    DNA      PAT      07-MAY-1999
    Sequence 31 from Patent WO9813478.

A71599      A71599      441bp    DNA      PAT      07-MAY-1999
    Sequence 32 from Patent WO9813478.

A71600      A71600      502bp    DNA      PAT      07-MAY-1999
    Sequence 33 from Patent WO9813478.

A71601      A71601      400bp    DNA      PAT      07-MAY-1999
    Sequence 34 from Patent WO9813478.

A71602      A71602      383bp    DNA      PAT      07-MAY-1999
    Sequence 35 from Patent WO9813478.

A71603      A71603      354bp    DNA      PAT      07-MAY-1999
    Sequence 36 from Patent WO9813478.

A71604      A71604      403bp    DNA      PAT      07-MAY-1999
    Sequence 37 from Patent WO9813478.

A71605      A71605      260bp    DNA      PAT      07-MAY-1999
    Sequence 38 from Patent WO9813478.

A71606      A71606      605bp    DNA      PAT      07-MAY-1999
    Sequence 39 from Patent WO9813478.

A71607      A71607      464bp    DNA      PAT      07-MAY-1999
    Sequence 40 from Patent WO9813478.

A71608      A71608      386bp    DNA      PAT      07-MAY-1999
    Sequence 41 from Patent WO9813478.

A71609      A71609      377bp    DNA      PAT      07-MAY-1999
    Sequence 42 from Patent WO9813478.

A71610      A71610      377bp    DNA      PAT      07-MAY-1999
    Sequence 43 from Patent WO9813478.

A71611      A71611      346bp    DNA      PAT      07-MAY-1999
    Sequence 44 from Patent WO9813478.

A71612      A71612      261bp    DNA      PAT      07-MAY-1999
    Sequence 45 from Patent WO9813478.

A71613      A71613      478bp    DNA      PAT      07-MAY-1999
    Sequence 46 from Patent WO9813478.

A71614      A71614      579bp    DNA      PAT      07-MAY-1999
    Sequence 47 from Patent WO9813478.

A71637      A71637     1757bp    DNA      PAT      07-MAY-1999
    Sequence 70 from Patent WO9813478.

A71639      A71639     1527bp    DNA      PAT      07-MAY-1999
    Sequence 72 from Patent WO9813478.

A71641      A71641     1530bp    DNA      PAT      07-MAY-1999
    Sequence 74 from Patent WO9813478.

AB026987    AB026987     3172bp    mRNA     PLN      12-MAY-1999
    Arabidopsis thaliana mRNA for a dynamin-like protein ADL3, complete cds.
    a dynamin-like protein ADL3; adl3.

AC007519    AC007519   171705bp    DNA      HTG      09-MAY-1999
    Arabidopsis thaliana chromosome 1 BAC F16N3 sequence, WORKING DRAFT
     SEQUENCE, 2 ordered pieces.
    HTG; HTGS_PHASE2.

AC007534    AC007534   118165bp    DNA      HTG      13-MAY-1999
    Genomic sequence for Arabidopsis thaliana BAC F7F22 from chromosome I,
     WORKING DRAFT SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AF085231    AF085231     3158bp    DNA      PLN      11-MAY-1999
    Arabidopsis thaliana cadmium resistance factor 1 (CRF1) gene, complete
     cds.
    CRF1; cadmium resistance factor 1.

AF117125    AF117125     2534bp    mRNA     PLN      13-MAY-1999
    Arabidopsis thaliana endoplasmic reticulum-type calcium-transporting
     ATPase 4 (ECA4) mRNA, partial cds.
    ECA4; endoplasmic reticulum-type calcium-transporting ATPase 4.

AF117296    AF117296     3275bp    mRNA     PLN      13-MAY-1999
    Arabidopsis thaliana putative endoplasmic reticulum-type
     calcium-transporting ATPase 3 (ECA3) mRNA, complete cds.
    ECA3; putative endoplasmic reticulum-type calcium-transporting ATPase 3.

AF135455    AF135455     3516bp    mRNA     PLN      13-MAY-1999
    Arabidopsis thaliana phytochrome A supressor spa1 (SPA1) mRNA, complete
     cds.
    SPA1; phytochrome A supressor spa1.

AF140219    AF140219      949bp    mRNA     PLN      11-MAY-1999
    Arabidopsis thaliana nuclear cap-binding protein (CBP20) mRNA, complete
     cds.
    CBP20; nuclear cap-binding protein.

ATF18B3     AL049862    89469bp    DNA      PLN      13-MAY-1999
    Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3 (ESSA project).
    F18B3.10; protein kinase ATN1 like protein; F18B3.20; UTP-glucose
     glucosyltransferase like protein; F18B3.30; putative protein; F18B3.40;
     glycosyltransferase-like protein; F18B3.50; calmodulin-like protein;
     F18B3.60; F18B3.70; putative LEA protein; F18B3.80; F18B3.90; F18B3.100;
     putative protein 1 photosystem II oxygen-evolving complex; F18B3.110;
     putative cold acclimation protein; F18B3.120; F18B3.130; F18B3.140;
     putative clathrin coat assembly protein; F18B3.150; transcription
     factor-like protein; F18B3.160; putative DNA-3-methyladenine
     glycosidase; F18B3.170; F18B3.180; hypothetical protein; F18B3.190;
     F18B3.200; F18B3.210; putative mitochondrial protein; F18B3.220;
     F18B3.230; putative disease resistance protein; F18B3.240; putative tRNA
     synthetase.

ATF26K10    AL049803    49311bp    DNA      HTG      07-MAY-1999
    Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone
     ATF26K10 (ESSAII project), WORKING DRAFT SEQUENCE.
    HTG; HTGS_PHASE1.

ATH011528   AJ011528     1846bp    mRNA     PLN      12-MAY-1999
    Arabidopsis thaliana mRNA for DBF2 protein.
    Dbf2 gene; DBF2 protein; Dbf2.

ATH012421   AJ012421     1488bp    DNA      PLN      12-MAY-1999
    Arabidopsis thaliana wak3 gene, partial.
    wall-associated; receptor; wak3 gene; wall-associated kinase 3; wak3.

ATH012422   AJ012422     2104bp    DNA      PLN      12-MAY-1999
    Arabidopsis thaliana wak5 gene, partial.
    wall-associated; receptor; wak5 gene; wall-associated kinase 5; wak5.

ATH012423   AJ012423     2383bp    mRNA     PLN      12-MAY-1999
    Arabidopsis thaliana mRNA for wall-associated kinase 2.
    wall-associated; receptor; wak2 gene; wall-associated kinase 2; wak2.

ATH012459   AJ012459      575bp    mRNA     PLN      07-MAY-1999
    Arabidopsis thaliana mRNA for AGP6 protein.
    agp6 gene; AGP6 protein; agp6.

ATH012586   AJ012586     1690bp    mRNA     PLN      10-MAY-1999
    Arabidopsis thaliana mRNA for sulfate adenylyltransferase.
    aps4 gene; sulfate adenylyltransferase; aps4.

ATH131214   AJ131214     5164bp    DNA      PLN      07-MAY-1999
    Arabidopsis thaliana srp30 gene, exons 1-12.
    SF2/ASF-like splicing modulator; srp30 gene; srp30; SF2/ASF-like splicing
     modulator Srp30; SF2/ASF-like splicing modulator Srp30, variant 1.

T19J18      AF149414    43175bp    DNA      PLN      13-MAY-1999
    Arabidopsis thaliana BAC T19J18.

T1N24       AF149413   127053bp    DNA      PLN      13-MAY-1999
    Arabidopsis thaliana BAC T1N24.

==================== Updated DNA Sequences =====================

ATAC006219  AC006219    82532bp    DNA      PLN      12-MAY-1999
    Arabidopsis thaliana chromosome II BAC T14C8 genomic sequence, complete
     sequence.
    HTG; T14C8.1; T14C8.2; T14C8.3; T14C8.4; T14C8.5; T14C8.6; T14C8.7;
     T14C8.8; T14C8.9; T14C8.10.

AC006535    AC006535    98616bp    DNA      PLN      12-MAY-1999
    Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I,
     complete sequence.
    HTG.

AC006837    AC006837    70617bp    DNA      HTG      14-MAY-1999
    Arabidopsis thaliana 'IGF' BAC 'F23H14' genomic sequence near marker
     'mi398', WORKING DRAFT SEQUENCE, 16 unordered pieces.
    HTG; HTGS_PHASE1.

AC007190    AC007190    86799bp    DNA      HTG      13-MAY-1999
    Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I,
     WORKING DRAFT SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC007288    AC007288    91491bp    DNA      HTG      14-MAY-1999
    Arabidopsis thaliana 'IGF' BAC 'F10C8' genomic sequence near marker
     'PR1', WORKING DRAFT SEQUENCE, 13 unordered pieces.
    HTG; HTGS_PHASE1.

AC007296    AC007296    91566bp    DNA      PLN      08-MAY-1999
    Arabidopsis thaliana chromosome 1 BAC F25C20 sequence, complete sequence.
    HTG.

AC007357    AC007357    99758bp    DNA      PLN      12-MAY-1999
    Arabidopsis thaliana chromosome 1 BAC F3F19 sequence, complete sequence.
    HTG.

AC007396    AC007396    97208bp    DNA      HTG      13-MAY-1999
    Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I,
     WORKING DRAFT SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC006202  AC006202    73079bp    DNA      PLN      11-MAY-1999
    Arabidopsis thaliana chromosome II BAC T3B23 genomic sequence, complete
     sequence.
    HTG; T3B23.1; T3B23.2; T3B23.3; T3B23.4; putative transcription
     regulatory protein; T3B23.5; T3B23.6; T3B23.7; putative cyclic
     nucleotide and calmodulin-regulated ion channel protein; T3B23.8;
     putative serine/threonine protein kinase; T3B23.9; putative
     hydroxyproline-rich glycoprotein; T3B23.10; T3B23.11; putative
     chloroplast nucleoid DNA binding protein; T3B23.12; putative carbonic
     anhydrase; T3B23.13; T3B23.14; copper/zinc superoxide dismutase, 5'
     partial.

ATAC006219  AC006219    82532bp    DNA      PLN      12-MAY-1999
    Arabidopsis thaliana chromosome II BAC T14C8 genomic sequence, complete
     sequence.
    HTG; T14C8.1; T14C8.2; T14C8.3; T14C8.4; T14C8.5; T14C8.6; T14C8.7;
     T14C8.8; T14C8.9; T14C8.10.

ATAC006264  AC006264    93220bp    DNA      PLN      12-MAY-1999
    Arabidopsis thaliana chromosome II BAC F26H11 genomic sequence, complete
     sequence.
    HTG; F26H11.1; putative vsf-1 transcription factor (basic-leucine zipper
     transcription factor family), 5'; putative vsf-1 transcription factor
     (basic-leucine zipper transcription factor family), 5' partial;
     F26H11.2; putative auxin-induced protein; F26H11.3; F26H11.4; F26H11.5;
     putative ER lumen protein retaining receptor; F26H11.6; F26H11.7;
     putative triosephosphate isomerase; F26H11.8; signal sequence receptor,
     alpha subunit (SSR-alpha); F26H11.9; putative XAP-5 protein [Homo
     sapiens]; F26H11.10; putative proline-rich protein; F26H11.11;
     cyclophilin (CYP2); F26H11.12; F26H11.13; putative disease resistance
     response protein; F26H11.14; F26H11.15; F26H11.16; F26H11.17; F26H11.18;
     glycine-rich cell wall structural protein 2 (AtGRP2); F26H11.19;
     putative aromatic amino acid permease; F26H11.20; putative C2-domain
     protein (prosite: PD0C00380); F26H11.21; F26H11.22; putative major
     intrinsic protein (nodulin-26 protein); F26H11.23; F26H11.24; putative
     pol polyprotein; F26H11.25; F26H11.26; F26H11.27; putative cytoskeletal
     protein; F26H11.28; pEARLI 4 protein; F26H11.29; putative pEARLI 4-like
     protein; F26H11.30.

=========== Updated Sequence Features/Annotations  =============

AB003139    AB003139     1695bp    DNA      PLN      15-MAY-1999
    Arabidopsis thaliana transgenic line A DNA, 5'-junction region.
    phosphinothricin acetyltransferase; bar.

AB003140    AB003140     2256bp    DNA      PLN      15-MAY-1999
    Arabidopsis thaliana transgenic line A DNA, 3'-junction region.

AB003141    AB003141     4475bp    DNA      PLN      15-MAY-1999
    Arabidopsis thaliana transgenic line B DNA.

AB003142    AB003142     5984bp    DNA      PLN      15-MAY-1999
    Arabidopsis thaliana transgenic line C DNA.
    hygromycin phosphotransferase; hpt.

AB022891    AB022891     3873bp    DNA      PLN      08-MAY-1999
    Arabidopsis thaliana DNA for glucose-1-phosphate adenylyltransferase,
     complete cds.
    adg2; glucose-1-phosphate adenylyltransferase.

AF013466    AF013466     2675bp    mRNA     PLN      13-MAY-1999
    Arabidopsis thaliana auxin response factor 4 (ARF4) mRNA, complete cds.
    ARF4; auxin response factor 4.

AF013467    AF013467     3832bp    mRNA     PLN      13-MAY-1999
    Arabidopsis thaliana ARF6 (ARF6) mRNA, complete cds.
    ARF6.

AF019927    AF019927     1572bp    mRNA     PLN      14-MAY-1999
    Arabidopsis thaliana GSK3/shaggy-like protein kinase (GSK1) mRNA,
     complete cds.
    GSK1; GSK3/shaggy-like protein kinase.

AF033586    AF033586      709bp    mRNA     PLN      13-MAY-1999
    Arabidopsis thaliana 9G8-like SR protein (SRZ22) mRNA, complete cds.
    SRZ22; 9G8-like SR protein.

AF033587    AF033587      998bp    mRNA     PLN      13-MAY-1999
    Arabidopsis thaliana SRZ21 mRNA, complete cds.
    SRZ21.

AF042195    AF042195     4044bp    mRNA     PLN      13-MAY-1999
    Arabidopsis thaliana auxin response factor 7 (ARF7) mRNA, complete cds.
    ARF7; auxin response factor 7.

AF042196    AF042196     2817bp    mRNA     PLN      13-MAY-1999
    Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete cds.
    ARF8; auxin response factor 8.

AF047834    AF047834     1508bp    mRNA     PLN      14-MAY-1999
    Arabidopsis thaliana 4-hydroxyphenylpyruvate dioxygenase mRNA, complete
     cds.
    4-hydroxyphenylpyruvate dioxygenase.

AF074021    AF074021   103632bp    DNA      PLN      11-MAY-1999
    Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence.
    HTG; F4H6.7; hypothetical protein; F4H6.8; putative transposon protein;
     F4H6.9; putative receptor-like protein kinase; F4H6.10; F4H6.11;
     F4H6.12; putative polyprotein; F4H6.13; 5'-adenylylsulfate reductase;
     F4H6.14; putative symbiosis-related protein; F4H6.15.

AF076243    AF076243    99384bp    DNA      PLN      11-MAY-1999
    Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete
     sequence.
    HTG; T26N6.1; T26N6.2; putative polyprotein; T26N6.3; putative transposon
     protein; T26N6.4; T26N6.5; T26N6.6; putative DNA-binding protein;
     T26N6.7; putative aspartic protease; T26N6.9; pmp22 peroxisomal membrane
     protein; T26N6.8; hypothetical protein; T26N6.10; putative receptor-like
     protein kinase; T26N6.11; T26N6.12; T26N6.13; T26N6.14; T26N6.15;
     T26N6.16.

AF082176    AF082176     2292bp    mRNA     PLN      13-MAY-1999
    Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete cds.
    ARF9; auxin response factor 9.

ATF7K2      AL033545    90933bp    DNA      PLN      10-MAY-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone F7K2 (ESSAII project).
    F7K2_10; hypothetical protein (fragment); F7K2_20; hypothetical protein;
     F7K2_30; F7K2_40; extensin like protein; F7K2_50; extensin-like protein;
     F7K2_60; putative glycine-rich protein; F7K2_70; RCc3-like protein;
     F7K2_80; putative protein; F7K2_90; F7K2_100; F7K2_110; F7K2_120;
     F7K2_130; F7K2_140; F7K2_150; adenine phosphoribosyltransferase (EC
     2.4.2.7)-like protein; F7K2_160; F7K2_170; trehalose-6-phosphate
     phosphatase-like protein; F7K2_180; F7K2_190; F7K2_200; F7K2_210;
     F7K2_220; F7K2_230; F7K2_240; F7K2_250.

ATM4E13     AL022023    80346bp    DNA      PLN      07-MAY-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone M4E13 (ESSAII project).
    M4E13.10; EF-1 alpha-like protein (fragment); M4E13.20; cyclophilin-like
     protein; M4E13.30; actin depolymerizing factor-like protein; M4E13.40;
     subtilisin proteinase-like; M4E13.50; MYB-like protein; M4E13.60;
     L-ascorbate peroxidase; M4E13.70; beta-galactosidase-like protein;
     M4E13.80; Rho1Ps homolog/ Rac-like protein; M4E13.90; protein
     kinase-like; M4E13.100; putative protein; M4E13.110; WD-40 repeat
     protein (MSI3); M4E13.120; M4E13.130; M4E13.135; M4E13.140; catalase;
     M4E13.150; plasma membrane intrinsic protein (SIMIP); M4E13.160;
     M4E13.170; M4E13.180; M4E13.190; hypothetical protein.

ATU88061    U88061      876bp    mRNA     PLN      14-MAY-1999
    Arabidopsis thaliana SNF5 homolog BSH (bsh) mRNA, complete cds.
    bsh; SNF5 homolog BSH.

ATU92460    U92460     7079bp    DNA      PLN      11-MAY-1999
    Arabidopsis thaliana 12-oxophytodienoate reductase OPR1 and
     12-oxophytodienoate reductase OPR2 genes, complete cds.
    12-oxophytodienoate reductase OPR1; 12-oxophytodienoate reductase OPR2.

F10A2       AF147259   123080bp    DNA      PLN      11-MAY-1999
    Arabidopsis thaliana BAC F10A2.
    F10A2.16; F10A2.15; F10A2.14; F10A2.13; F10A2.17; F10A2.10; F10A2.9;
     F10A2.8; F10A2.7; F10A2.4; F10A2.3; F10A2.2; F10A2.1.

F14G16      AF147260    63292bp    DNA      PLN      11-MAY-1999
    Arabidopsis thaliana BAC F14G16.

F21I2       AF147261    94905bp    DNA      PLN      11-MAY-1999
    Arabidopsis thaliana BAC F21I2.

F28D6       AF147262   112629bp    DNA      PLN      11-MAY-1999
    Arabidopsis thaliana BAC F28D6.

T1J24       AF147263   122529bp    DNA      PLN      11-MAY-1999
    Arabidopsis thaliana BAC T1J24.

T23K8       AC007230    53090bp    DNA      PLN      13-MAY-1999
    Arabidopsis thaliana chromosome 1 BAC T23K8 sequence, complete sequence.
    HTG; T23K8.1; T23K8.2; T23K8.3; T23K8.4; T23K8.5; T23K8.6; T23K8.7;
     T23K8.8; T23K8.9; T23K8.10; T23K8.11; T23K8.12; T23K8.13; T23K8.14;
     T23K8.15.

T3E15       AF147264   126087bp    DNA      PLN      11-MAY-1999
    Arabidopsis thaliana BAC T3E15.

T6L9        AF147265    54573bp    DNA      PLN      11-MAY-1999
    Arabidopsis thaliana BAC T6L9.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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