New Arabidopsis DNA 22-May-1999
AtDB Project
arabidopsis-seq at genome.stanford.edu
Sat May 22 11:17:04 EST 1999
====================== New DNA Sequences =======================
AB021857 AB021857 2867bp DNA PLN 20-MAY-1999
Arabidopsis thaliana HY1 gene for plastid heme oxygenase, complete cds.
plastid heme oxygenase; HY1.
AB021858 AB021858 1069bp mRNA PLN 20-MAY-1999
Arabidopsis thaliana HY1 mRNA for plastid heme oxygenase, complete cds.
plastid heme oxygenase; HY1.
AB027151 AB027151 2233bp DNA PLN 18-MAY-1999
Arabidopsis thaliana gene for threonine synthase, complete cds.
threonine synthase.
AB027153 AB027153 1093bp mRNA PLN 18-MAY-1999
Arabidopsis thaliana ATSRPK1 mRNA for SNF1 related protein kinase,
partial cds.
SNF1 related protein kinase; ATSRPK1.
AB027230 AB027230 1461bp DNA PLN 19-MAY-1999
Arabidopsis thaliana gene for misc_feature.
AC007576 AC007576 112231bp DNA HTG 17-MAY-1999
Arabidopsis thaliana chromosome I BAC F7A19 genomic sequence, WORKING
DRAFT SEQUENCE, 5 unordered pieces.
HTG; HTGS_PHASE1.
AC007583 AC007583 107818bp DNA HTG 18-MAY-1999
Arabidopsis thaliana chromosome 1 BAC F24B9 sequence, WORKING DRAFT
SEQUENCE, 3 unordered pieces.
HTG; HTGS_PHASE1.
AC007584 AC007584 100129bp DNA HTG 18-MAY-1999
Arabidopsis thaliana 'MITSUI' P1 'MJB20' genomic sequence near marker
'?', WORKING DRAFT SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC007591 AC007591 140279bp DNA HTG 19-MAY-1999
Arabidopsis thaliana chromosome 1 BAC F9L1 sequence, WORKING DRAFT
SEQUENCE, 2 ordered pieces.
HTG; HTGS_PHASE2.
AC007592 AC007592 90682bp DNA HTG 20-MAY-1999
Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I,
WORKING DRAFT SEQUENCE, 5 unordered pieces.
HTG; HTGS_PHASE1.
AC007627 AC007627 172153bp DNA HTG 21-MAY-1999
Arabidopsis thaliana BAC F15F15, from Chromosome V near 69 cM, WORKING
DRAFT SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC007633 AC007633 106073bp DNA HTG 21-MAY-1999
Arabidopsis thaliana BAC T25P22, from Chromosome IV near 25 cM, WORKING
DRAFT SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC007634 AC007634 130000bp DNA HTG 21-MAY-1999
Arabidopsis thaliana BAC T30A10, from Chromosome IV near 25 cM, WORKING
DRAFT SEQUENCE, 6 unordered pieces.
HTG; HTGS_PHASE1.
AC007635 AC007635 172675bp DNA HTG 21-MAY-1999
Arabidopsis thaliana BAC T32A17, from Chromosome IV at 24.2 cM, WORKING
DRAFT SEQUENCE, 9 unordered pieces.
HTG; HTGS_PHASE1.
AF085354 AF085354 1483bp mRNA PLN 18-MAY-1999
Arabidopsis thaliana shrunken seed protein (SSE1) mRNA, complete cds.
SSE1; shrunken seed protein.
AF116556 AF116556 4831bp mRNA PLN 19-MAY-1999
Arabidopsis thaliana putative transcription factor (HUA2) mRNA, complete
cds.
HUA2; putative transcription factor.
AF121877 AF121877 23665bp DNA PLN 17-MAY-1999
Arabidopsis thaliana cytidine deaminase gene cluster, complete sequence.
desA; DesA; desB; DesB; desC; DesC; desD; DesD; desE; DesE; desF; DesF;
desG; DesG; desH; DesH.
AF121878 AF121878 965bp mRNA PLN 17-MAY-1999
Arabidopsis thaliana cytidine deaminase mRNA, complete cds.
desZ; cytidine deaminase.
AF125987 AF125987 119bp DNA PLN 18-MAY-1999
Arabidopsis thaliana clone MRT7 repetitive DNA.
AF125988 AF125988 119bp DNA PLN 18-MAY-1999
Arabidopsis thaliana clone SY repetitive DNA.
AF125989 AF125989 128bp DNA PLN 18-MAY-1999
Arabidopsis thaliana clone MARYAM repetitive DNA.
AF125990 AF125990 176bp DNA PLN 18-MAY-1999
Arabidopsis thaliana clone HTKT7 repetitive DNA.
AF125991 AF125991 189bp DNA PLN 18-MAY-1999
Arabidopsis thaliana clone YHT7XD repetitive DNA.
AF125992 AF125992 190bp DNA PLN 18-MAY-1999
Arabidopsis thaliana clone KPXD repetitive DNA.
AF132606 AF132606 839bp mRNA PLN 17-MAY-1999
Arabidopsis thaliana transcription factor CRC mRNA, complete cds.
transcription factor CRC.
ATT22B4 AL049876 108598bp DNA PLN 15-MAY-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone T22B4 (ESSA project).
T22B4.10; putative acyl-CoA synthetase; T22B4.20; putative protein;
T22B4.30; putative glucanase; T22B4.40; T22B4.50; T22B4.60; 98b like
protein; T22B4.70; T22B4.80; T22B4.90; COP1 like protein; T22B4.100;
putative translation elongation factor ts; T22B4.110; putative
RNA-directed RNA polymerase; T22B4.120; putative Ap2 domain protein;
T22B4.130; H+-transporting ATPase chain E, vacuolar; T22B4.140; putative
translation initiation factor IF-2; T22B4.150; RPP1-WsA-like disease
resistance protein; T22B4.160; putative disease resistance response
protein; T22B4.170; T22B4.180; T22B4.190.
==================== Updated DNA Sequences =====================
AC006837 AC006837 90495bp DNA HTG 15-MAY-1999
Arabidopsis thaliana 'IGF' BAC 'F23H14' genomic sequence near marker
'mi398', WORKING DRAFT SEQUENCE, 21 unordered pieces.
HTG; HTGS_PHASE1.
AC006932 AC006932 89493bp DNA PLN 20-MAY-1999
Genomic sequence for Arabidopsis thaliana BAC T27G7 from chromosome I,
complete sequence.
HTG.
ATAC007288 AC007288 58690bp DNA PLN 18-MAY-1999
Arabidopsis thaliana chromosome II BAC F10C8 genomic sequence, complete
sequence.
HTG; F10C8.1; F10C8.2; F10C8.3; F10C8.4; putative MuDR MURA transposase;
F10C8.5; F10C8.6; F10C8.7; F10C8.8; F10C8.9; F10C8.10; F10C8.11.
T16B5 AC007354 67673bp DNA PLN 19-MAY-1999
Arabidopsis thaliana chromosome 1 BAC T16B5 sequence, complete sequence.
HTG; T16B5.1; T16B5.2; T16B5.3; T16B5.4; T16B5.5; T16B5.6; T16B5.7;
T16B5.8; T16B5.9; T16B5.10; T16B5.11; T16B5.12; T16B5.13; T16B5.14;
T16B5.15; T16B5.16; T16B5.17.
AC007508 AC007508 101305bp DNA PLN 21-MAY-1999
Genomic sequence for Arabidopsis thaliana BAC F1K23 from chromosome I,
complete sequence.
HTG.
AC007509 AC007509 77521bp DNA HTG 21-MAY-1999
Arabidopsis thaliana 'TAMU' BAC 'T19E12' genomic sequence near marker
'mi398', WORKING DRAFT SEQUENCE, 6 unordered pieces.
HTG; HTGS_PHASE1.
ATAC006922 AC006922 134151bp DNA PLN 21-MAY-1999
Arabidopsis thaliana chromosome II BAC T1J8 genomic sequence, complete
sequence.
HTG; T1J8.1; putative tonoplast intrinsic protein gamma; T1J8.2; T1J8.3;
putative glucan synthase; T1J8.4; tRNA-Thr; T1J8.5; putative xyloglucan
endo-transglycosylase; T1J8.6; putative s-adenolsynmethionine synthase;
T1J8.7; putative transcription factor; T1J8.8; T1J8.9; putative
P-glycoprotein pgp1; T1J8.10; T1J8.11; T1J8.12; T1J8.13; putative
farnesylated protein; T1J8.14; T1J8.15; putative glucosyltransferase;
T1J8.16; T1J8.17; putative sigma factor; T1J8.18; T1J8.19; T1J8.20;
T1J8.21; T1J8.22; putative phenylalanine ammonia lyase; T1J8.23;
putative receptor protein kinase; 3'partial.
ATAC007212 AC007212 57550bp DNA PLN 19-MAY-1999
Arabidopsis thaliana chromosome II BAC F8D23 genomic sequence, complete
sequence.
HTG; F8D23.1; F8D23.2; F8D23.3; putative mitochondrial protein; F8D23.4;
putative phosphatidylinositol/phophatidylcholine transfer protein;
F8D23.5; putative MAP kinase 7; F8D23.6; putative bZIP transcription
factor; F8D23.7; putative peroxidase; F8D23.8; F8D23.9; putative purple
acid phosphatase; F8D23.10; F8D23.11; putative elongation factor beta-1;
F8D23.12.
ATAC007288 AC007288 58690bp DNA PLN 18-MAY-1999
Arabidopsis thaliana chromosome II BAC F10C8 genomic sequence, complete
sequence.
HTG; F10C8.1; F10C8.2; F10C8.3; F10C8.4; putative MuDR MURA transposase;
F10C8.5; F10C8.6; F10C8.7; F10C8.8; F10C8.9; F10C8.10; F10C8.11.
ATAC007443 AC007443 13145bp DNA PLN 19-MAY-1999
Arabidopsis thaliana chromosome II BAC F15L11 genomic sequence, complete
sequence.
HTG; F15L11.1; putative replication protein A1, 3'partial; F15L11.2;
putative chlorophyll A-B binding protein LHCBII; F15L11.3.
=========== Updated Sequence Features/Annotations =============
AC006085 AC006085 105807bp DNA PLN 17-MAY-1999
Arabidopsis thaliana chromosome I BAC F11M15 genomic sequence, complete
sequence.
HTG; F11M15.1; F11M15.2; F11M15.3; F11M15.4; F11M15.5; F11M15.6;
F11M15.7; F11M15.8; F11M15.9; F11M15.10; F11M15.11; F11M15.12; Putative
acyl-CoA:1-acylglycerol-3-phosphate acyltransferase; F11M15.13;
F11M15.14; F11M15.15; F11M15.16; F11M15.17; F11M15.18; F11M15.19;
F11M15.20; F11M15.21; F11M15.22; F11M15.23; F11M15.24; F11M15.25;
F11M15.26.
AC007153 AC007153 103223bp DNA PLN 17-MAY-1999
Arabidopsis thaliana chromosome I BAC F3F20 genomic sequence, complete
sequence.
HTG; F3F20.1; F3F20.2; F3F20.3; F3F20.4; F3F20.5; F3F20.6; Putative
ADP-glucose pyrophosphorylase, small subunit precursor; F3F20.7;
F3F20.8; F3F20.9; F3F20.10; F3F20.11; F3F20.12; F3F20.13; F3F20.14;
F3F20.15; F3F20.16; F3F20.17; F3F20.18; F3F20.19.
AC007260 AC007260 78378bp DNA PLN 17-MAY-1999
Arabidopsis thaliana chromosome I BAC T30F21 genomic sequence, complete
sequence.
HTG; T30F21.1; putative gamma-glutamyl hydrolase; T30F21.2; T30F21.3;
T30F21.4; T30F21.5; T30F21.6; T30F21.7; T30F21.8; T30F21.9;
trehalose-6-phosphate synthase; T30F21.10; T30F21.11; T30F21.12;
T30F21.13; T30F21.14; putative protein kinase; T30F21.15; T30F21.16;
Putative Oxidosqualene Cyclase; T30F21.17; T30F21.18; T30F21.19;
T30F21.20; T30F21.21.
AF069468 AF069468 3004bp DNA PLN 19-MAY-1999
Arabidopsis thaliana sterol-C5-desaturase gene, complete cds.
sterol-C5-desaturase.
ATAC005970 AC005970 121160bp DNA PLN 20-MAY-1999
Arabidopsis thaliana chromosome II BAC T6P5 genomic sequence, complete
sequence.
HTG; T6P5.1; T6P5.2; T6P5.3; putative translation initiation factor
eIF-2B, alpha subunit; T6P5.4; 20S proteasome subunit PAA2; T6P5.5;
putative serine carboxypeptidase; T6P5.6; T6P5.7; T6P5.8; T6P5.9;
T6P5.10; G9a-like protein; T6P5.11; T6P5.12; subtilisin-like protease;
T6P5.13; putative reverse transcriptase; T6P5.14; putative protein
kinase; T6P5.15; T6P5.16; T6P5.17; T6P5.18; T6P5.19; enoyl-ACP reductase
(enr-A); T6P5.20.
ATAC006053 AC006053 100745bp DNA PLN 19-MAY-1999
Arabidopsis thaliana chromosome II BAC F3N11 genomic sequence, complete
sequence.
HTG; F3N11.1; dnaJ-like domain protein, 5' partial; F3N11.2; F3N11.3;
putative selenium-binding protein; F3N11.4; F3N11.5; putative potassium
transport protein; F3N11.6; proton-ATPase-like protein; F3N11.7;
putative proton phosphatase; F3N11.8; putative beta-glucosidase;
F3N11.9; putative transcription elongation factor; F3N11.10; putative
ADR1 protein; F3N11.11; F3N11.12; F3N11.13; F3N11.14; F3N11.15; putative
kinetochore protein; F3N11.16; biotin holocarboxylase synthetase;
F3N11.17; F3N11.18; F3N11.19.
ATAC006592 AC006592 106949bp DNA PLN 20-MAY-1999
Arabidopsis thaliana chromosome II BAC F14M13 genomic sequence, complete
sequence.
HTG; F14M13.1; anthocyanidin-3-glucoside rhamnosyltransferase, 3'
partial; F14M13.2; tRNA-Ala; F14M13.3; F14M13.4; F14M13.5; F14M13.6;
putative MADS box protein; F14M13.7; F14M13.8; F14M13.9; F14M13.10;
putative mitochondrial uncoupling protein; F14M13.11; putative cyclin
delta-2; F14M13.12; putative pyrophosphate--fructose 6-phosphate
1-phosphotransferase; F14M13.13; F14M13.14; F14M13.15; putative GTP
cyclohydrolase; F14M13.16; putative reverse transcriptase; F14M13.17;
homeobox-leucine zipper protein ATHB-6; F14M13.18; putative peroxidase;
F14M13.19; F14M13.20; F14M13.21; putative GTP binding protein;
F14M13.22; tRNA-Ile; F14M13.23; F14M13.24; putative DNAJ protein;
F14M13.25; F14M13.26; F14M13.27; putative cytochrome P450.
ATAC006951 AC006951 99804bp DNA PLN 20-MAY-1999
Arabidopsis thaliana chromosome II BAC T1O3 genomic sequence, complete
sequence.
HTG; T1O3.1; putative reverse transcriptase Tal-1; T1O3.2; putative
proline-rich protein APG; T1O3.3; putative lipid-A-disaccharide
synthase; T1O3.4; putative MAP kinase phosphatase; T1O3.5; putative
3-oxoacyl carrier protein synthase II; T1O3.6; T1O3.7; putative
translation initiation factor EIF-1A; T1O3.8; T1O3.9; T1O3.10; putative
retrotransposon hopscotch polyprotein; T1O3.11; T1O3.12; T1O3.13;
putative pol polyprotein; T1O3.14; putative antisense basic fibroblast
growth factor; T1O3.15; T1O3.16; T1O3.17; putative polygalacturonase;
T1O3.18; T1O3.19; putative indole-3-glycerol phosphate synthase
precursor; T1O3.20; putative 40S ribosomal protein S17; T1O3.21;
T1O3.22; T1O3.23; T1O3.24; putative acyl-CoA synthetase; T1O3.25;
T1O3.26; T1O3.27; T1O3.28; putative transposase.
ATAC007017 AC007017 120938bp DNA PLN 20-MAY-1999
Arabidopsis thaliana chromosome II BAC F11F19 genomic sequence, complete
sequence.
HTG; F11F19.1; putative DNA-binding protein RAV2; F11F19.2; F11F19.3;
putative DNA-binding protein; F11F19.32; F11F19.5; F11F19.6; F11F19.7;
F11F19.8; putative transcription factor E2F5; F11F19.9; F11F19.10;
F11F19.11; putative harpin-induced protein; F11F19.12; F11F19.13;
F11F19.14; F11F19.15; putative homeotic protein BEL1; F11F19.16;
F11F19.17; putative RNA helicase A; F11F19.18; F11F19.19; F11F19.20;
putative calcium-dependent protein kinase; F11F19.21; F11F19.22;
F11F19.23; F11F19.24; F11F19.25; F11F19.26; F11F19.27; F11F19.28;
F11F19.29; putative solute carrier protein; F11F19.30; F11F19.31;
putative serine carboxypeptidase II.
ATF4B14 AL031986 99461bp DNA PLN 19-MAY-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone F4B14 (ESSA project).
F4B14.10; putative protein (fragment); F4B14.20; putative protein;
F4B14.30; F4B14.40; senescence-associated protein sen1; F4B14.50;
putative protein kinase; F4B14.60; F4B14.70; DNA-directed RNA polymerase
(EC 2.7.7.6) II largest chain; F4B14.80; F4B14.90; F4B14.100;
cytoplasmatic aconitate hydratase (citrate hydro-lyase)(aconitase)(EC
4.2.1.3); F4B14.110; F4B14.120; F4B14.130; GTP-binding protein GB2;
F4B14.140; F4B14.150; F4B14.160; F4B14.170; putative bZIP transcription
factor; F4B14.180; F4B14.190; F4B14.200; hypothetical protein;
F4B14.210; F4B14.220; ras-related small GTP-binding protein; F4B14.230;
F4B14.240; putative ascorbate peroxidase; F4B14.250.
ATT1P17 AL049730 114931bp DNA PLN 19-MAY-1999
Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project).
T1P17.10; putative pollen-specific protein; T1P17.20; putative
trehalose-6-phosphate phosphatase (AtTPPA); T1P17.30; putative adenine
phosphoribosyltransferase; T1P17.40; putative protein; T1P17.50;
putative SWH1 protein; T1P17.60; pEARLI 1-like protein; T1P17.70; pEARLI
1; T1P17.80; T1P17.90; T1P17.100; T1P17.110; T1P17.120; AIR1A-like
protein; T1P17.130; hypothetical protein; T1P17.140; putative cell
wall-plasma membrane disconnecting CLCT protein (AIR1A); T1P17.150;
T1P17.160; polyubiquitin-like protein (fragment).
F25C20 AC007296 91566bp DNA PLN 15-MAY-1999
Arabidopsis thaliana chromosome 1 BAC F25C20 sequence, complete sequence.
HTG; F25C20.1; F25C20.2; F25C20.3; F25C20.4; F25C20.5; F25C20.6;
F25C20.7; F25C20.8; F25C20.9; F25C20.10; F25C20.11; F25C20.12;
F25C20.13; F25C20.14; F25C20.15; F25C20.16; F25C20.17; F25C20.18;
F25C20.19; F25C20.20; F25C20.21; tRNA-OTHER; F25C20.22; F25C20.23;
F25C20.24; F25C20.25.
F3F19 AC007357 99758bp DNA PLN 18-MAY-1999
Arabidopsis thaliana chromosome 1 BAC F3F19 sequence, complete sequence.
HTG; F3F19.1; F3F19.2; F3F19.3; tRNA-OTHER; F3F19.4; F3F19.5; F3F19.6;
F3F19.7; F3F19.8; F3F19.9; F3F19.10; F3F19.11; F3F19.12; F3F19.13;
F3F19.14; F3F19.15; F3F19.16; F3F19.17; F3F19.18; F3F19.19; F3F19.20;
F3F19.21; F3F19.22; F3F19.23; F3F19.24; F3F19.25; F3F19.26; F3F19.27.
T16B5 AC007354 67673bp DNA PLN 19-MAY-1999
Arabidopsis thaliana chromosome 1 BAC T16B5 sequence, complete sequence.
HTG; T16B5.1; T16B5.2; T16B5.3; T16B5.4; T16B5.5; T16B5.6; T16B5.7;
T16B5.8; T16B5.9; T16B5.10; T16B5.11; T16B5.12; T16B5.13; T16B5.14;
T16B5.15; T16B5.16; T16B5.17.
T8K14 AC007202 78574bp DNA PLN 15-MAY-1999
Arabidopsis thaliana chromosome 1 BAC T8K14 sequence, complete sequence.
HTG; T8K14.1; T8K14.2; T8K14.3; T8K14.4; T8K14.5; T8K14.6; T8K14.7;
T8K14.8; T8K14.9; T8K14.10; T8K14.11; T8K14.12; T8K14.13; T8K14.14;
T8K14.15; T8K14.16; T8K14.17; T8K14.18; T8K14.19; T8K14.20; T8K14.21.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
More information about the Arab-gen
mailing list