New Arabidopsis DNA 22-May-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat May 22 11:17:04 EST 1999


====================== New DNA Sequences =======================

AB021857    AB021857     2867bp    DNA      PLN      20-MAY-1999
    Arabidopsis thaliana HY1 gene for plastid heme oxygenase, complete cds.
    plastid heme oxygenase; HY1.

AB021858    AB021858     1069bp    mRNA     PLN      20-MAY-1999
    Arabidopsis thaliana HY1 mRNA for plastid heme oxygenase, complete cds.
    plastid heme oxygenase; HY1.

AB027151    AB027151     2233bp    DNA      PLN      18-MAY-1999
    Arabidopsis thaliana gene for threonine synthase, complete cds.
    threonine synthase.

AB027153    AB027153     1093bp    mRNA     PLN      18-MAY-1999
    Arabidopsis thaliana ATSRPK1 mRNA for SNF1 related protein kinase,
     partial cds.
    SNF1 related protein kinase; ATSRPK1.

AB027230    AB027230     1461bp    DNA      PLN      19-MAY-1999
    Arabidopsis thaliana gene for misc_feature.

AC007576    AC007576   112231bp    DNA      HTG      17-MAY-1999
    Arabidopsis thaliana chromosome I BAC F7A19 genomic sequence, WORKING
     DRAFT SEQUENCE, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC007583    AC007583   107818bp    DNA      HTG      18-MAY-1999
    Arabidopsis thaliana chromosome 1 BAC F24B9 sequence, WORKING DRAFT
     SEQUENCE, 3 unordered pieces.
    HTG; HTGS_PHASE1.

AC007584    AC007584   100129bp    DNA      HTG      18-MAY-1999
    Arabidopsis thaliana 'MITSUI' P1 'MJB20' genomic sequence near marker
     '?', WORKING DRAFT SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC007591    AC007591   140279bp    DNA      HTG      19-MAY-1999
    Arabidopsis thaliana chromosome 1 BAC F9L1 sequence, WORKING DRAFT
     SEQUENCE, 2 ordered pieces.
    HTG; HTGS_PHASE2.

AC007592    AC007592    90682bp    DNA      HTG      20-MAY-1999
    Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I,
     WORKING DRAFT SEQUENCE, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AC007627    AC007627   172153bp    DNA      HTG      21-MAY-1999
    Arabidopsis thaliana BAC F15F15, from Chromosome V near 69 cM, WORKING
     DRAFT SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC007633    AC007633   106073bp    DNA      HTG      21-MAY-1999
    Arabidopsis thaliana BAC T25P22, from Chromosome IV near 25 cM, WORKING
     DRAFT SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC007634    AC007634   130000bp    DNA      HTG      21-MAY-1999
    Arabidopsis thaliana BAC T30A10, from Chromosome IV near 25 cM, WORKING
     DRAFT SEQUENCE, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC007635    AC007635   172675bp    DNA      HTG      21-MAY-1999
    Arabidopsis thaliana BAC T32A17, from Chromosome IV at 24.2 cM, WORKING
     DRAFT SEQUENCE, 9 unordered pieces.
    HTG; HTGS_PHASE1.

AF085354    AF085354     1483bp    mRNA     PLN      18-MAY-1999
    Arabidopsis thaliana shrunken seed protein (SSE1) mRNA, complete cds.
    SSE1; shrunken seed protein.

AF116556    AF116556     4831bp    mRNA     PLN      19-MAY-1999
    Arabidopsis thaliana putative transcription factor (HUA2) mRNA, complete
     cds.
    HUA2; putative transcription factor.

AF121877    AF121877    23665bp    DNA      PLN      17-MAY-1999
    Arabidopsis thaliana cytidine deaminase gene cluster, complete sequence.
    desA; DesA; desB; DesB; desC; DesC; desD; DesD; desE; DesE; desF; DesF;
     desG; DesG; desH; DesH.

AF121878    AF121878      965bp    mRNA     PLN      17-MAY-1999
    Arabidopsis thaliana cytidine deaminase mRNA, complete cds.
    desZ; cytidine deaminase.

AF125987    AF125987      119bp    DNA      PLN      18-MAY-1999
    Arabidopsis thaliana clone MRT7 repetitive DNA.

AF125988    AF125988      119bp    DNA      PLN      18-MAY-1999
    Arabidopsis thaliana clone SY repetitive DNA.

AF125989    AF125989      128bp    DNA      PLN      18-MAY-1999
    Arabidopsis thaliana clone MARYAM repetitive DNA.

AF125990    AF125990      176bp    DNA      PLN      18-MAY-1999
    Arabidopsis thaliana clone HTKT7 repetitive DNA.

AF125991    AF125991      189bp    DNA      PLN      18-MAY-1999
    Arabidopsis thaliana clone YHT7XD repetitive DNA.

AF125992    AF125992      190bp    DNA      PLN      18-MAY-1999
    Arabidopsis thaliana clone KPXD repetitive DNA.

AF132606    AF132606      839bp    mRNA     PLN      17-MAY-1999
    Arabidopsis thaliana transcription factor CRC mRNA, complete cds.
    transcription factor CRC.

ATT22B4     AL049876   108598bp    DNA      PLN      15-MAY-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone T22B4 (ESSA project).
    T22B4.10; putative acyl-CoA synthetase; T22B4.20; putative protein;
     T22B4.30; putative glucanase; T22B4.40; T22B4.50; T22B4.60; 98b like
     protein; T22B4.70; T22B4.80; T22B4.90; COP1 like protein; T22B4.100;
     putative translation elongation factor ts; T22B4.110; putative
     RNA-directed RNA polymerase; T22B4.120; putative Ap2 domain protein;
     T22B4.130; H+-transporting ATPase chain E, vacuolar; T22B4.140; putative
     translation initiation factor IF-2; T22B4.150; RPP1-WsA-like disease
     resistance protein; T22B4.160; putative disease resistance response
     protein; T22B4.170; T22B4.180; T22B4.190.

==================== Updated DNA Sequences =====================

AC006837    AC006837    90495bp    DNA      HTG      15-MAY-1999
    Arabidopsis thaliana 'IGF' BAC 'F23H14' genomic sequence near marker
     'mi398', WORKING DRAFT SEQUENCE, 21 unordered pieces.
    HTG; HTGS_PHASE1.

AC006932    AC006932    89493bp    DNA      PLN      20-MAY-1999
    Genomic sequence for Arabidopsis thaliana BAC T27G7 from chromosome I,
     complete sequence.
    HTG.

ATAC007288  AC007288    58690bp    DNA      PLN      18-MAY-1999
    Arabidopsis thaliana chromosome II BAC F10C8 genomic sequence, complete
     sequence.
    HTG; F10C8.1; F10C8.2; F10C8.3; F10C8.4; putative MuDR MURA transposase;
     F10C8.5; F10C8.6; F10C8.7; F10C8.8; F10C8.9; F10C8.10; F10C8.11.

T16B5       AC007354    67673bp    DNA      PLN      19-MAY-1999
    Arabidopsis thaliana chromosome 1 BAC T16B5 sequence, complete sequence.
    HTG; T16B5.1; T16B5.2; T16B5.3; T16B5.4; T16B5.5; T16B5.6; T16B5.7;
     T16B5.8; T16B5.9; T16B5.10; T16B5.11; T16B5.12; T16B5.13; T16B5.14;
     T16B5.15; T16B5.16; T16B5.17.

AC007508    AC007508   101305bp    DNA      PLN      21-MAY-1999
    Genomic sequence for Arabidopsis thaliana BAC F1K23 from chromosome I,
     complete sequence.
    HTG.

AC007509    AC007509    77521bp    DNA      HTG      21-MAY-1999
    Arabidopsis thaliana 'TAMU' BAC 'T19E12' genomic sequence near marker
     'mi398', WORKING DRAFT SEQUENCE, 6 unordered pieces.
    HTG; HTGS_PHASE1.

ATAC006922  AC006922   134151bp    DNA      PLN      21-MAY-1999
    Arabidopsis thaliana chromosome II BAC T1J8 genomic sequence, complete
     sequence.
    HTG; T1J8.1; putative tonoplast intrinsic protein gamma; T1J8.2; T1J8.3;
     putative glucan synthase; T1J8.4; tRNA-Thr; T1J8.5; putative xyloglucan
     endo-transglycosylase; T1J8.6; putative s-adenolsynmethionine synthase;
     T1J8.7; putative transcription factor; T1J8.8; T1J8.9; putative
     P-glycoprotein pgp1; T1J8.10; T1J8.11; T1J8.12; T1J8.13; putative
     farnesylated protein; T1J8.14; T1J8.15; putative glucosyltransferase;
     T1J8.16; T1J8.17; putative sigma factor; T1J8.18; T1J8.19; T1J8.20;
     T1J8.21; T1J8.22; putative phenylalanine ammonia lyase; T1J8.23;
     putative receptor protein kinase; 3'partial.

ATAC007212  AC007212    57550bp    DNA      PLN      19-MAY-1999
    Arabidopsis thaliana chromosome II BAC F8D23 genomic sequence, complete
     sequence.
    HTG; F8D23.1; F8D23.2; F8D23.3; putative mitochondrial protein; F8D23.4;
     putative phosphatidylinositol/phophatidylcholine transfer protein;
     F8D23.5; putative MAP kinase 7; F8D23.6; putative bZIP transcription
     factor; F8D23.7; putative peroxidase; F8D23.8; F8D23.9; putative purple
     acid phosphatase; F8D23.10; F8D23.11; putative elongation factor beta-1;
     F8D23.12.

ATAC007288  AC007288    58690bp    DNA      PLN      18-MAY-1999
    Arabidopsis thaliana chromosome II BAC F10C8 genomic sequence, complete
     sequence.
    HTG; F10C8.1; F10C8.2; F10C8.3; F10C8.4; putative MuDR MURA transposase;
     F10C8.5; F10C8.6; F10C8.7; F10C8.8; F10C8.9; F10C8.10; F10C8.11.

ATAC007443  AC007443    13145bp    DNA      PLN      19-MAY-1999
    Arabidopsis thaliana chromosome II BAC F15L11 genomic sequence, complete
     sequence.
    HTG; F15L11.1; putative replication protein A1, 3'partial; F15L11.2;
     putative chlorophyll A-B binding protein LHCBII; F15L11.3.

=========== Updated Sequence Features/Annotations  =============

AC006085    AC006085   105807bp    DNA      PLN      17-MAY-1999
    Arabidopsis thaliana chromosome I BAC F11M15 genomic sequence, complete
     sequence.
    HTG; F11M15.1; F11M15.2; F11M15.3; F11M15.4; F11M15.5; F11M15.6;
     F11M15.7; F11M15.8; F11M15.9; F11M15.10; F11M15.11; F11M15.12; Putative
     acyl-CoA:1-acylglycerol-3-phosphate acyltransferase; F11M15.13;
     F11M15.14; F11M15.15; F11M15.16; F11M15.17; F11M15.18; F11M15.19;
     F11M15.20; F11M15.21; F11M15.22; F11M15.23; F11M15.24; F11M15.25;
     F11M15.26.

AC007153    AC007153   103223bp    DNA      PLN      17-MAY-1999
    Arabidopsis thaliana chromosome I BAC F3F20 genomic sequence, complete
     sequence.
    HTG; F3F20.1; F3F20.2; F3F20.3; F3F20.4; F3F20.5; F3F20.6; Putative
     ADP-glucose pyrophosphorylase, small subunit precursor; F3F20.7;
     F3F20.8; F3F20.9; F3F20.10; F3F20.11; F3F20.12; F3F20.13; F3F20.14;
     F3F20.15; F3F20.16; F3F20.17; F3F20.18; F3F20.19.

AC007260    AC007260    78378bp    DNA      PLN      17-MAY-1999
    Arabidopsis thaliana chromosome I BAC T30F21 genomic sequence, complete
     sequence.
    HTG; T30F21.1; putative gamma-glutamyl hydrolase; T30F21.2; T30F21.3;
     T30F21.4; T30F21.5; T30F21.6; T30F21.7; T30F21.8; T30F21.9;
     trehalose-6-phosphate synthase; T30F21.10; T30F21.11; T30F21.12;
     T30F21.13; T30F21.14; putative protein kinase; T30F21.15; T30F21.16;
     Putative Oxidosqualene Cyclase; T30F21.17; T30F21.18; T30F21.19;
     T30F21.20; T30F21.21.

AF069468    AF069468     3004bp    DNA      PLN      19-MAY-1999
    Arabidopsis thaliana sterol-C5-desaturase gene, complete cds.
    sterol-C5-desaturase.

ATAC005970  AC005970   121160bp    DNA      PLN      20-MAY-1999
    Arabidopsis thaliana chromosome II BAC T6P5 genomic sequence, complete
     sequence.
    HTG; T6P5.1; T6P5.2; T6P5.3; putative translation initiation factor
     eIF-2B, alpha subunit; T6P5.4; 20S proteasome subunit PAA2; T6P5.5;
     putative serine carboxypeptidase; T6P5.6; T6P5.7; T6P5.8; T6P5.9;
     T6P5.10; G9a-like protein; T6P5.11; T6P5.12; subtilisin-like protease;
     T6P5.13; putative reverse transcriptase; T6P5.14; putative protein
     kinase; T6P5.15; T6P5.16; T6P5.17; T6P5.18; T6P5.19; enoyl-ACP reductase
     (enr-A); T6P5.20.

ATAC006053  AC006053   100745bp    DNA      PLN      19-MAY-1999
    Arabidopsis thaliana chromosome II BAC F3N11 genomic sequence, complete
     sequence.
    HTG; F3N11.1; dnaJ-like domain protein, 5' partial; F3N11.2; F3N11.3;
     putative selenium-binding protein; F3N11.4; F3N11.5; putative potassium
     transport protein; F3N11.6; proton-ATPase-like protein; F3N11.7;
     putative proton phosphatase; F3N11.8; putative beta-glucosidase;
     F3N11.9; putative transcription elongation factor; F3N11.10; putative
     ADR1 protein; F3N11.11; F3N11.12; F3N11.13; F3N11.14; F3N11.15; putative
     kinetochore protein; F3N11.16; biotin holocarboxylase synthetase;
     F3N11.17; F3N11.18; F3N11.19.

ATAC006592  AC006592   106949bp    DNA      PLN      20-MAY-1999
    Arabidopsis thaliana chromosome II BAC F14M13 genomic sequence, complete
     sequence.
    HTG; F14M13.1; anthocyanidin-3-glucoside rhamnosyltransferase, 3'
     partial; F14M13.2; tRNA-Ala; F14M13.3; F14M13.4; F14M13.5; F14M13.6;
     putative MADS box protein; F14M13.7; F14M13.8; F14M13.9; F14M13.10;
     putative mitochondrial uncoupling protein; F14M13.11; putative cyclin
     delta-2; F14M13.12; putative pyrophosphate--fructose 6-phosphate
     1-phosphotransferase; F14M13.13; F14M13.14; F14M13.15; putative GTP
     cyclohydrolase; F14M13.16; putative reverse transcriptase; F14M13.17;
     homeobox-leucine zipper protein ATHB-6; F14M13.18; putative peroxidase;
     F14M13.19; F14M13.20; F14M13.21; putative GTP binding protein;
     F14M13.22; tRNA-Ile; F14M13.23; F14M13.24; putative DNAJ protein;
     F14M13.25; F14M13.26; F14M13.27; putative cytochrome P450.

ATAC006951  AC006951    99804bp    DNA      PLN      20-MAY-1999
    Arabidopsis thaliana chromosome II BAC T1O3 genomic sequence, complete
     sequence.
    HTG; T1O3.1; putative reverse transcriptase Tal-1; T1O3.2; putative
     proline-rich protein APG; T1O3.3; putative lipid-A-disaccharide
     synthase; T1O3.4; putative MAP kinase phosphatase; T1O3.5; putative
     3-oxoacyl carrier protein synthase II; T1O3.6; T1O3.7; putative
     translation initiation factor EIF-1A; T1O3.8; T1O3.9; T1O3.10; putative
     retrotransposon hopscotch polyprotein; T1O3.11; T1O3.12; T1O3.13;
     putative pol polyprotein; T1O3.14; putative antisense basic fibroblast
     growth factor; T1O3.15; T1O3.16; T1O3.17; putative polygalacturonase;
     T1O3.18; T1O3.19; putative indole-3-glycerol phosphate synthase
     precursor; T1O3.20; putative 40S ribosomal protein S17; T1O3.21;
     T1O3.22; T1O3.23; T1O3.24; putative acyl-CoA synthetase; T1O3.25;
     T1O3.26; T1O3.27; T1O3.28; putative transposase.

ATAC007017  AC007017   120938bp    DNA      PLN      20-MAY-1999
    Arabidopsis thaliana chromosome II BAC F11F19 genomic sequence, complete
     sequence.
    HTG; F11F19.1; putative DNA-binding protein RAV2; F11F19.2; F11F19.3;
     putative DNA-binding protein; F11F19.32; F11F19.5; F11F19.6; F11F19.7;
     F11F19.8; putative transcription factor E2F5; F11F19.9; F11F19.10;
     F11F19.11; putative harpin-induced protein; F11F19.12; F11F19.13;
     F11F19.14; F11F19.15; putative homeotic protein BEL1; F11F19.16;
     F11F19.17; putative RNA helicase A; F11F19.18; F11F19.19; F11F19.20;
     putative calcium-dependent protein kinase; F11F19.21; F11F19.22;
     F11F19.23; F11F19.24; F11F19.25; F11F19.26; F11F19.27; F11F19.28;
     F11F19.29; putative solute carrier protein; F11F19.30; F11F19.31;
     putative serine carboxypeptidase II.

ATF4B14     AL031986    99461bp    DNA      PLN      19-MAY-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone F4B14 (ESSA project).
    F4B14.10; putative protein (fragment); F4B14.20; putative protein;
     F4B14.30; F4B14.40; senescence-associated protein sen1; F4B14.50;
     putative protein kinase; F4B14.60; F4B14.70; DNA-directed RNA polymerase
     (EC 2.7.7.6) II largest chain; F4B14.80; F4B14.90; F4B14.100;
     cytoplasmatic aconitate hydratase (citrate hydro-lyase)(aconitase)(EC
     4.2.1.3); F4B14.110; F4B14.120; F4B14.130; GTP-binding protein GB2;
     F4B14.140; F4B14.150; F4B14.160; F4B14.170; putative bZIP transcription
     factor; F4B14.180; F4B14.190; F4B14.200; hypothetical protein;
     F4B14.210; F4B14.220; ras-related small GTP-binding protein; F4B14.230;
     F4B14.240; putative ascorbate peroxidase; F4B14.250.

ATT1P17     AL049730   114931bp    DNA      PLN      19-MAY-1999
    Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project).
    T1P17.10; putative pollen-specific protein; T1P17.20; putative
     trehalose-6-phosphate phosphatase (AtTPPA); T1P17.30; putative adenine
     phosphoribosyltransferase; T1P17.40; putative protein; T1P17.50;
     putative SWH1 protein; T1P17.60; pEARLI 1-like protein; T1P17.70; pEARLI
     1; T1P17.80; T1P17.90; T1P17.100; T1P17.110; T1P17.120; AIR1A-like
     protein; T1P17.130; hypothetical protein; T1P17.140; putative cell
     wall-plasma membrane disconnecting CLCT protein (AIR1A); T1P17.150;
     T1P17.160; polyubiquitin-like protein (fragment).

F25C20      AC007296    91566bp    DNA      PLN      15-MAY-1999
    Arabidopsis thaliana chromosome 1 BAC F25C20 sequence, complete sequence.
    HTG; F25C20.1; F25C20.2; F25C20.3; F25C20.4; F25C20.5; F25C20.6;
     F25C20.7; F25C20.8; F25C20.9; F25C20.10; F25C20.11; F25C20.12;
     F25C20.13; F25C20.14; F25C20.15; F25C20.16; F25C20.17; F25C20.18;
     F25C20.19; F25C20.20; F25C20.21; tRNA-OTHER; F25C20.22; F25C20.23;
     F25C20.24; F25C20.25.

F3F19       AC007357    99758bp    DNA      PLN      18-MAY-1999
    Arabidopsis thaliana chromosome 1 BAC F3F19 sequence, complete sequence.
    HTG; F3F19.1; F3F19.2; F3F19.3; tRNA-OTHER; F3F19.4; F3F19.5; F3F19.6;
     F3F19.7; F3F19.8; F3F19.9; F3F19.10; F3F19.11; F3F19.12; F3F19.13;
     F3F19.14; F3F19.15; F3F19.16; F3F19.17; F3F19.18; F3F19.19; F3F19.20;
     F3F19.21; F3F19.22; F3F19.23; F3F19.24; F3F19.25; F3F19.26; F3F19.27.

T16B5       AC007354    67673bp    DNA      PLN      19-MAY-1999
    Arabidopsis thaliana chromosome 1 BAC T16B5 sequence, complete sequence.
    HTG; T16B5.1; T16B5.2; T16B5.3; T16B5.4; T16B5.5; T16B5.6; T16B5.7;
     T16B5.8; T16B5.9; T16B5.10; T16B5.11; T16B5.12; T16B5.13; T16B5.14;
     T16B5.15; T16B5.16; T16B5.17.

T8K14       AC007202    78574bp    DNA      PLN      15-MAY-1999
    Arabidopsis thaliana chromosome 1 BAC T8K14 sequence, complete sequence.
    HTG; T8K14.1; T8K14.2; T8K14.3; T8K14.4; T8K14.5; T8K14.6; T8K14.7;
     T8K14.8; T8K14.9; T8K14.10; T8K14.11; T8K14.12; T8K14.13; T8K14.14;
     T8K14.15; T8K14.16; T8K14.17; T8K14.18; T8K14.19; T8K14.20; T8K14.21.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




More information about the Arab-gen mailing list