New Arabidopsis DNA 29-May-1999

AtDB Project arabidopsis-seq at genome.stanford.edu
Sat May 29 14:18:17 EST 1999


====================== New DNA Sequences =======================

AB027228    AB027228     1281bp    mRNA     PLN      26-MAY-1999
    Arabidopsis thaliana mRNA for FAS1, partial cds.
    FAS1.

AB027229    AB027229     2445bp    DNA      PLN      26-MAY-1999
    Arabidopsis thaliana gene for FAS1, partial cds.
    FAS1.

AB027458    AB027458     2167bp    mRNA     PLN      28-MAY-1999
    Arabidopsis thaliana ACE (ADHESION OF CALYX EDGES) mRNA, complete cds.
    ACE.

AB027504    AB027504      864bp    mRNA     PLN      28-MAY-1999
    Arabidopsis thaliana FT (FLOWERING LOCUS T) mRNA, complete cds.
    FT.

AB027505    AB027505      780bp    mRNA     PLN      28-MAY-1999
    Arabidopsis thaliana FT (FLOWERING LOCUS T) mRNA, complete cds, spliced
     variant.
    FT.

AB027506    AB027506      799bp    mRNA     PLN      28-MAY-1999
    Arabidopsis thaliana TSF (TWIN SISTER OF FT) mRNA, complete cds.
    TSF.

AB027507    AB027507     2928bp    DNA      PLN      28-MAY-1999
    Arabidopsis thaliana ACE (ADHESION OF CALYX EDGES) gene, complete cds.
    ACE.

AC007651    AC007651   114955bp    DNA      HTG      26-MAY-1999
    Arabidopsis thaliana chromosome I BAC F20D23 genomic sequence, WORKING
     DRAFT SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC007654    AC007654    87605bp    DNA      HTG      27-MAY-1999
    Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I,
     WORKING DRAFT SEQUENCE, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC007658    AC007658    19304bp    DNA      PLN      27-MAY-1999
    Arabidopsis thaliana chromosome II BAC F27I1 genomic sequence, complete
     sequence.
    HTG; F27I1.1; putative ABC1 protein; F27I1.2; putative chlorophyll a/b
     binding protein; F27I1.3; thioredoxin-like protein; F27I1.5; putative
     serine/threonine protein kinase, 5' partial.

AC007659    AC007659    89603bp    DNA      PLN      27-MAY-1999
    Arabidopsis thaliana chromosome II BAC T14P1 genomic sequence, complete
     sequence.
    HTG; T14P1.1; T14P1.2; putative symbiosis-related protein; T14P1.3;
     T14P1.4; putative phosphatidate cytidylyltransferase; T14P1.5; T14P1.6;
     T14P1.7; T14P1.8; T14P1.9; putative transcription factor; T14P1.10;
     T14P1.11; preg-like protein; T14P1.12; putative transport protein SEC61
     beta-subunit; T14P1.13; T14P1.14; putative GATA-binding transcription
     factor; T14P1.15; putative metalloproteinase; T14P1.16; putative
     mitochondrial elongation factor G; T14P1.18; tRNA-Ala; T14P1.17;
     T14P1.19; T14P1.20; T14P1.21; T14P1.22; T14P1.23; T14P1.24; T14P1.25;
     T14P1.26; putative Tiny protein.

AC007660    AC007660    75198bp    DNA      PLN      27-MAY-1999
    Arabidopsis thaliana chromosome II BAC T7D17 genomic sequence, complete
     sequence.
    HTG; T7D17.1; T7D17.2; T7D17.3; thioredoxin-like protein; T7D17.4;
     putative 1-phosphatidylinositol-4,5-biphosphate phosphodiesterase;
     T7D17.5; putative serine/threonine protein kinase; T7D17.6; T7D17.7;
     T7D17.8; T7D17.9; T7D17.10; T7D17.11; T7D17.12; putative RNA helicase;
     T7D17.13; T7D17.14; putative reverse transcriptase; T7D17.15; putative
     response regulator protein; T7D17.16; T7D17.17; T7D17.18; T7D17.19.

AC007661    AC007661   128150bp    DNA      PLN      27-MAY-1999
    Arabidopsis thaliana chromosome II BAC T8P21 genomic sequence, complete
     sequence.
    HTG; T8P21.1; putative diphenol oxidase; T8P21.2; T8P21.3; T8P21.4;
     steroid reducatase; T8P21.5; putative alpha-carboxyltransferase;
     T8P21.6; tRNA-Gly; T8P21.7; T8P21.8; T8P21.9; T8P21.10; T8P21.11;
     putative growth regulator protein; T8P21.12; T8P21.13; T8P21.14;
     T8P21.15; T8P21.16; T8P21.17; T8P21.18; T8P21.19; putative peptide
     transporter protein; T8P21.20; putative mitochondrial carrier family
     protein; T8P21.21; T8P21.22; T8P21.23; T8P21.24; T8P21.25; putative
     serine/threonine protein kinase; T8P21.26; T8P21.27; T8P21.28; T8P21.29;
     putative peptidase; T8P21.30; putative alcohol dehydrogenase; T8P21.31;
     T8P21.32; T8P21.33; T8P21.34; T8P21.35; T8P21.36; putative zinc finger
     protein; T8P21.37.

AC007662    AC007662   102249bp    DNA      PLN      27-MAY-1999
    Arabidopsis thaliana chromosome II BAC F9A16 genomic sequence, complete
     sequence.
    HTG; F9A16.16; putative replication protein A1; F9A16.1; putative
     helicase; F9A16.2; F9A16.3; F9A16.4; F9A16.5; F9A16.6; F9A16.7; putative
     plasma membrane ATPase; F9A16.8; putative pol protein with Zn finger
     CCHC type domain; F9A16.9; F9A16.10; F9A16.11; F9A16.12; F9A16.13;
     putative MuDR transposase; F9A16.14; putative Athila retrotransposon
     ORF1 protein; F9A16.15.

AF088917    AF088917     3081bp    mRNA     PLN      25-MAY-1999
    Arabidopsis thaliana cellulose synthase catalytic subunit (IRX3) mRNA,
     complete cds.
    IRX3; cellulose synthase catalytic subunit.

AF139188    AF139188     1013bp    mRNA     PLN      27-MAY-1999
    Arabidopsis thaliana HCF106 mRNA, complete cds; nuclear gene for
     chloroplast product.
    HCF106.

AF141659    AF141659      722bp    mRNA     PLN      24-MAY-1999
    Arabidopsis thaliana AtHVA22a mRNA, complete cds.
    AtHVA22a.

AF141660    AF141660      693bp    mRNA     PLN      24-MAY-1999
    Arabidopsis thaliana AtHVA22b mRNA, complete cds.
    AtHVA22b.

AF141661    AF141661      788bp    mRNA     PLN      24-MAY-1999
    Arabidopsis thaliana AtHVA22c mRNA, complete cds.
    AtHVA22c.

AF141662    AF141662      788bp    mRNA     PLN      24-MAY-1999
    Arabidopsis thaliana AtHVA22d mRNA, complete cds.
    AtHVA22d.

AF141853    AF141853     3467bp    DNA      PLN      23-MAY-1999
    Arabidopsis thaliana mevalonate kinase gene, complete cds.
    mevalonate kinase.

AF141977    AF141977     2384bp    DNA      PLN      24-MAY-1999
    Arabidopsis thaliana AtHVA22a gene, complete cds.
    AtHVA22a.

AF141978    AF141978     2199bp    DNA      PLN      24-MAY-1999
    Arabidopsis thaliana AtHVA22c gene, complete cds.
    AtHVA22c.

AF141979    AF141979     2580bp    DNA      PLN      24-MAY-1999
    Arabidopsis thaliana AtHVA22d gene, complete cds.
    AtHVA22d.

AF141980    AF141980     2580bp    DNA      PLN      24-MAY-1999
    Arabidopsis thaliana AtHVA22b gene, complete cds.
    AtHVA22b.

ATF22O6     AL050300    93443bp    DNA      PLN      21-MAY-1999
    Arabidopsis thaliana DNA chromosome 3, BAC clone F22O6.
    F22O6.10; putative protein (fragment); F22O6.20; beta-fructofuranosidase;
     F22O6.30; ubiquitin / ribosomal protein CEP52; F22O6.40; putative
     ribosomal protein S14; F22O6.50; putative protein; F22O6.60; F22O6.70;
     hypothetical protein; F22O6.80; F22O6.90; F22O6.100; F22O6.110;
     F22O6.120; F22O6.130; F22O6.140; F22O6.150; F22O6.160; F22O6.170;
     F22O6.180; F22O6.190; F22O6.200; outer envelope membrane protein like
     protein; F22O6.210; F22O6.220; F22O6.230; F22O6.240; RNA-binding protein
     cp33 precursor; F22O6.250.

ATF6E21     AL049914    38340bp    DNA      HTG      20-MAY-1999
    Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone ATF6E21
     (ESSAII project), WORKING DRAFT SEQUENCE.
    HTG; HTGS_PHASE1.

ATH012278   AJ012278     1001bp    mRNA     PLN      24-MAY-1999
    Arabidopsis thaliana mRNA for ATP-dependent Clp protease subunit (clpP).
    ATP-dependent Clp protease; clpP gene; clpP; ATP-dependent Clp protease
     subunit ClpP.

ATH012406   AJ012406     1302bp    mRNA     PLN      26-MAY-1999
    Arabidopsis thaliana mRNA for phosphoribosyl diphosphate synthase isozyme
     3.
    isozyme 3; phosphoribosyl diphosphate synthase; PRS3 gene; prs3.

ATH012407   AJ012407     1283bp    mRNA     PLN      26-MAY-1999
    Arabidopsis thaliana mRNA for phosphoribosyl diphosphate synthase isozyme
     4.
    isozyme 4; phosphoribosyl diphosphate synthase; prs4 gene; prs4.

ATH133753   AJ133753      907bp    mRNA     PLN      20-MAY-1999
    Arabidopsis thaliana mRNA for peptide methionine sulfoxide reductase.
    msr gene; peptide methionine sulfoxide reductase; msr.

ATH133754   AJ133754     2650bp    DNA      PLN      20-MAY-1999
    Arabidopsis thaliana gene for peptide methionine sulfoxide reductase.
    msr gene; peptide methionine sulfoxide reductase; msr; msn.

ATH238802   AJ238802     2471bp    mRNA     PLN      26-MAY-1999
    Arabidopsis thaliana mRNA for putative MAP kinase (clones 179D10T7,
     G8H8T7).
    MAP kinase.

ATH238803   AJ238803      695bp    mRNA     PLN      26-MAY-1999
    Arabidopsis thaliana mRNA for hypothetical protein (clone E5G3T7).
    hypothetical protein.

ATH238804   AJ238804      614bp    mRNA     PLN      26-MAY-1999
    Arabidopsis thaliana mRNA for non-specific lipid transfer protein (clone
     OAO201).
    non-specific lipid transfer protein.

ATH238805   AJ238805      756bp    mRNA     PLN      26-MAY-1999
    Arabidopsis thaliana mRNA for hypothetical protein (clone 83G12T7).
    hypothetical protein.

ATH242588   AJ242588     1242bp    mRNA     PLN      21-MAY-1999
    Arabidopsis thaliana mRNA for partial 1-deoxy-d-xylulose-5-phosphate
     reductoisomerase (dxr gene).
    1-deoxy-d-xylulose-5-phosphate reductoisomerase; dxr gene; dxr.

ATM12G13    AL049916    90570bp    DNA      HTG      20-MAY-1999
    Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone
     ATM12G13 (ESSAII project), WORKING DRAFT SEQUENCE.
    HTG; HTGS_PHASE1.

ATT16I18    AL049915    52094bp    DNA      HTG      20-MAY-1999
    Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone
     ATT16I18 (ESSAII project), WORKING DRAFT SEQUENCE.
    HTG; HTGS_PHASE1.

ATT5F17     AL049917    43277bp    DNA      HTG      20-MAY-1999
    Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone ATT5F17
     (ESSAII project), WORKING DRAFT SEQUENCE.
    HTG; HTGS_PHASE1.

==================== Updated DNA Sequences =====================

AC006341    AC006341   114498bp    DNA      PLN      25-MAY-1999
    Arabidopsis thaliana chromosome 1 BAC F3O9 sequence, complete sequence.
    HTG.

AC006837    AC006837    94234bp    DNA      HTG      27-MAY-1999
    Arabidopsis thaliana 'IGF' BAC 'F23H14' genomic sequence near marker
     'mi398', WORKING DRAFT SEQUENCE, 9 unordered pieces.
    HTG; HTGS_PHASE1.

AC007323    AC007323    85096bp    DNA      HTG      27-MAY-1999
    Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I,
     WORKING DRAFT SEQUENCE, 3 ordered pieces.
    HTG; HTGS_PHASE2.

AC007576    AC007576   112604bp    DNA      HTG      26-MAY-1999
    Arabidopsis thaliana chromosome I BAC F7A19 genomic sequence, WORKING
     DRAFT SEQUENCE, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AC007592    AC007592    93746bp    DNA      HTG      27-MAY-1999
    Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I,
     WORKING DRAFT SEQUENCE, 2 ordered pieces.
    HTG; HTGS_PHASE2.

ATAC006533  AC006533   100665bp    DNA      PLN      26-MAY-1999
    Arabidopsis thaliana chromosome II BAC F20M17 genomic sequence, complete
     sequence.
    HTG; F20M17.1; molybdopterin biosynthesis cnx2 protein; F20M17.2;
     F20M17.3; F20M17.4; F20M17.5; putative Na+/H+ exchanging protein;
     F20M17.6; putative unconventional myosin; F20M17.7; F20M17.8; putative
     receptor protein kinase; F20M17.9; putative poly(ADP-ribose)
     glycohydrolase; F20M17.10; F20M17.11; F20M17.12; F20M17.13; putative
     inositol polyphosphate-5-phosphatase; F20M17.14; F20M17.15; putative
     acetolactate synthase; F20M17.16; putative protein kinase; F20M17.17;
     putative indole-3-acetate beta-glucosyltransferase; F20M17.18; putative
     ARI,RING finger protein; F20M17.19; F20M17.20; F20M17.21; F20M17.22;
     F20M17.23.

ATAC007231  AC007231    19338bp    DNA      PLN      27-MAY-1999
    Arabidopsis thaliana chromosome II BAC F7D11 genomic sequence, complete
     sequence.
    HTG; F7D11.1; F7D11.2; putative disease resistance protein; F7D11.3;
     F7D11.4; F7D11.5; F7D11.6; putative Ta11 reverse transcriptase.

=========== Updated Sequence Features/Annotations  =============

AB027230    AB027230     1461bp    DNA      PLN      21-MAY-1999
    Arabidopsis thaliana gene for FAS2, partial cds.
    FAS2.

AF039998    AF039998      272bp    DNA      PLN      24-MAY-1999
    Arabidopsis arenosa internal transcribed spacer 1, complete sequence.
    internal transcribed spacer 1 ITS1.

AF040041    AF040041      184bp    DNA      PLN      24-MAY-1999
    Arabidopsis arenosa internal transcribed spacer 2, complete sequence.
    internal transcribed spacer 2 ITS2.

AF132475    AF132475     3270bp    DNA      PLN      26-MAY-1999
    Arabidopsis thaliana cultivar Col-0 heme oxygenase 1 (HO1) gene, nuclear
     gene encoding chloroplast protein, complete cds.
    HO1; heme oxygenase 1.

AF132476    AF132476     2117bp    DNA      PLN      26-MAY-1999
    Arabidopsis thaliana cultivar Ler heme oxygenase 1 (HO1) gene, nuclear
     gene encoding chloroplast protein, complete cds.
    HO1; heme oxygenase 1.

AF132477    AF132477     4672bp    DNA      PLN      26-MAY-1999
    Arabidopsis thaliana cultivar Col-0 heme oxygenase 2 (HO2) gene, nuclear
     gene encoding chloroplast protein, complete cds.
    HO2; heme oxygenase 2.

ATAC003105  AC003105    95167bp    DNA      PLN      22-MAY-1999
    Arabidopsis thaliana chromosome II BAC F18A8 genomic sequence, complete
     sequence.
    HTG; F18A8.1; putative beta-ketoacyl-CoA synthase; F18A8.2; potassium
     transporter, AKT1; F18A8.3; similar to barley ids-4 gene product;
     F18A8.4; heme oxygenase 1 (HO1); F18A8.5; F18A8.6; putative nitrate
     transporter; F18A8.7; putative Ser/Thr protein kinase; F18A8.8; putative
     cytochrome P450; F18A8.9; putative blue copper protein precursor;
     F18A8.10; putative receptor kinase; F18A8.11; soluble epoxide hydrolase;
     F18A8.12; putative soluble epoxide hydrolase; F18A8.13; putative cyclin;
     F18A8.14; F18A8.15.

ATAC004401  AC004401    94038bp    DNA      PLN      22-MAY-1999
    Arabidopsis thaliana chromosome II BAC F21P24 genomic sequence, complete
     sequence.
    HTG; F21P24.1; putative Ca2+-ATPase, 5' partial; F21P24.2; F21P24.3;
     putative serine carboxypeptidase I; F21P24.4; F21P24.5; F21P24.6;
     F21P24.7; F21P24.8; tRNA-Met; F21P24.9; putative protein kinase;
     F21P24.10; F21P24.11; F21P24.12; putative N-acetyltransferase;
     F21P24.13; putative casein kinase II catalytic subunit; F21P24.14;
     F21P24.15; F21P24.16; F21P24.17; putative LEA protein; F21P24.18;
     F21P24.19; putative proline-rich protein; F21P24.20; F21P24.21; putative
     metal ion transporter (Nramp).

ATAC004411  AC004411   106329bp    DNA      PLN      22-MAY-1999
    Arabidopsis thaliana chromosome II BAC F14M4 genomic sequence, complete
     sequence.
    HTG; F14M4.1; putative anion exchange protein 3; F14M4.2; putative
     alcohol dehydrogenase; F14M4.3; F14M4.4; F14M4.5; F14M4.6; ubiquitin
     extension protein (UBQ6); F14M4.7; tRNA-Ala; F14M4.8; F14M4.9; F14M4.10;
     putative squamosa-promoter binding protein; F14M4.11; putative pto
     kinase; F14M4.12; F14M4.13; putative pectinesterase; F14M4.14; F14M4.15;
     putative peptide chain release factor; F14M4.16; F14M4.17; putative
     p-glycoprotein; F14M4.18; IAA20; F14M4.19; F14M4.20; F14M4.21; putative
     cytochrome P450; F14M4.22; F14M4.23; F14M4.24; putative
     pectinacetylesterase precursor; F14M4.25; F14M4.26; F14M4.27; F14M4.28;
     F14M4.29; F14M4.30; putative AP2 domain containing protein; F14M4.31;
     putative inorganic pyrophosphatase.

ATAC004786  AC004786    86686bp    DNA      PLN      22-MAY-1999
    Arabidopsis thaliana chromosome II BAC T20K9 genomic sequence, complete
     sequence.
    HTG; T20K9.1; homeobox protein, HAT9; T20K9.2;
     1-aminocyclopropane-1-carboxylate synthase (ACS4); T20K9.3; T20K9.4;
     putative squalene epoxidase; T20K9.5; T20K9.6; putative bZIP protein;
     T20K9.7; T20K9.8; putative GTP-binding protein; T20K9.9; T20K9.10;
     T20K9.11; T20K9.12; putative amino-acid acetyltransferase; T20K9.13;
     putative serine carboxypeptidase I; T20K9.14; putative flavonol
     3-o-glucosyltransferase; T20K9.15; T20K9.16; putative Ca2+-ATPase;
     T20K9.17; T20K9.18; T20K9.19; T20K9.20.

ATAC007135  AC007135    31733bp    DNA      PLN      26-MAY-1999
    Arabidopsis thaliana chromosome II BAC F9C22 genomic sequence, complete
     sequence.
    HTG; F9C22.1; putative DNA binding protein RAV2; F9C22.2; F9C22.3;
     F9C22.4; F9C22.5; F9C22.6; F9C22.7; tRNA-Ala; F9C22.8; tRNA-Leu;
     F9C22.9; putative 40S ribosomal protein S14; F9C22.10;
     ubiquitin/ribosomal protein CEP52; F9C22.11; putative touch-induced
     calmodulin; F9C22.12; putative invertase; F9C22.13; putative kinesin
     related protein.

ATAC007197  AC007197    84908bp    DNA      PLN      22-MAY-1999
    Arabidopsis thaliana chromosome II BAC T22C12 genomic sequence, complete
     sequence.
    HTG; T22C12.1; putative disease resistance gene, 5' partial; T22C12.2;
     T22C12.3; putative cytochrome p450; T22C12.4; T22C12.5; dynamin-like
     protein ADL2; T22C12.6; T22C12.7; T22C12.8; T22C12.9; putative
     glycine-rich RNA-binding protein; T22C12.10; putative methylmalonate
     semi-aldehyde dehydrogenase; T22C12.11; T22C12.12; T22C12.13.

ATDHDPSGN   X98080     1697bp    DNA      PLN      21-MAY-1999
    A.thaliana dhdps gene.
    C-box; CAAT box; consensus transcription; dhdps gene; dihydrodipicolinate
     synthase; GT-1 box; promoter region; TATA box; dhdps;
     dihydrodipicolinate synthase.

ATH011669   AJ011669     1211bp    mRNA     PLN      25-MAY-1999
    Arabidopsis thaliana mRNA for myb cov1 protein, partial.
    myb cov1 gene; myb cov1 protein; myb cov1.

ATH6409     AJ006409      468bp    mRNA     PLN      25-MAY-1999
    Arabidopsis thaliana mRNA for flavanol sulfotransferase-like protein.
    flanavol sulfotransferase; flavonol sulfotransferase-like protein.

ATH9555     AJ009555      489bp    mRNA     PLN      25-MAY-1999
    Arabidopsis thaliana mRNA for hypothetical protein, partial.
    ORF1; hypothetical protein.

ATPHDIPSN   X83764     1381bp    mRNA     PLN      26-MAY-1999
    A.thaliana mRNA for phosphoribosyl diphosphate synthetase.
    ribose-phosphate; phosphoribosyl pyrophosphate synthetase;
     ribose-phosphate pyrophosphokinase.

ATPRSII     X92974     1188bp    mRNA     PLN      26-MAY-1999
    A.thaliana mRNA for phosphoribosyl pyrophosphate synthetase II.
    phosphoribosyl pyrophosphate synthetase; prs2 gene; PRS II;
     phosphoribosyl pyrophosphate synthetase II.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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