New Arabidopsis DNA 29-May-1999
AtDB Project
arabidopsis-seq at genome.stanford.edu
Sat May 29 14:18:17 EST 1999
====================== New DNA Sequences =======================
AB027228 AB027228 1281bp mRNA PLN 26-MAY-1999
Arabidopsis thaliana mRNA for FAS1, partial cds.
FAS1.
AB027229 AB027229 2445bp DNA PLN 26-MAY-1999
Arabidopsis thaliana gene for FAS1, partial cds.
FAS1.
AB027458 AB027458 2167bp mRNA PLN 28-MAY-1999
Arabidopsis thaliana ACE (ADHESION OF CALYX EDGES) mRNA, complete cds.
ACE.
AB027504 AB027504 864bp mRNA PLN 28-MAY-1999
Arabidopsis thaliana FT (FLOWERING LOCUS T) mRNA, complete cds.
FT.
AB027505 AB027505 780bp mRNA PLN 28-MAY-1999
Arabidopsis thaliana FT (FLOWERING LOCUS T) mRNA, complete cds, spliced
variant.
FT.
AB027506 AB027506 799bp mRNA PLN 28-MAY-1999
Arabidopsis thaliana TSF (TWIN SISTER OF FT) mRNA, complete cds.
TSF.
AB027507 AB027507 2928bp DNA PLN 28-MAY-1999
Arabidopsis thaliana ACE (ADHESION OF CALYX EDGES) gene, complete cds.
ACE.
AC007651 AC007651 114955bp DNA HTG 26-MAY-1999
Arabidopsis thaliana chromosome I BAC F20D23 genomic sequence, WORKING
DRAFT SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC007654 AC007654 87605bp DNA HTG 27-MAY-1999
Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I,
WORKING DRAFT SEQUENCE, 1 ordered pieces.
HTG; HTGS_PHASE2.
AC007658 AC007658 19304bp DNA PLN 27-MAY-1999
Arabidopsis thaliana chromosome II BAC F27I1 genomic sequence, complete
sequence.
HTG; F27I1.1; putative ABC1 protein; F27I1.2; putative chlorophyll a/b
binding protein; F27I1.3; thioredoxin-like protein; F27I1.5; putative
serine/threonine protein kinase, 5' partial.
AC007659 AC007659 89603bp DNA PLN 27-MAY-1999
Arabidopsis thaliana chromosome II BAC T14P1 genomic sequence, complete
sequence.
HTG; T14P1.1; T14P1.2; putative symbiosis-related protein; T14P1.3;
T14P1.4; putative phosphatidate cytidylyltransferase; T14P1.5; T14P1.6;
T14P1.7; T14P1.8; T14P1.9; putative transcription factor; T14P1.10;
T14P1.11; preg-like protein; T14P1.12; putative transport protein SEC61
beta-subunit; T14P1.13; T14P1.14; putative GATA-binding transcription
factor; T14P1.15; putative metalloproteinase; T14P1.16; putative
mitochondrial elongation factor G; T14P1.18; tRNA-Ala; T14P1.17;
T14P1.19; T14P1.20; T14P1.21; T14P1.22; T14P1.23; T14P1.24; T14P1.25;
T14P1.26; putative Tiny protein.
AC007660 AC007660 75198bp DNA PLN 27-MAY-1999
Arabidopsis thaliana chromosome II BAC T7D17 genomic sequence, complete
sequence.
HTG; T7D17.1; T7D17.2; T7D17.3; thioredoxin-like protein; T7D17.4;
putative 1-phosphatidylinositol-4,5-biphosphate phosphodiesterase;
T7D17.5; putative serine/threonine protein kinase; T7D17.6; T7D17.7;
T7D17.8; T7D17.9; T7D17.10; T7D17.11; T7D17.12; putative RNA helicase;
T7D17.13; T7D17.14; putative reverse transcriptase; T7D17.15; putative
response regulator protein; T7D17.16; T7D17.17; T7D17.18; T7D17.19.
AC007661 AC007661 128150bp DNA PLN 27-MAY-1999
Arabidopsis thaliana chromosome II BAC T8P21 genomic sequence, complete
sequence.
HTG; T8P21.1; putative diphenol oxidase; T8P21.2; T8P21.3; T8P21.4;
steroid reducatase; T8P21.5; putative alpha-carboxyltransferase;
T8P21.6; tRNA-Gly; T8P21.7; T8P21.8; T8P21.9; T8P21.10; T8P21.11;
putative growth regulator protein; T8P21.12; T8P21.13; T8P21.14;
T8P21.15; T8P21.16; T8P21.17; T8P21.18; T8P21.19; putative peptide
transporter protein; T8P21.20; putative mitochondrial carrier family
protein; T8P21.21; T8P21.22; T8P21.23; T8P21.24; T8P21.25; putative
serine/threonine protein kinase; T8P21.26; T8P21.27; T8P21.28; T8P21.29;
putative peptidase; T8P21.30; putative alcohol dehydrogenase; T8P21.31;
T8P21.32; T8P21.33; T8P21.34; T8P21.35; T8P21.36; putative zinc finger
protein; T8P21.37.
AC007662 AC007662 102249bp DNA PLN 27-MAY-1999
Arabidopsis thaliana chromosome II BAC F9A16 genomic sequence, complete
sequence.
HTG; F9A16.16; putative replication protein A1; F9A16.1; putative
helicase; F9A16.2; F9A16.3; F9A16.4; F9A16.5; F9A16.6; F9A16.7; putative
plasma membrane ATPase; F9A16.8; putative pol protein with Zn finger
CCHC type domain; F9A16.9; F9A16.10; F9A16.11; F9A16.12; F9A16.13;
putative MuDR transposase; F9A16.14; putative Athila retrotransposon
ORF1 protein; F9A16.15.
AF088917 AF088917 3081bp mRNA PLN 25-MAY-1999
Arabidopsis thaliana cellulose synthase catalytic subunit (IRX3) mRNA,
complete cds.
IRX3; cellulose synthase catalytic subunit.
AF139188 AF139188 1013bp mRNA PLN 27-MAY-1999
Arabidopsis thaliana HCF106 mRNA, complete cds; nuclear gene for
chloroplast product.
HCF106.
AF141659 AF141659 722bp mRNA PLN 24-MAY-1999
Arabidopsis thaliana AtHVA22a mRNA, complete cds.
AtHVA22a.
AF141660 AF141660 693bp mRNA PLN 24-MAY-1999
Arabidopsis thaliana AtHVA22b mRNA, complete cds.
AtHVA22b.
AF141661 AF141661 788bp mRNA PLN 24-MAY-1999
Arabidopsis thaliana AtHVA22c mRNA, complete cds.
AtHVA22c.
AF141662 AF141662 788bp mRNA PLN 24-MAY-1999
Arabidopsis thaliana AtHVA22d mRNA, complete cds.
AtHVA22d.
AF141853 AF141853 3467bp DNA PLN 23-MAY-1999
Arabidopsis thaliana mevalonate kinase gene, complete cds.
mevalonate kinase.
AF141977 AF141977 2384bp DNA PLN 24-MAY-1999
Arabidopsis thaliana AtHVA22a gene, complete cds.
AtHVA22a.
AF141978 AF141978 2199bp DNA PLN 24-MAY-1999
Arabidopsis thaliana AtHVA22c gene, complete cds.
AtHVA22c.
AF141979 AF141979 2580bp DNA PLN 24-MAY-1999
Arabidopsis thaliana AtHVA22d gene, complete cds.
AtHVA22d.
AF141980 AF141980 2580bp DNA PLN 24-MAY-1999
Arabidopsis thaliana AtHVA22b gene, complete cds.
AtHVA22b.
ATF22O6 AL050300 93443bp DNA PLN 21-MAY-1999
Arabidopsis thaliana DNA chromosome 3, BAC clone F22O6.
F22O6.10; putative protein (fragment); F22O6.20; beta-fructofuranosidase;
F22O6.30; ubiquitin / ribosomal protein CEP52; F22O6.40; putative
ribosomal protein S14; F22O6.50; putative protein; F22O6.60; F22O6.70;
hypothetical protein; F22O6.80; F22O6.90; F22O6.100; F22O6.110;
F22O6.120; F22O6.130; F22O6.140; F22O6.150; F22O6.160; F22O6.170;
F22O6.180; F22O6.190; F22O6.200; outer envelope membrane protein like
protein; F22O6.210; F22O6.220; F22O6.230; F22O6.240; RNA-binding protein
cp33 precursor; F22O6.250.
ATF6E21 AL049914 38340bp DNA HTG 20-MAY-1999
Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone ATF6E21
(ESSAII project), WORKING DRAFT SEQUENCE.
HTG; HTGS_PHASE1.
ATH012278 AJ012278 1001bp mRNA PLN 24-MAY-1999
Arabidopsis thaliana mRNA for ATP-dependent Clp protease subunit (clpP).
ATP-dependent Clp protease; clpP gene; clpP; ATP-dependent Clp protease
subunit ClpP.
ATH012406 AJ012406 1302bp mRNA PLN 26-MAY-1999
Arabidopsis thaliana mRNA for phosphoribosyl diphosphate synthase isozyme
3.
isozyme 3; phosphoribosyl diphosphate synthase; PRS3 gene; prs3.
ATH012407 AJ012407 1283bp mRNA PLN 26-MAY-1999
Arabidopsis thaliana mRNA for phosphoribosyl diphosphate synthase isozyme
4.
isozyme 4; phosphoribosyl diphosphate synthase; prs4 gene; prs4.
ATH133753 AJ133753 907bp mRNA PLN 20-MAY-1999
Arabidopsis thaliana mRNA for peptide methionine sulfoxide reductase.
msr gene; peptide methionine sulfoxide reductase; msr.
ATH133754 AJ133754 2650bp DNA PLN 20-MAY-1999
Arabidopsis thaliana gene for peptide methionine sulfoxide reductase.
msr gene; peptide methionine sulfoxide reductase; msr; msn.
ATH238802 AJ238802 2471bp mRNA PLN 26-MAY-1999
Arabidopsis thaliana mRNA for putative MAP kinase (clones 179D10T7,
G8H8T7).
MAP kinase.
ATH238803 AJ238803 695bp mRNA PLN 26-MAY-1999
Arabidopsis thaliana mRNA for hypothetical protein (clone E5G3T7).
hypothetical protein.
ATH238804 AJ238804 614bp mRNA PLN 26-MAY-1999
Arabidopsis thaliana mRNA for non-specific lipid transfer protein (clone
OAO201).
non-specific lipid transfer protein.
ATH238805 AJ238805 756bp mRNA PLN 26-MAY-1999
Arabidopsis thaliana mRNA for hypothetical protein (clone 83G12T7).
hypothetical protein.
ATH242588 AJ242588 1242bp mRNA PLN 21-MAY-1999
Arabidopsis thaliana mRNA for partial 1-deoxy-d-xylulose-5-phosphate
reductoisomerase (dxr gene).
1-deoxy-d-xylulose-5-phosphate reductoisomerase; dxr gene; dxr.
ATM12G13 AL049916 90570bp DNA HTG 20-MAY-1999
Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone
ATM12G13 (ESSAII project), WORKING DRAFT SEQUENCE.
HTG; HTGS_PHASE1.
ATT16I18 AL049915 52094bp DNA HTG 20-MAY-1999
Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone
ATT16I18 (ESSAII project), WORKING DRAFT SEQUENCE.
HTG; HTGS_PHASE1.
ATT5F17 AL049917 43277bp DNA HTG 20-MAY-1999
Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone ATT5F17
(ESSAII project), WORKING DRAFT SEQUENCE.
HTG; HTGS_PHASE1.
==================== Updated DNA Sequences =====================
AC006341 AC006341 114498bp DNA PLN 25-MAY-1999
Arabidopsis thaliana chromosome 1 BAC F3O9 sequence, complete sequence.
HTG.
AC006837 AC006837 94234bp DNA HTG 27-MAY-1999
Arabidopsis thaliana 'IGF' BAC 'F23H14' genomic sequence near marker
'mi398', WORKING DRAFT SEQUENCE, 9 unordered pieces.
HTG; HTGS_PHASE1.
AC007323 AC007323 85096bp DNA HTG 27-MAY-1999
Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I,
WORKING DRAFT SEQUENCE, 3 ordered pieces.
HTG; HTGS_PHASE2.
AC007576 AC007576 112604bp DNA HTG 26-MAY-1999
Arabidopsis thaliana chromosome I BAC F7A19 genomic sequence, WORKING
DRAFT SEQUENCE, 2 unordered pieces.
HTG; HTGS_PHASE1.
AC007592 AC007592 93746bp DNA HTG 27-MAY-1999
Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I,
WORKING DRAFT SEQUENCE, 2 ordered pieces.
HTG; HTGS_PHASE2.
ATAC006533 AC006533 100665bp DNA PLN 26-MAY-1999
Arabidopsis thaliana chromosome II BAC F20M17 genomic sequence, complete
sequence.
HTG; F20M17.1; molybdopterin biosynthesis cnx2 protein; F20M17.2;
F20M17.3; F20M17.4; F20M17.5; putative Na+/H+ exchanging protein;
F20M17.6; putative unconventional myosin; F20M17.7; F20M17.8; putative
receptor protein kinase; F20M17.9; putative poly(ADP-ribose)
glycohydrolase; F20M17.10; F20M17.11; F20M17.12; F20M17.13; putative
inositol polyphosphate-5-phosphatase; F20M17.14; F20M17.15; putative
acetolactate synthase; F20M17.16; putative protein kinase; F20M17.17;
putative indole-3-acetate beta-glucosyltransferase; F20M17.18; putative
ARI,RING finger protein; F20M17.19; F20M17.20; F20M17.21; F20M17.22;
F20M17.23.
ATAC007231 AC007231 19338bp DNA PLN 27-MAY-1999
Arabidopsis thaliana chromosome II BAC F7D11 genomic sequence, complete
sequence.
HTG; F7D11.1; F7D11.2; putative disease resistance protein; F7D11.3;
F7D11.4; F7D11.5; F7D11.6; putative Ta11 reverse transcriptase.
=========== Updated Sequence Features/Annotations =============
AB027230 AB027230 1461bp DNA PLN 21-MAY-1999
Arabidopsis thaliana gene for FAS2, partial cds.
FAS2.
AF039998 AF039998 272bp DNA PLN 24-MAY-1999
Arabidopsis arenosa internal transcribed spacer 1, complete sequence.
internal transcribed spacer 1 ITS1.
AF040041 AF040041 184bp DNA PLN 24-MAY-1999
Arabidopsis arenosa internal transcribed spacer 2, complete sequence.
internal transcribed spacer 2 ITS2.
AF132475 AF132475 3270bp DNA PLN 26-MAY-1999
Arabidopsis thaliana cultivar Col-0 heme oxygenase 1 (HO1) gene, nuclear
gene encoding chloroplast protein, complete cds.
HO1; heme oxygenase 1.
AF132476 AF132476 2117bp DNA PLN 26-MAY-1999
Arabidopsis thaliana cultivar Ler heme oxygenase 1 (HO1) gene, nuclear
gene encoding chloroplast protein, complete cds.
HO1; heme oxygenase 1.
AF132477 AF132477 4672bp DNA PLN 26-MAY-1999
Arabidopsis thaliana cultivar Col-0 heme oxygenase 2 (HO2) gene, nuclear
gene encoding chloroplast protein, complete cds.
HO2; heme oxygenase 2.
ATAC003105 AC003105 95167bp DNA PLN 22-MAY-1999
Arabidopsis thaliana chromosome II BAC F18A8 genomic sequence, complete
sequence.
HTG; F18A8.1; putative beta-ketoacyl-CoA synthase; F18A8.2; potassium
transporter, AKT1; F18A8.3; similar to barley ids-4 gene product;
F18A8.4; heme oxygenase 1 (HO1); F18A8.5; F18A8.6; putative nitrate
transporter; F18A8.7; putative Ser/Thr protein kinase; F18A8.8; putative
cytochrome P450; F18A8.9; putative blue copper protein precursor;
F18A8.10; putative receptor kinase; F18A8.11; soluble epoxide hydrolase;
F18A8.12; putative soluble epoxide hydrolase; F18A8.13; putative cyclin;
F18A8.14; F18A8.15.
ATAC004401 AC004401 94038bp DNA PLN 22-MAY-1999
Arabidopsis thaliana chromosome II BAC F21P24 genomic sequence, complete
sequence.
HTG; F21P24.1; putative Ca2+-ATPase, 5' partial; F21P24.2; F21P24.3;
putative serine carboxypeptidase I; F21P24.4; F21P24.5; F21P24.6;
F21P24.7; F21P24.8; tRNA-Met; F21P24.9; putative protein kinase;
F21P24.10; F21P24.11; F21P24.12; putative N-acetyltransferase;
F21P24.13; putative casein kinase II catalytic subunit; F21P24.14;
F21P24.15; F21P24.16; F21P24.17; putative LEA protein; F21P24.18;
F21P24.19; putative proline-rich protein; F21P24.20; F21P24.21; putative
metal ion transporter (Nramp).
ATAC004411 AC004411 106329bp DNA PLN 22-MAY-1999
Arabidopsis thaliana chromosome II BAC F14M4 genomic sequence, complete
sequence.
HTG; F14M4.1; putative anion exchange protein 3; F14M4.2; putative
alcohol dehydrogenase; F14M4.3; F14M4.4; F14M4.5; F14M4.6; ubiquitin
extension protein (UBQ6); F14M4.7; tRNA-Ala; F14M4.8; F14M4.9; F14M4.10;
putative squamosa-promoter binding protein; F14M4.11; putative pto
kinase; F14M4.12; F14M4.13; putative pectinesterase; F14M4.14; F14M4.15;
putative peptide chain release factor; F14M4.16; F14M4.17; putative
p-glycoprotein; F14M4.18; IAA20; F14M4.19; F14M4.20; F14M4.21; putative
cytochrome P450; F14M4.22; F14M4.23; F14M4.24; putative
pectinacetylesterase precursor; F14M4.25; F14M4.26; F14M4.27; F14M4.28;
F14M4.29; F14M4.30; putative AP2 domain containing protein; F14M4.31;
putative inorganic pyrophosphatase.
ATAC004786 AC004786 86686bp DNA PLN 22-MAY-1999
Arabidopsis thaliana chromosome II BAC T20K9 genomic sequence, complete
sequence.
HTG; T20K9.1; homeobox protein, HAT9; T20K9.2;
1-aminocyclopropane-1-carboxylate synthase (ACS4); T20K9.3; T20K9.4;
putative squalene epoxidase; T20K9.5; T20K9.6; putative bZIP protein;
T20K9.7; T20K9.8; putative GTP-binding protein; T20K9.9; T20K9.10;
T20K9.11; T20K9.12; putative amino-acid acetyltransferase; T20K9.13;
putative serine carboxypeptidase I; T20K9.14; putative flavonol
3-o-glucosyltransferase; T20K9.15; T20K9.16; putative Ca2+-ATPase;
T20K9.17; T20K9.18; T20K9.19; T20K9.20.
ATAC007135 AC007135 31733bp DNA PLN 26-MAY-1999
Arabidopsis thaliana chromosome II BAC F9C22 genomic sequence, complete
sequence.
HTG; F9C22.1; putative DNA binding protein RAV2; F9C22.2; F9C22.3;
F9C22.4; F9C22.5; F9C22.6; F9C22.7; tRNA-Ala; F9C22.8; tRNA-Leu;
F9C22.9; putative 40S ribosomal protein S14; F9C22.10;
ubiquitin/ribosomal protein CEP52; F9C22.11; putative touch-induced
calmodulin; F9C22.12; putative invertase; F9C22.13; putative kinesin
related protein.
ATAC007197 AC007197 84908bp DNA PLN 22-MAY-1999
Arabidopsis thaliana chromosome II BAC T22C12 genomic sequence, complete
sequence.
HTG; T22C12.1; putative disease resistance gene, 5' partial; T22C12.2;
T22C12.3; putative cytochrome p450; T22C12.4; T22C12.5; dynamin-like
protein ADL2; T22C12.6; T22C12.7; T22C12.8; T22C12.9; putative
glycine-rich RNA-binding protein; T22C12.10; putative methylmalonate
semi-aldehyde dehydrogenase; T22C12.11; T22C12.12; T22C12.13.
ATDHDPSGN X98080 1697bp DNA PLN 21-MAY-1999
A.thaliana dhdps gene.
C-box; CAAT box; consensus transcription; dhdps gene; dihydrodipicolinate
synthase; GT-1 box; promoter region; TATA box; dhdps;
dihydrodipicolinate synthase.
ATH011669 AJ011669 1211bp mRNA PLN 25-MAY-1999
Arabidopsis thaliana mRNA for myb cov1 protein, partial.
myb cov1 gene; myb cov1 protein; myb cov1.
ATH6409 AJ006409 468bp mRNA PLN 25-MAY-1999
Arabidopsis thaliana mRNA for flavanol sulfotransferase-like protein.
flanavol sulfotransferase; flavonol sulfotransferase-like protein.
ATH9555 AJ009555 489bp mRNA PLN 25-MAY-1999
Arabidopsis thaliana mRNA for hypothetical protein, partial.
ORF1; hypothetical protein.
ATPHDIPSN X83764 1381bp mRNA PLN 26-MAY-1999
A.thaliana mRNA for phosphoribosyl diphosphate synthetase.
ribose-phosphate; phosphoribosyl pyrophosphate synthetase;
ribose-phosphate pyrophosphokinase.
ATPRSII X92974 1188bp mRNA PLN 26-MAY-1999
A.thaliana mRNA for phosphoribosyl pyrophosphate synthetase II.
phosphoribosyl pyrophosphate synthetase; prs2 gene; PRS II;
phosphoribosyl pyrophosphate synthetase II.
NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences. However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.
To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
World Wide Web servers for sequences:
BLAST & FASTA: http://genome-www.stanford.edu/Arabidopsis/
NCBI (GenBank): http://www.ncbi.nlm.nih.gov/Web/Search/
EBI (EMBL): http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
DDBJ: http://www.nig.ac.jp/
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